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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G17800
Z-value: 1.82
Transcription factors associated with AT5G17800
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G17800
|
AT5G17800 | myb domain protein 56 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB56 | arTal_v1_Chr5_+_5877113_5877113 | 0.01 | 9.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 11.12 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr4_-_12400231_12400231 Show fit | 8.50 |
AT4G23820.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 8.25 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
|
| arTal_v1_Chr4_-_176870_176870 Show fit | 8.01 |
AT4G00400.1
|
glycerol-3-phosphate acyltransferase 8 |
|
| arTal_v1_Chr1_-_4530222_4530222 Show fit | 7.59 |
AT1G13250.1
|
galacturonosyltransferase-like 3 |
|
| arTal_v1_Chr2_-_12433796_12433796 Show fit | 7.53 |
AT2G28950.1
|
expansin A6 |
|
| arTal_v1_Chr1_-_6999839_6999839 Show fit | 7.44 |
AT1G20190.1
|
expansin 11 |
|
| arTal_v1_Chr2_-_15474717_15474828 Show fit | 7.27 |
AT2G36870.2
AT2G36870.1 |
xyloglucan endotransglucosylase/hydrolase 32 |
|
| arTal_v1_Chr5_+_3889906_3889906 Show fit | 7.17 |
AT5G12050.1
|
rho GTPase-activating protein |
|
| arTal_v1_Chr5_-_8707885_8707885 Show fit | 7.17 |
AT5G25190.1
|
Integrase-type DNA-binding superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G17800
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 28.8 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.7 | 19.6 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 1.0 | 16.6 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.3 | 15.3 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.2 | 15.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 9.8 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.4 | 8.0 | GO:0046341 | CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341) |
| 0.0 | 7.9 | GO:0006412 | translation(GO:0006412) |
| 0.1 | 7.1 | GO:0042446 | hormone biosynthetic process(GO:0042446) |
| 0.2 | 6.7 | GO:0010027 | thylakoid membrane organization(GO:0010027) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 85.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 35.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 23.9 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 19.4 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.3 | 6.6 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.1 | 6.5 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.1 | 6.2 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.4 | 6.0 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.1 | 6.0 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 5.8 | GO:0030054 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 17.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.5 | 15.3 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.6 | 14.8 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.7 | 14.7 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.2 | 11.9 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.2 | 11.1 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.2 | 9.6 | GO:0019843 | rRNA binding(GO:0019843) |
| 1.0 | 8.3 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 1.0 | 8.0 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.4 | 7.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.1 | 0.6 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.4 | PID ATM PATHWAY | ATM pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 2.1 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
| 0.6 | 1.7 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.6 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.4 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
| 0.0 | 0.2 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |