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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G17300
Z-value: 1.08
Transcription factors associated with AT5G17300
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G17300
|
AT5G17300 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RVE1 | arTal_v1_Chr5_-_5692920_5692992 | 0.59 | 9.3e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 4.42 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 3.82 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 3.53 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr2_+_6213972_6213972 Show fit | 3.43 |
AT2G14560.2
AT2G14560.1 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 3.36 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_5133860_5133860 Show fit | 3.33 |
AT1G14880.1
|
PLANT CADMIUM RESISTANCE 1 |
|
| arTal_v1_Chr2_+_6213617_6213676 Show fit | 3.32 |
AT2G14560.3
AT2G14560.4 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr3_+_11033665_11033665 Show fit | 3.23 |
AT3G29035.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 3.21 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 3.14 |
AT1G54575.2
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G17300
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 29.6 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 25.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 22.5 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.3 | 16.0 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.3 | 13.2 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.3 | 12.7 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) positive regulation of response to alcohol(GO:1901421) |
| 0.1 | 12.4 | GO:0006470 | protein dephosphorylation(GO:0006470) |
| 0.2 | 11.7 | GO:0009631 | cold acclimation(GO:0009631) |
| 2.0 | 9.8 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.2 | 9.1 | GO:0000380 | alternative mRNA splicing, via spliceosome(GO:0000380) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 46.5 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 29.4 | GO:0005739 | mitochondrion(GO:0005739) |
| 0.1 | 21.8 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 20.1 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 15.0 | GO:0005773 | vacuole(GO:0005773) |
| 0.0 | 13.5 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 13.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 11.1 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.2 | 9.2 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.4 | 8.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 25.9 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 21.1 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.1 | 18.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.3 | 14.5 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.1 | 14.3 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 13.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 11.5 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.2 | 11.1 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.2 | 10.2 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.1 | 10.0 | GO:0036459 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.4 | 2.5 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.4 | 2.1 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.4 | 1.7 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.3 | 1.6 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.2 | 1.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.9 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.2 | 0.5 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.1 | 0.4 | PID TCR PATHWAY | TCR signaling in naïve CD4+ T cells |
| 0.1 | 0.4 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 4.3 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.6 | 2.4 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.5 | 2.4 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.6 | 1.7 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.3 | 1.7 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.2 | 1.7 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.1 | 1.6 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.2 | 1.5 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 0.3 | 1.4 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.4 | 1.1 | REACTOME SPRY REGULATION OF FGF SIGNALING | Genes involved in Spry regulation of FGF signaling |