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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G16820
Z-value: 0.95
Transcription factors associated with AT5G16820
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G16820
|
AT5G16820 | heat shock factor 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HSF3 | arTal_v1_Chr5_+_5530195_5530197 | -0.36 | 5.8e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 1.83 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 1.66 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 1.52 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr2_+_6542166_6542166 Show fit | 1.48 |
AT2G15090.1
|
3-ketoacyl-CoA synthase 8 |
|
| arTal_v1_Chr5_-_1293723_1293723 Show fit | 1.48 |
AT5G04530.1
|
3-ketoacyl-CoA synthase 19 |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 1.39 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr3_+_3857780_3857780 Show fit | 1.35 |
AT3G12110.1
|
actin-11 |
|
| arTal_v1_Chr4_-_6976014_6976014 Show fit | 1.34 |
AT4G11485.1
|
low-molecular-weight cysteine-rich 11 |
|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 1.31 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr1_+_12267808_12267808 Show fit | 1.31 |
AT1G33811.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G16820
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 7.3 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.0 | 6.5 | GO:0006412 | translation(GO:0006412) |
| 0.1 | 5.3 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.2 | 4.3 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.2 | 4.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.2 | 3.6 | GO:0046501 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
| 0.1 | 3.6 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.0 | 3.0 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
| 0.2 | 2.8 | GO:0042044 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.1 | 2.7 | GO:0010103 | stomatal complex morphogenesis(GO:0010103) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 35.8 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.2 | 9.6 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 8.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 7.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 7.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 5.4 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.1 | 5.2 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 5.1 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 4.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.8 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.6 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.3 | 8.5 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 8.1 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.3 | 6.9 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.2 | 6.0 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 4.9 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.1 | 4.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 4.0 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.0 | 3.8 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.3 | 3.6 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 5.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.4 | 1.5 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.8 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.1 | 0.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 0.5 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.4 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
| 0.0 | 0.2 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.0 | 0.1 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 0.1 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
| 0.0 | 0.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 7.3 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 1.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 1.1 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.2 | 0.9 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.9 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.2 | 0.6 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.1 | 0.6 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.1 | 0.6 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.6 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.5 | REACTOME TRANSPORT OF MATURE TRANSCRIPT TO CYTOPLASM | Genes involved in Transport of Mature Transcript to Cytoplasm |