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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT5G16560

Z-value: 1.10

Transcription factors associated with AT5G16560

Gene Symbol Gene ID Gene Info
AT5G16560
AT5G16560 Homeodomain-like superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
KANarTal_v1_Chr5_-_5411766_54117660.365.8e-02Click!

Activity profile of AT5G16560 motif

Sorted Z-values of AT5G16560 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_+_17507343 3.20 AT2G41940.1
ZFP8
zinc finger protein 8
Chr3_-_5271984 2.43 AT3G15570.1
AT3G15570
Phototropic-responsive NPH3 family protein
Chr2_-_183639 2.24 AT2G01420.3
AT2G01420.1
AT2G01420.2
PIN4
Auxin efflux carrier family protein
Chr4_-_13672413 2.18 AT4G27300.1
AT4G27300
S-locus lectin protein kinase family protein
Chr1_-_19472582 2.13 AT1G52290.2
AT1G52290.1
PERK15
Protein kinase superfamily protein
Chr2_-_17777717 2.00 AT2G42690.1
AT2G42690
alpha/beta-Hydrolases superfamily protein
Chr3_-_2130451 2.00 AT3G06750.1
AT3G06750
hydroxyproline-rich glycoprotein family protein
Chr5_-_24083528 1.98 AT5G59780.2
AT5G59780.1
AT5G59780.3
MYB59
myb domain protein 59
Chr4_-_18125559 1.93 AT4G38840.1
AT4G38840
SAUR-like auxin-responsive protein family
Chr2_-_9085909 1.93 AT2G21210.1
AT2G21210.2
AT2G21210
SAUR-like auxin-responsive protein family
Chr3_-_6901334 1.65 AT3G19850.1
AT3G19850
Phototropic-responsive NPH3 family protein
Chr1_-_12053935 1.56 AT1G33240.2
GTL1
GT-2-like 1
Chr1_-_12054753 1.56 AT1G33240.1
AT1G33240.3
GTL1
GT-2-like 1
Chr2_-_7748502 1.48 AT2G17820.1
HK1
histidine kinase 1
Chr5_-_21453980 1.29 AT5G52900.1
MAKR6
membrane-associated kinase regulator
Chr1_-_7569905 1.29 AT1G21590.2
AT1G21590.1
AT1G21590
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
Chr1_-_8983314 1.29 AT1G25560.1
TEM1
AP2/B3 transcription factor family protein
Chr2_-_856725 1.16 AT2G02950.1
PKS1
phytochrome kinase substrate 1
Chr3_+_8603212 1.13 AT3G23820.1
GAE6
UDP-D-glucuronate 4-epimerase 6
Chr4_-_16384468 1.11 AT4G34220.1
AT4G34220
Leucine-rich repeat protein kinase family protein
Chr4_-_10132180 1.10 AT4G18340.2
AT4G18340.1
AT4G18340
Glycosyl hydrolase superfamily protein
Chr4_+_9560078 1.07 AT4G16990.16
AT4G16990.17
AT4G16990.1
AT4G16990.3
AT4G16990.4
RLM3
disease resistance protein (TIR-NBS class)
Chr4_+_9558571 1.06 AT4G16990.5
AT4G16990.8
AT4G16990.7
AT4G16990.6
AT4G16990.2
AT4G16990.9
RLM3
disease resistance protein (TIR-NBS class)
Chr4_-_11743318 1.05 AT4G22190.1
AT4G22190
serine/arginine repetitive matrix-like protein
Chr2_-_7103928 1.01 AT2G16400.1
BLH7
BEL1-like homeodomain 7
Chr4_+_9559738 0.98 AT4G16990.11
AT4G16990.13
AT4G16990.12
RLM3
disease resistance protein (TIR-NBS class)
Chr4_+_9559908 0.92 AT4G16990.15
AT4G16990.14
RLM3
disease resistance protein (TIR-NBS class)
Chr3_-_22742772 0.89 AT3G61460.1
BRH1
brassinosteroid-responsive RING-H2
Chr4_+_9560633 0.87 AT4G16990.19
AT4G16990.18
RLM3
disease resistance protein (TIR-NBS class)
Chr1_+_28932868 0.83 AT1G76990.3
AT1G76990.2
ACR3
ACT domain repeat 3
Chr1_+_28932119 0.83 AT1G76990.1
AT1G76990.4
ACR3
ACT domain repeat 3
Chr1_+_28932359 0.81 AT1G76990.5
ACR3
ACT domain repeat 3
Chr5_-_24765511 0.79 AT5G61590.1
AT5G61590
Integrase-type DNA-binding superfamily protein
Chr2_-_16824461 0.75 AT2G40270.2
AT2G40270
Protein kinase family protein
Chr3_+_1430363 0.74 AT3G05120.1
GID1A
alpha/beta-Hydrolases superfamily protein
Chr1_-_19225690 0.73 AT1G51805.2
AT1G51805.1
AT1G51805
Leucine-rich repeat protein kinase family protein
Chr5_-_25398282 0.73 AT5G63410.1
AT5G63410
Leucine-rich repeat protein kinase family protein
Chr2_-_16825160 0.73 AT2G40270.1
AT2G40270
Protein kinase family protein
Chr4_-_17666736 0.73 AT4G37590.1
NPY5
Phototropic-responsive NPH3 family protein
Chr4_+_9558962 0.69 AT4G16990.10
RLM3
disease resistance protein (TIR-NBS class)
Chr2_+_11545656 0.69 AT2G27050.1
EIL1
ETHYLENE-INSENSITIVE3-like 1
Chr3_-_4216302 0.69 AT3G13110.1
SERAT2%3B2
serine acetyltransferase 2;2
Chr4_-_12725835 0.64 AT4G24660.1
HB22
homeobox protein 22
Chr4_-_12725637 0.55 AT4G24660.2
HB22
homeobox protein 22
Chr2_-_13222642 0.54 AT2G31070.1
TCP10
TCP domain protein 10
Chr2_-_13190339 0.49 AT2G30990.1
AT2G30990.2
AT2G30990.5
AT2G30990.4
AT2G30990.3
AT2G30990
arginine N-methyltransferase, putative (DUF688)
Chr5_-_3065889 0.48 AT5G09850.2
AT5G09850.1
AT5G09850.3
AT5G09850.4
AT5G09850.5
AT5G09850
Transcription elongation factor (TFIIS) family protein
Chr1_-_59215 0.46 AT1G01120.1
KCS1
3-ketoacyl-CoA synthase 1
Chr4_-_15947026 0.38 AT4G33050.4
AT4G33050.3
AT4G33050.6
AT4G33050.2
AT4G33050.1
AT4G33050.5
EDA39
calmodulin-binding family protein
Chr5_-_16195751 0.33 AT5G40450.2
AT5G40450.1
AT5G40450
A-kinase anchor-like protein
Chr2_+_16049918 0.29 AT2G38310.1
PYL4
PYR1-like 4
Chr5_-_19291103 0.26 AT5G47560.1
TDT
tonoplast dicarboxylate transporter
Chr2_-_13005600 0.25 AT2G30520.2
AT2G30520.3
AT2G30520.1
RPT2
Phototropic-responsive NPH3 family protein
Chr4_+_9556783 0.23 AT4G16980.1
AT4G16980
arabinogalactan-protein family
Chr1_-_24936512 0.23 AT1G66840.1
AT1G66840.2
PMI2
PLASTID MOVEMENT IMPAIRED protein (DUF827)
Chr5_-_26915490 0.23 AT5G67440.3
NPY3
Phototropic-responsive NPH3 family protein
Chr1_-_67625 0.22 AT1G01140.2
AT1G01140.3
AT1G01140.1
CIPK9
CBL-interacting protein kinase 9
Chr5_-_26916294 0.21 AT5G67440.2
NPY3
Phototropic-responsive NPH3 family protein
Chr5_-_26916453 0.21 AT5G67440.1
NPY3
Phototropic-responsive NPH3 family protein
Chr1_+_27054030 0.14 AT1G71880.1
SUC1
sucrose-proton symporter 1
Chr3_-_20606650 0.10 AT3G55560.1
AGF2
AT-hook protein of GA feedback 2
Chr3_+_18249663 0.05 AT3G49220.2
AT3G49220.3
AT3G49220.1
AT3G49220
Plant invertase/pectin methylesterase inhibitor superfamily
Chr4_-_13069762 0.02 AT4G25620.1
AT4G25620
hydroxyproline-rich glycoprotein family protein
Chr5_+_745421 0.01 AT5G03150.1
JKD
C2H2-like zinc finger protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G16560

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.0 GO:0035865 cellular response to potassium ion(GO:0035865)
0.4 5.6 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.4 2.0 GO:0071493 cellular response to UV-B(GO:0071493)
0.3 3.1 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876) regulation of stomatal complex patterning(GO:2000037)
0.3 1.1 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.1 2.2 GO:0010315 auxin efflux(GO:0010315)
0.1 1.5 GO:0010375 stomatal complex patterning(GO:0010375)
0.1 0.7 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.1 2.5 GO:0009958 positive gravitropism(GO:0009958)
0.1 3.2 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.1 0.5 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.1 0.9 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.0 2.2 GO:0048544 recognition of pollen(GO:0048544)
0.0 0.5 GO:0030497 fatty acid elongation(GO:0030497)
0.0 0.2 GO:0043266 regulation of potassium ion transport(GO:0043266)
0.0 2.0 GO:0009873 ethylene-activated signaling pathway(GO:0009873)
0.0 0.3 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.3 GO:0015743 malate transport(GO:0015743)
0.0 0.2 GO:0009638 phototropism(GO:0009638)
0.0 0.1 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.0 0.4 GO:0000741 karyogamy(GO:0000741) polar nucleus fusion(GO:0010197)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.1 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 3.1 GO:0031225 anchored component of membrane(GO:0031225)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0010331 gibberellin binding(GO:0010331)
0.2 1.5 GO:0005034 osmosensor activity(GO:0005034)
0.2 1.1 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.2 2.0 GO:0008970 phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.1 5.6 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.1 2.2 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.1 2.5 GO:0016597 amino acid binding(GO:0016597)
0.1 0.5 GO:0009922 fatty acid elongase activity(GO:0009922)
0.0 2.2 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.3 GO:0015140 malate transmembrane transporter activity(GO:0015140)
0.0 0.3 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.1 GO:0008506 sucrose:proton symporter activity(GO:0008506)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.5 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.5 REACTOME GLUCOSE TRANSPORT Genes involved in Glucose transport