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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G15830
Z-value: 1.18
Transcription factors associated with AT5G15830
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G15830
|
AT5G15830 | basic leucine-zipper 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP3 | arTal_v1_Chr5_+_5168194_5168194 | 0.69 | 4.6e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 4.89 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 4.61 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr2_+_6213972_6213972 Show fit | 4.29 |
AT2G14560.2
AT2G14560.1 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr2_-_18077517_18077517 Show fit | 4.20 |
AT2G43570.1
|
chitinase |
|
| arTal_v1_Chr2_+_6213617_6213676 Show fit | 4.16 |
AT2G14560.3
AT2G14560.4 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr2_+_10906460_10906460 Show fit | 3.94 |
AT2G25625.2
|
histone deacetylase-like protein |
|
| arTal_v1_Chr1_-_5133860_5133860 Show fit | 3.90 |
AT1G14880.1
|
PLANT CADMIUM RESISTANCE 1 |
|
| arTal_v1_Chr2_+_10906215_10906215 Show fit | 3.75 |
AT2G25625.1
|
histone deacetylase-like protein |
|
| arTal_v1_Chr1_+_21207537_21207537 Show fit | 3.71 |
AT1G56600.1
|
galactinol synthase 2 |
|
| arTal_v1_Chr5_-_5033540_5033540 Show fit | 3.71 |
AT5G15500.2
AT5G15500.1 |
Ankyrin repeat family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G15830
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 32.0 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.1 | 29.5 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 14.7 | GO:0006970 | response to osmotic stress(GO:0006970) |
| 0.1 | 14.2 | GO:0001666 | response to hypoxia(GO:0001666) |
| 0.2 | 11.9 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.4 | 11.5 | GO:2000031 | regulation of salicylic acid mediated signaling pathway(GO:2000031) |
| 1.7 | 10.5 | GO:0051176 | positive regulation of sulfur metabolic process(GO:0051176) |
| 0.5 | 8.3 | GO:0019374 | galactolipid metabolic process(GO:0019374) |
| 0.3 | 8.2 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.2 | 8.2 | GO:0006623 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 16.5 | GO:0005773 | vacuole(GO:0005773) |
| 0.2 | 16.3 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.2 | 10.1 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.0 | 10.1 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 7.2 | GO:0005654 | nucleoplasm(GO:0005654) |
| 0.2 | 6.8 | GO:0016592 | mediator complex(GO:0016592) |
| 0.4 | 6.6 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 5.2 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.3 | 5.0 | GO:0000786 | nucleosome(GO:0000786) |
| 0.1 | 4.8 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 34.3 | GO:0000975 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 18.7 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 17.0 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 16.4 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 12.0 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.2 | 11.5 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 7.8 | GO:0004712 | protein serine/threonine/tyrosine kinase activity(GO:0004712) |
| 0.1 | 7.6 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.1 | 7.0 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.8 | 6.8 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 2.8 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.3 | 1.8 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.4 | 1.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.4 | 1.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.3 | 1.2 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.3 | 0.9 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
| 0.2 | 0.9 | PID CDC42 PATHWAY | CDC42 signaling events |
| 0.1 | 0.9 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.2 | 0.6 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.1 | 0.5 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.1 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 2.1 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.3 | 2.0 | REACTOME BASE EXCISION REPAIR | Genes involved in Base Excision Repair |
| 0.3 | 1.7 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.5 | 1.5 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |
| 0.2 | 1.5 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 1.2 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.3 | 0.9 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
| 0.3 | 0.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.2 | 0.7 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |