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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G14960
Z-value: 2.23
Transcription factors associated with AT5G14960
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G14960
|
AT5G14960 | DP-E2F-like 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DEL2 | arTal_v1_Chr5_+_4843855_4843855 | -0.84 | 1.6e-08 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 14.97 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_-_27853233_27853269 Show fit | 8.94 |
AT1G74070.2
AT1G74070.1 |
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
|
| arTal_v1_Chr5_-_20637996_20638104 Show fit | 8.49 |
AT5G50740.1
AT5G50740.2 AT5G50740.4 AT5G50740.3 AT5G50740.5 |
Heavy metal transport/detoxification superfamily protein |
|
| arTal_v1_Chr4_+_14017343_14017343 Show fit | 7.85 |
AT4G28310.1
|
microtubule-associated protein |
|
| arTal_v1_Chr4_-_10278794_10278794 Show fit | 7.53 |
AT4G18670.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr5_+_19825078_19825078 Show fit | 7.24 |
AT5G48900.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr1_-_21626402_21626402 Show fit | 7.18 |
AT1G58290.1
|
Glutamyl-tRNA reductase family protein |
|
| arTal_v1_Chr3_-_17288953_17289006 Show fit | 6.82 |
AT3G46940.1
AT3G46940.2 |
DUTP-PYROPHOSPHATASE-LIKE 1 |
|
| arTal_v1_Chr1_+_2263037_2263037 Show fit | 6.43 |
AT1G07370.1
|
proliferating cellular nuclear antigen 1 |
|
| arTal_v1_Chr2_+_1033598_1033598 Show fit | 6.38 |
AT2G03410.1
|
Mo25 family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G14960
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.6 | 18.3 | GO:1902975 | cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975) |
| 2.9 | 17.6 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
| 0.0 | 17.3 | GO:0005975 | carbohydrate metabolic process(GO:0005975) |
| 0.4 | 15.6 | GO:0007062 | sister chromatid cohesion(GO:0007062) |
| 1.0 | 14.0 | GO:0006268 | DNA unwinding involved in DNA replication(GO:0006268) |
| 0.8 | 12.1 | GO:0044774 | mitotic DNA integrity checkpoint(GO:0044774) |
| 0.1 | 11.3 | GO:0010114 | response to red light(GO:0010114) |
| 0.1 | 10.2 | GO:0009627 | systemic acquired resistance(GO:0009627) |
| 0.7 | 10.0 | GO:0044030 | regulation of DNA methylation(GO:0044030) |
| 1.9 | 9.3 | GO:1902299 | pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.4 | 23.6 | GO:0042555 | MCM complex(GO:0042555) |
| 0.1 | 15.0 | GO:0099503 | secretory vesicle(GO:0099503) |
| 1.4 | 12.7 | GO:0005662 | DNA replication factor A complex(GO:0005662) |
| 3.6 | 10.8 | GO:0005658 | alpha DNA polymerase:primase complex(GO:0005658) |
| 0.1 | 10.5 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 10.0 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 3.1 | 9.2 | GO:0031390 | Ctf18 RFC-like complex(GO:0031390) |
| 1.3 | 9.1 | GO:0000808 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
| 1.1 | 9.1 | GO:0070531 | BRCA1-A complex(GO:0070531) |
| 0.1 | 8.4 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 18.0 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 2.2 | 17.2 | GO:0017116 | ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) purine NTP-dependent helicase activity(GO:0070035) |
| 1.1 | 17.0 | GO:0003688 | DNA replication origin binding(GO:0003688) |
| 0.0 | 13.9 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.0 | 12.9 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 12.8 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.3 | 11.4 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 3.6 | 10.7 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
| 0.9 | 9.0 | GO:0098847 | single-stranded telomeric DNA binding(GO:0043047) sequence-specific single stranded DNA binding(GO:0098847) |
| 0.8 | 7.9 | GO:0009378 | four-way junction helicase activity(GO:0009378) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 9.9 | PID ATR PATHWAY | ATR signaling pathway |
| 1.5 | 9.1 | PID BARD1 PATHWAY | BARD1 signaling events |
| 1.0 | 4.1 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.5 | 4.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.3 | 2.9 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.1 | 21.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 1.1 | 9.1 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
| 1.8 | 7.2 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.3 | 5.1 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.8 | 4.0 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.2 | 2.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.9 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.1 | 0.5 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |