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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G13910
Z-value: 1.14
Transcription factors associated with AT5G13910
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G13910
|
AT5G13910 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LEP | arTal_v1_Chr5_-_4483247_4483247 | -0.09 | 6.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_5645443_5645443 Show fit | 5.32 |
AT1G16510.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr1_+_6100964_6101015 Show fit | 5.29 |
AT1G17745.1
AT1G17745.2 |
D-3-phosphoglycerate dehydrogenase |
|
| arTal_v1_Chr1_+_8164959_8164959 Show fit | 5.05 |
AT1G23040.3
AT1G23040.2 |
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr4_+_17440177_17440177 Show fit | 4.96 |
AT4G36990.1
|
heat shock factor 4 |
|
| arTal_v1_Chr5_+_26772644_26772644 Show fit | 4.86 |
AT5G67080.1
|
mitogen-activated protein kinase kinase kinase 19 |
|
| arTal_v1_Chr1_+_8164782_8164782 Show fit | 4.73 |
AT1G23040.1
|
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr4_+_7239200_7239200 Show fit | 4.65 |
AT4G12080.1
|
AT-hook motif nuclear-localized protein 1 |
|
| arTal_v1_Chr1_-_17266724_17266824 Show fit | 4.52 |
AT1G46768.3
AT1G46768.2 AT1G46768.1 |
related to AP2 1 |
|
| arTal_v1_Chr1_-_24362054_24362054 Show fit | 4.21 |
AT1G65520.1
|
delta(3), delta(2)-enoyl CoA isomerase 1 |
|
| arTal_v1_Chr4_+_12977192_12977341 Show fit | 4.16 |
AT4G25390.1
AT4G25390.2 |
Protein kinase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G13910
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.0 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 0.7 | 6.7 | GO:0031204 | posttranslational protein targeting to membrane, translocation(GO:0031204) |
| 0.1 | 6.3 | GO:0010200 | response to chitin(GO:0010200) |
| 1.0 | 6.2 | GO:1900367 | positive regulation of defense response to insect(GO:1900367) |
| 0.0 | 5.4 | GO:0050832 | defense response to fungus(GO:0050832) |
| 1.1 | 5.3 | GO:0006564 | L-serine biosynthetic process(GO:0006564) |
| 0.1 | 5.0 | GO:0034605 | cellular response to heat(GO:0034605) |
| 0.0 | 5.0 | GO:0009408 | response to heat(GO:0009408) |
| 0.0 | 4.6 | GO:0009414 | response to water deprivation(GO:0009414) |
| 0.1 | 4.2 | GO:0006635 | fatty acid beta-oxidation(GO:0006635) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.3 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 7.8 | GO:0044216 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 1.1 | 6.7 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.0 | 4.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.0 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 3.7 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 3.1 | GO:0016591 | DNA-directed RNA polymerase II, holoenzyme(GO:0016591) |
| 1.0 | 3.0 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.0 | 2.9 | GO:0005759 | mitochondrial matrix(GO:0005759) |
| 0.3 | 2.6 | GO:0000813 | ESCRT I complex(GO:0000813) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.0 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 8.9 | GO:0019900 | kinase binding(GO:0019900) |
| 0.3 | 8.0 | GO:0097602 | cullin family protein binding(GO:0097602) |
| 0.7 | 6.7 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
| 1.2 | 5.8 | GO:0004165 | dodecenoyl-CoA delta-isomerase activity(GO:0004165) |
| 0.1 | 5.7 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 5.7 | GO:0000975 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 1.3 | 5.3 | GO:0004617 | phosphoglycerate dehydrogenase activity(GO:0004617) |
| 0.9 | 4.7 | GO:0003680 | AT DNA binding(GO:0003680) |
| 0.3 | 4.0 | GO:0015112 | nitrate transmembrane transporter activity(GO:0015112) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.0 | PID P73PATHWAY | p73 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 4.2 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |