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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G13790
Z-value: 5.40
Transcription factors associated with AT5G13790
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G13790
|
AT5G13790 | AGAMOUS-like 15 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AGL15 | arTal_v1_Chr5_-_4450864_4450958 | -0.45 | 1.7e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 20.24 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 20.10 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 18.86 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr4_+_7156150_7156150 Show fit | 18.41 |
AT4G11910.1
|
STAY-GREEN-like protein |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 18.37 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 17.87 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_+_19375985_19375985 Show fit | 17.39 |
AT2G47190.1
|
myb domain protein 2 |
|
| arTal_v1_Chr1_-_20385380_20385380 Show fit | 17.02 |
AT1G54570.1
|
Esterase/lipase/thioesterase family protein |
|
| arTal_v1_Chr5_-_2176446_2176446 Show fit | 16.58 |
AT5G07010.1
|
sulfotransferase 2A |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 16.36 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G13790
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 149.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 5.7 | 90.9 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.6 | 63.8 | GO:0007568 | aging(GO:0007568) |
| 0.2 | 58.4 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
| 1.4 | 57.4 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.9 | 46.3 | GO:0009694 | jasmonic acid metabolic process(GO:0009694) |
| 1.5 | 45.6 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 2.6 | 41.5 | GO:0015996 | chlorophyll catabolic process(GO:0015996) |
| 2.7 | 37.8 | GO:0001676 | long-chain fatty acid metabolic process(GO:0001676) |
| 0.6 | 37.0 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 923.2 | GO:0005634 | nucleus(GO:0005634) |
| 0.4 | 129.7 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.2 | 69.4 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 3.1 | 58.8 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.9 | 38.8 | GO:0009504 | cell plate(GO:0009504) |
| 0.3 | 37.8 | GO:0033647 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.3 | 36.8 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.7 | 34.8 | GO:0005770 | late endosome(GO:0005770) |
| 0.4 | 34.0 | GO:0016604 | nuclear body(GO:0016604) |
| 0.3 | 29.4 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 204.9 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.4 | 124.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.8 | 106.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 79.9 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 1.6 | 60.5 | GO:0080030 | methyl indole-3-acetate esterase activity(GO:0080030) |
| 0.6 | 42.5 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.3 | 41.0 | GO:0003779 | actin binding(GO:0003779) |
| 0.3 | 38.1 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.6 | 34.2 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.3 | 33.5 | GO:0003682 | chromatin binding(GO:0003682) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.4 | 12.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.8 | 7.8 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 1.5 | 7.7 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 1.5 | 7.7 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.5 | 4.8 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.7 | 4.0 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.3 | 3.4 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.9 | 2.6 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.4 | 2.2 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.5 | 1.4 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.0 | 33.3 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 3.1 | 12.2 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 2.0 | 12.0 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 1.1 | 6.3 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 1.6 | 4.8 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 1.1 | 4.4 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.9 | 3.6 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.8 | 3.4 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.3 | 3.2 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.3 | 2.9 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |