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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G13180
Z-value: 1.76
Transcription factors associated with AT5G13180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G13180
|
AT5G13180 | NAC domain containing protein 83 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC083 | arTal_v1_Chr5_+_4196256_4196256 | 0.81 | 1.6e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 13.90 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 10.81 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 9.86 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 9.85 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 9.22 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 8.76 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 8.75 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 8.67 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 8.55 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 8.17 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G13180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 62.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.7 | 25.6 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.6 | 24.8 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 24.5 | GO:0030163 | protein catabolic process(GO:0030163) |
| 0.5 | 24.3 | GO:0072666 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.3 | 22.4 | GO:0010150 | leaf senescence(GO:0010150) |
| 2.4 | 21.7 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
| 0.2 | 21.6 | GO:0010200 | response to chitin(GO:0010200) |
| 4.1 | 20.5 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 1.1 | 20.4 | GO:0046149 | chlorophyll catabolic process(GO:0015996) pigment catabolic process(GO:0046149) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 52.6 | GO:0005886 | plasma membrane(GO:0005886) |
| 1.0 | 40.2 | GO:0005764 | lysosome(GO:0005764) |
| 0.2 | 32.7 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.2 | 22.6 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.2 | 21.9 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 21.4 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.3 | 17.6 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.7 | 16.9 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.2 | 14.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 2.3 | 14.0 | GO:0005776 | autophagosome(GO:0005776) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 58.2 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 48.8 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.3 | 41.2 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.3 | 31.6 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 30.9 | GO:0020037 | heme binding(GO:0020037) |
| 0.2 | 27.1 | GO:0019900 | kinase binding(GO:0019900) |
| 0.2 | 25.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 23.4 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 22.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.4 | 21.9 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 6.3 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.5 | 3.8 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 1.1 | 3.4 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.7 | 3.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.4 | 2.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.8 | 2.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.4 | 1.8 | PID CDC42 PATHWAY | CDC42 signaling events |
| 0.4 | 1.5 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.2 | 1.3 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.3 | 1.0 | PID RAS PATHWAY | Regulation of Ras family activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 7.4 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 4.3 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.4 | 3.9 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.5 | 3.7 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.8 | 3.4 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.8 | 3.0 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.6 | 3.0 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.9 | 2.8 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.4 | 2.6 | REACTOME APOPTOSIS | Genes involved in Apoptosis |
| 0.3 | 2.4 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |