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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G13080
Z-value: 3.79
Transcription factors associated with AT5G13080
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G13080
|
AT5G13080 | WRKY DNA-binding protein 75 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY75 | arTal_v1_Chr5_-_4151201_4151201 | 0.95 | 4.0e-15 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 21.04 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 18.45 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 16.98 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 16.57 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_+_18066960_18066960 Show fit | 16.33 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 16.25 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 16.14 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 16.10 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 15.64 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 15.51 |
AT2G14610.1
|
pathogenesis-related protein 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G13080
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 177.8 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.7 | 118.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.8 | 95.1 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.8 | 84.8 | GO:0010200 | response to chitin(GO:0010200) |
| 1.7 | 83.8 | GO:0072666 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 1.8 | 79.3 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 5.5 | 71.5 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.4 | 69.8 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 1.5 | 67.6 | GO:0002239 | response to oomycetes(GO:0002239) |
| 1.7 | 66.2 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 420.3 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 406.6 | GO:0005634 | nucleus(GO:0005634) |
| 0.3 | 133.4 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 91.9 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.4 | 57.7 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.7 | 45.4 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.5 | 40.9 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.6 | 38.9 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.2 | 38.6 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 1.9 | 37.0 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 241.6 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 160.6 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.7 | 127.4 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.8 | 115.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.8 | 105.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 1.3 | 73.3 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 1.0 | 71.8 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.6 | 67.4 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 1.3 | 65.0 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.8 | 56.1 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.2 | 15.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 1.2 | 13.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 3.5 | 10.5 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 2.0 | 10.2 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 1.4 | 9.9 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
| 3.2 | 9.7 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 1.1 | 7.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 1.1 | 6.4 | PID PLK1 PATHWAY | PLK1 signaling events |
| 1.6 | 3.2 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
| 0.8 | 3.2 | PID IL4 2PATHWAY | IL4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.4 | 33.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 2.6 | 20.6 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 3.3 | 19.9 | REACTOME BILE ACID AND BILE SALT METABOLISM | Genes involved in Bile acid and bile salt metabolism |
| 1.5 | 13.1 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.4 | 13.0 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 1.8 | 12.4 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 1.8 | 11.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 2.4 | 9.8 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 1.5 | 7.6 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 2.5 | 7.4 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |