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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT5G12870

Z-value: 0.30

Transcription factors associated with AT5G12870

Gene Symbol Gene ID Gene Info
AT5G12870
AT5G12870 myb domain protein 46

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
MYB46arTal_v1_Chr5_-_4065075_4065075-0.311.1e-01Click!

Activity profile of AT5G12870 motif

Sorted Z-values of AT5G12870 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_21582614 0.91 AT5G53200.1
TRY
Homeodomain-like superfamily protein
Chr4_-_10316886 0.65 AT4G18780.1
IRX1
cellulose synthase family protein
Chr1_-_24171502 0.56 AT1G65060.2
AT1G65060.1
4CL3
4-coumarate:CoA ligase 3
Chr5_+_17714390 0.48 AT5G44030.2
AT5G44030.1
CESA4
cellulose synthase A4
Chr4_+_18053360 0.46 AT4G38620.1
MYB4
myb domain protein 4
Chr2_-_15560755 0.45 AT2G37040.1
PAL1
PHE ammonia lyase 1
Chr5_-_5741500 0.44 AT5G17420.1
IRX3
Cellulose synthase family protein
Chr4_-_16533001 0.41 AT4G34610.2
AT4G34610.4
BLH6
BEL1-like homeodomain 6
Chr4_-_16533362 0.40 AT4G34610.1
AT4G34610.3
BLH6
BEL1-like homeodomain 6
Chr3_+_6744377 0.37 AT3G19450.1
ATCAD4
GroES-like zinc-binding alcohol dehydrogenase family protein
Chr5_+_5438165 0.34 AT5G16600.1
MYB43
myb domain protein 43
Chr1_-_24929054 0.33 AT1G66810.3
AT1G66810.2
AT1G66810
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr5_+_17715687 0.29 AT5G44030.3
CESA4
cellulose synthase A4
Chr1_-_24928803 0.28 AT1G66810.1
AT1G66810
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr1_-_5630476 0.27 AT1G16490.2
MYB58
myb domain protein 58
Chr5_-_23917873 0.27 AT5G59290.3
AT5G59290.2
UXS3
UDP-glucuronic acid decarboxylase 3
Chr5_-_23918266 0.25 AT5G59290.1
AT5G59290.4
UXS3
UDP-glucuronic acid decarboxylase 3
Chr4_+_16310409 0.24 AT4G34050.3
CCoAOMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_16310768 0.23 AT4G34050.1
AT4G34050.2
CCoAOMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_15003146 0.21 AT4G30810.1
scpl29
serine carboxypeptidase-like 29
Chr1_+_23337167 0.19 AT1G62990.1
KNAT7
homeobox knotted-like protein
Chr4_+_6883513 0.15 AT4G11310.1
AT4G11310
Papain family cysteine protease
Chr1_-_5631088 0.13 AT1G16490.1
MYB58
myb domain protein 58
Chr1_+_29786495 0.10 AT1G79180.2
MYB63
myb domain protein 63
Chr1_+_6966842 0.09 AT1G20090.1
ROP2
RHO-related protein from plants 2
Chr1_+_29786257 0.08 AT1G79180.1
MYB63
myb domain protein 63
Chr3_+_19042858 0.05 AT3G51300.1
ROP1
RHO-related protein from plants 1
Chr4_+_17368915 0.05 AT4G36870.2
BLH2
BEL1-like homeodomain 2
Chr1_+_27601593 0.04 AT1G73410.1
AT1G73410.2
MYB54
myb domain protein 54
Chr4_+_5992908 0.03 AT4G09460.1
MYB6
myb domain protein 6
Chr4_+_17369179 0.01 AT4G36870.3
AT4G36870.1
AT4G36870.4
BLH2
BEL1-like homeodomain 2

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G12870

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.2 0.5 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 0.5 GO:0019336 phenol-containing compound catabolic process(GO:0019336)
0.1 0.4 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.1 0.5 GO:0033319 UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.0 0.8 GO:2000762 regulation of phenylpropanoid metabolic process(GO:2000762)
0.0 0.8 GO:2000652 regulation of secondary cell wall biogenesis(GO:2000652)
0.0 0.8 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.9 GO:0010091 trichome branching(GO:0010091)
0.0 0.6 GO:0010584 pollen exine formation(GO:0010584)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0010330 cellulose synthase complex(GO:0010330)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)
0.1 0.5 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.1 1.9 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 0.5 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.0 0.6 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.4 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)