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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G11510
Z-value: 2.84
Transcription factors associated with AT5G11510
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G11510
|
AT5G11510 | myb domain protein 3r-4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB3R-4 | arTal_v1_Chr5_+_3680325_3680452 | 0.84 | 2.2e-08 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 14.22 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 12.59 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 12.50 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
|
| arTal_v1_Chr5_+_625254_625254 Show fit | 10.84 |
AT5G02760.1
|
Protein phosphatase 2C family protein |
|
| arTal_v1_Chr1_+_10375754_10375754 Show fit | 10.58 |
AT1G29670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_+_10375599_10375599 Show fit | 10.51 |
AT1G29670.2
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_+_2199151_2199151 Show fit | 10.42 |
AT2G05790.1
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 10.36 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr4_-_17606924_17607050 Show fit | 9.99 |
AT4G37450.1
AT4G37450.2 |
arabinogalactan protein 18 |
|
| arTal_v1_Chr1_-_598657_598657 Show fit | 9.56 |
AT1G02730.1
|
cellulose synthase-like D5 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G11510
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 32.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 1.6 | 30.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.8 | 17.2 | GO:0006833 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.7 | 16.6 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.2 | 16.6 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 16.3 | GO:0000160 | phosphorelay signal transduction system(GO:0000160) |
| 0.3 | 15.8 | GO:0016145 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.2 | 14.8 | GO:0000226 | microtubule cytoskeleton organization(GO:0000226) |
| 0.4 | 13.1 | GO:0006284 | base-excision repair(GO:0006284) |
| 2.1 | 12.3 | GO:0009800 | cinnamic acid biosynthetic process(GO:0009800) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 64.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.4 | 60.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 56.6 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 42.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 28.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 1.2 | 16.1 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.5 | 12.3 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.3 | 10.7 | GO:0010319 | stromule(GO:0010319) |
| 2.0 | 10.0 | GO:0009897 | external side of plasma membrane(GO:0009897) |
| 1.1 | 8.8 | GO:0009538 | photosystem I reaction center(GO:0009538) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 26.7 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.3 | 23.5 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.7 | 21.9 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.9 | 17.2 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.5 | 17.2 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.6 | 16.6 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 1.8 | 14.2 | GO:0019137 | thioglucosidase activity(GO:0019137) |
| 0.6 | 13.8 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.7 | 13.1 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 0.1 | 12.7 | GO:0009055 | electron carrier activity(GO:0009055) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 1.1 | 3.2 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.3 | PID REELIN PATHWAY | Reelin signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.7 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.5 | 2.1 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.7 | 1.5 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.9 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |