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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G08750
Z-value: 1.55
Transcription factors associated with AT5G08750
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G08750
|
AT5G08750 | RING/FYVE/PHD zinc finger superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G08750 | arTal_v1_Chr5_+_2851814_2851910 | -0.85 | 1.5e-08 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 10.14 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 7.74 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr4_-_176870_176870 Show fit | 7.46 |
AT4G00400.1
|
glycerol-3-phosphate acyltransferase 8 |
|
| arTal_v1_Chr5_+_18634041_18634041 Show fit | 6.59 |
AT5G45950.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_3356811_3356811 Show fit | 6.56 |
AT3G10720.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr4_+_14215473_14215473 Show fit | 6.31 |
AT4G28780.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_-_4530222_4530222 Show fit | 6.09 |
AT1G13250.1
|
galacturonosyltransferase-like 3 |
|
| arTal_v1_Chr4_+_620691_620697 Show fit | 5.82 |
AT4G01460.1
AT4G01460.2 |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
|
| arTal_v1_Chr3_-_1860797_1860797 Show fit | 5.77 |
AT3G06145.1
|
RING zinc finger protein |
|
| arTal_v1_Chr1_-_4265156_4265156 Show fit | 5.42 |
AT1G12500.1
|
Nucleotide-sugar transporter family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G08750
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 19.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 10.7 | GO:0042335 | cuticle development(GO:0042335) |
| 0.6 | 10.3 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.4 | 7.5 | GO:0016024 | CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341) |
| 2.3 | 6.8 | GO:0045876 | positive regulation of sister chromatid cohesion(GO:0045876) |
| 0.1 | 6.1 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.1 | 5.9 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 5.7 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.0 | 5.7 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.3 | 5.2 | GO:0009969 | xyloglucan biosynthetic process(GO:0009969) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 21.1 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 14.9 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 10.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 9.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 7.9 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.0 | 5.5 | GO:0005874 | microtubule(GO:0005874) |
| 0.1 | 5.3 | GO:0031226 | intrinsic component of plasma membrane(GO:0031226) |
| 0.2 | 4.5 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 3.8 | GO:0016021 | integral component of membrane(GO:0016021) |
| 0.3 | 2.6 | GO:0042555 | MCM complex(GO:0042555) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 17.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.7 | 10.3 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 1.0 | 8.4 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.2 | 6.1 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 5.7 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 5.5 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.1 | 4.9 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857) |
| 0.1 | 4.7 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.1 | 3.9 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 3.8 | GO:0008289 | lipid binding(GO:0008289) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 4.9 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.3 | 1.0 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.1 | 0.4 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 4.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.3 | 1.0 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.0 | 0.4 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |