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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G08130
Z-value: 0.92
Transcription factors associated with AT5G08130
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G08130
|
AT5G08130 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BIM1 | arTal_v1_Chr5_-_2610123_2610250 | -0.58 | 1.3e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 5.49 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_-_1940463_1940496 Show fit | 4.23 |
AT1G06360.1
AT1G06360.2 |
Fatty acid desaturase family protein |
|
| arTal_v1_Chr3_-_2334185_2334185 Show fit | 3.45 |
AT3G07320.1
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr2_-_15483706_15483788 Show fit | 3.36 |
AT2G36885.2
AT2G36885.1 |
translation initiation factor |
|
| arTal_v1_Chr2_+_6399621_6399621 Show fit | 3.27 |
AT2G14890.2
|
arabinogalactan protein 9 |
|
| arTal_v1_Chr2_+_6399405_6399405 Show fit | 3.08 |
AT2G14890.1
|
arabinogalactan protein 9 |
|
| arTal_v1_Chr1_-_84864_84946 Show fit | 2.89 |
AT1G01190.1
AT1G01190.2 |
cytochrome P450, family 78, subfamily A, polypeptide 8 |
|
| arTal_v1_Chr4_-_17181261_17181261 Show fit | 2.82 |
AT4G36360.2
|
beta-galactosidase 3 |
|
| arTal_v1_Chr4_-_17181466_17181466 Show fit | 2.80 |
AT4G36360.1
|
beta-galactosidase 3 |
|
| arTal_v1_Chr4_-_9157133_9157133 Show fit | 2.60 |
AT4G16155.1
|
dihydrolipoamide dehydrogenase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G08130
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 6.3 | GO:0090308 | regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309) |
| 0.0 | 6.3 | GO:0006631 | fatty acid metabolic process(GO:0006631) |
| 0.1 | 5.7 | GO:0009627 | systemic acquired resistance(GO:0009627) |
| 0.1 | 5.0 | GO:0048825 | cotyledon development(GO:0048825) |
| 0.3 | 4.8 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 4.6 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.2 | 4.2 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.0 | 4.0 | GO:0000226 | microtubule cytoskeleton organization(GO:0000226) |
| 0.0 | 3.0 | GO:0009664 | plant-type cell wall organization(GO:0009664) |
| 1.0 | 2.9 | GO:0006110 | regulation of glycolytic process(GO:0006110) regulation of nucleotide catabolic process(GO:0030811) regulation of carbohydrate catabolic process(GO:0043470) regulation of cellular carbohydrate catabolic process(GO:0043471) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.0 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 9.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 8.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 6.9 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.5 | 6.6 | GO:0005720 | nuclear heterochromatin(GO:0005720) |
| 0.1 | 5.7 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 5.1 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.3 | 4.0 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.1 | 2.3 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.0 | 1.3 | GO:0009528 | plastid inner membrane(GO:0009528) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 6.6 | GO:0010428 | methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429) |
| 0.2 | 5.5 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.3 | 4.8 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 4.6 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.1 | 4.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.5 | 4.2 | GO:0009979 | 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979) |
| 0.0 | 4.1 | GO:0019900 | kinase binding(GO:0019900) |
| 0.9 | 3.7 | GO:0070330 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.7 | 2.7 | GO:0009784 | transmembrane receptor histidine kinase activity(GO:0009784) transmembrane histidine kinase cytokinin receptor activity(GO:0009885) |
| 0.5 | 2.6 | GO:0004148 | dihydrolipoyl dehydrogenase activity(GO:0004148) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 1.0 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.2 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 1.1 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.4 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |