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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G07310
Z-value: 1.26
Transcription factors associated with AT5G07310
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G07310
|
AT5G07310 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G07310 | arTal_v1_Chr5_+_2305551_2305551 | -0.17 | 3.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 5.43 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 4.88 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 4.85 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 4.62 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr3_-_11013451_11013451 Show fit | 4.39 |
AT3G29030.1
|
expansin A5 |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 4.24 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_+_23345754_23345754 Show fit | 3.74 |
AT3G63200.1
|
PATATIN-like protein 9 |
|
| arTal_v1_Chr2_+_2199151_2199151 Show fit | 3.64 |
AT2G05790.1
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 3.56 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr5_+_152446_152446 Show fit | 3.51 |
AT5G01370.1
|
ALC-interacting protein 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G07310
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 25.5 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.2 | 13.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 7.1 | GO:0016485 | protein processing(GO:0016485) |
| 0.4 | 6.4 | GO:0010497 | plasmodesmata-mediated intercellular transport(GO:0010497) |
| 0.4 | 5.6 | GO:1902183 | regulation of shoot apical meristem development(GO:1902183) |
| 0.1 | 5.2 | GO:0048825 | cotyledon development(GO:0048825) |
| 0.0 | 5.0 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.1 | 4.7 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.4 | 3.5 | GO:0010047 | fruit dehiscence(GO:0010047) |
| 0.1 | 3.5 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 61.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 31.1 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 19.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 11.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 8.9 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 7.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 6.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 6.8 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 4.7 | GO:0010319 | stromule(GO:0010319) |
| 0.5 | 3.9 | GO:0009538 | photosystem I reaction center(GO:0009538) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.2 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.2 | 6.6 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.1 | 6.5 | GO:0004857 | enzyme inhibitor activity(GO:0004857) |
| 0.1 | 6.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 6.3 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 6.2 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.2 | 5.9 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.2 | 4.9 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.2 | 4.9 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 4.8 | GO:0042802 | identical protein binding(GO:0042802) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.3 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.2 | 1.7 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 1.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.3 | 1.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 1.0 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.8 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 0.6 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.9 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 1.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 1.4 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.1 | 1.4 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.3 | 1.3 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 1.0 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.3 | 0.8 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.8 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.6 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.0 | 0.1 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |