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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G06960
Z-value: 0.97
Transcription factors associated with AT5G06960
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G06960
|
AT5G06960 | OCS-element binding factor 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| OBF5 | arTal_v1_Chr5_+_2154746_2154748 | 0.91 | 1.9e-11 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 5.48 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 5.41 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 5.35 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr2_+_6213972_6213972 Show fit | 5.18 |
AT2G14560.2
AT2G14560.1 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr2_+_6213617_6213676 Show fit | 5.04 |
AT2G14560.3
AT2G14560.4 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr2_+_19375985_19375985 Show fit | 4.88 |
AT2G47190.1
|
myb domain protein 2 |
|
| arTal_v1_Chr3_+_19239305_19239412 Show fit | 4.81 |
AT3G51860.1
AT3G51860.2 |
cation exchanger 3 |
|
| arTal_v1_Chr5_+_5658416_5658416 Show fit | 4.81 |
AT5G17220.1
|
glutathione S-transferase phi 12 |
|
| arTal_v1_Chr5_-_2176446_2176446 Show fit | 4.76 |
AT5G07010.1
|
sulfotransferase 2A |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 4.76 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G06960
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 20.2 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 18.0 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.1 | 13.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.5 | 11.9 | GO:2000031 | regulation of salicylic acid mediated signaling pathway(GO:2000031) |
| 0.2 | 11.0 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.0 | 10.5 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 10.0 | GO:0007568 | aging(GO:0007568) |
| 0.2 | 9.5 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 1.7 | 8.7 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 1.5 | 7.7 | GO:0019323 | pentose catabolic process(GO:0019323) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 12.6 | GO:0005615 | extracellular space(GO:0005615) |
| 0.6 | 9.2 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 4.4 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.6 | 4.3 | GO:0000153 | cytoplasmic ubiquitin ligase complex(GO:0000153) |
| 0.3 | 4.2 | GO:0031231 | integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231) |
| 0.1 | 4.1 | GO:0016592 | mediator complex(GO:0016592) |
| 0.1 | 3.7 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
| 0.5 | 3.5 | GO:0090395 | plant cell papilla(GO:0090395) |
| 0.1 | 3.5 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.4 | 3.3 | GO:0017119 | Golgi transport complex(GO:0017119) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 24.9 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 12.6 | GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
| 0.0 | 12.5 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 10.7 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.8 | 8.9 | GO:0102360 | daphnetin 3-O-glucosyltransferase activity(GO:0102360) |
| 0.5 | 8.6 | GO:1900750 | glutathione binding(GO:0043295) oligopeptide binding(GO:1900750) |
| 1.1 | 7.9 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.1 | 7.8 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.8 | 5.9 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.3 | 5.9 | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.2 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.3 | 1.2 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.4 | 1.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 1.0 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.1 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.0 | 0.1 | PID SHP2 PATHWAY | SHP2 signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.9 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 1.2 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.4 | 1.1 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.3 | 0.8 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.1 | 0.5 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.1 | 0.4 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.1 | 0.3 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
| 0.0 | 0.3 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.1 | 0.1 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |
| 0.0 | 0.1 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |