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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G06839
Z-value: 0.65
Transcription factors associated with AT5G06839
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G06839
|
AT5G06839 | bZIP transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TGA10 | arTal_v1_Chr5_+_2120472_2120527 | 0.54 | 3.0e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 3.85 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 3.18 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_-_6042938_6043014 Show fit | 2.99 |
AT5G18270.2
AT5G18270.1 |
NAC domain containing protein 87 |
|
| arTal_v1_Chr2_+_6213972_6213972 Show fit | 2.83 |
AT2G14560.2
AT2G14560.1 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr2_+_6213617_6213676 Show fit | 2.77 |
AT2G14560.3
AT2G14560.4 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr3_-_7999552_7999552 Show fit | 2.60 |
AT3G22560.1
|
Acyl-CoA N-acyltransferases (NAT) superfamily protein |
|
| arTal_v1_Chr3_-_1055196_1055196 Show fit | 2.51 |
AT3G04060.1
|
NAC domain containing protein 46 |
|
| arTal_v1_Chr1_+_5389952_5389952 Show fit | 2.49 |
AT1G15670.1
|
Galactose oxidase/kelch repeat superfamily protein |
|
| arTal_v1_Chr4_-_2234689_2234689 Show fit | 2.40 |
AT4G04490.1
|
cysteine-rich RLK (RECEPTOR-like protein kinase) 36 |
|
| arTal_v1_Chr4_-_9368852_9368852 Show fit | 2.32 |
AT4G16640.1
|
Matrixin family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G06839
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.7 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.1 | 5.0 | GO:0042538 | hyperosmotic salinity response(GO:0042538) |
| 0.0 | 4.4 | GO:0006979 | response to oxidative stress(GO:0006979) |
| 0.2 | 3.6 | GO:0010112 | regulation of systemic acquired resistance(GO:0010112) |
| 0.0 | 3.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 3.4 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 1.1 | 3.2 | GO:0044236 | collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259) |
| 0.6 | 2.9 | GO:0019323 | pentose catabolic process(GO:0019323) |
| 0.5 | 2.5 | GO:0010271 | regulation of chlorophyll catabolic process(GO:0010271) regulation of tetrapyrrole catabolic process(GO:1901404) |
| 0.1 | 2.5 | GO:0098869 | cellular oxidant detoxification(GO:0098869) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.3 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.1 | 1.5 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.3 | 1.4 | GO:0001673 | male germ cell nucleus(GO:0001673) |
| 0.1 | 1.3 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
| 0.0 | 1.3 | GO:0000775 | chromosome, centromeric region(GO:0000775) |
| 0.0 | 1.0 | GO:0031201 | SNARE complex(GO:0031201) |
| 0.0 | 0.9 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
| 0.3 | 0.8 | GO:0034274 | Atg12-Atg5-Atg16 complex(GO:0034274) |
| 0.0 | 0.8 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 0.8 | GO:0005819 | spindle(GO:0005819) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.2 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 3.2 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
| 0.4 | 3.0 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.1 | 2.9 | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861) |
| 0.2 | 2.8 | GO:0032440 | 2-alkenal reductase [NAD(P)] activity(GO:0032440) |
| 0.1 | 2.3 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
| 0.7 | 2.0 | GO:0010297 | heteropolysaccharide binding(GO:0010297) |
| 0.5 | 2.0 | GO:0019172 | glyoxalase III activity(GO:0019172) |
| 0.0 | 2.0 | GO:0008080 | N-acetyltransferase activity(GO:0008080) |
| 0.2 | 1.9 | GO:0030291 | cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.4 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.0 | 0.3 | REACTOME PROTEIN FOLDING | Genes involved in Protein folding |