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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT5G05790

Z-value: 0.66

Transcription factors associated with AT5G05790

Gene Symbol Gene ID Gene Info
AT5G05790
AT5G05790 Duplicated homeodomain-like superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT5G05790arTal_v1_Chr5_-_1742161_17421860.203.1e-01Click!

Activity profile of AT5G05790 motif

Sorted Z-values of AT5G05790 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_-_15378416 3.19 AT5G38410.3
AT5G38410.2
RBCS3B
Ribulose bisphosphate carboxylase (small chain) family protein
Chr5_-_15378642 3.18 AT5G38410.1
RBCS3B
Ribulose bisphosphate carboxylase (small chain) family protein
Chr1_-_4682309 3.04 AT1G13650.3
AT1G13650.4
AT1G13650.2
AT1G13650.1
AT1G13650
hypothetical protein
Chr1_+_3157501 2.89 AT1G09750.1
AT1G09750
Eukaryotic aspartyl protease family protein
Chr3_-_197974 2.85 AT3G01500.1
CA1
carbonic anhydrase 1
Chr5_-_15382071 2.84 AT5G38420.1
RBCS2B
Ribulose bisphosphate carboxylase (small chain) family protein
Chr3_-_198160 2.82 AT3G01500.2
CA1
carbonic anhydrase 1
Chr3_-_198664 2.80 AT3G01500.3
CA1
carbonic anhydrase 1
Chr3_-_197564 2.76 AT3G01500.4
CA1
carbonic anhydrase 1
Chr5_+_4757856 2.62 AT5G14740.3
AT5G14740.6
AT5G14740.1
AT5G14740.7
AT5G14740.8
AT5G14740.2
AT5G14740.4
AT5G14740.5
CA2
carbonic anhydrase 2
Chr5_-_15385247 2.60 AT5G38430.2
AT5G38430.1
RBCS1B
Ribulose bisphosphate carboxylase (small chain) family protein
Chr5_+_8863224 2.53 AT5G25460.1
DGR2
transmembrane protein, putative (Protein of unknown function, DUF642)
Chr3_+_17228642 2.49 AT3G46780.1
PTAC16
plastid transcriptionally active 16
Chr1_-_4394343 2.47 AT1G12900.3
AT1G12900.4
AT1G12900.1
AT1G12900.2
AT1G12900.5
GAPA-2
glyceraldehyde 3-phosphate dehydrogenase A subunit 2
Chr1_-_10473502 2.41 AT1G29910.1
CAB3
chlorophyll A/B binding protein 3
Chr2_-_1800472 2.36 AT2G05070.1
LHCB2.2
photosystem II light harvesting complex protein 2.2
Chr5_+_4758921 2.29 AT5G14740.9
CA2
carbonic anhydrase 2
Chr5_-_4392227 2.25 AT5G13630.2
GUN5
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)
Chr5_-_4392429 2.25 AT5G13630.1
GUN5
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)
Chr3_-_9492655 2.22 AT3G25920.1
RPL15
ribosomal protein L15
Chr1_-_25049424 2.21 AT1G67090.2
RBCS1A
ribulose bisphosphate carboxylase small chain 1A
Chr1_-_25049667 2.21 AT1G67090.1
RBCS1A
ribulose bisphosphate carboxylase small chain 1A
Chr1_-_20648891 2.21 AT1G55330.1
AGP21
arabinogalactan protein 21
Chr3_+_5681380 2.16 AT3G16670.1
AT3G16670
Pollen Ole e 1 allergen and extensin family protein
Chr1_+_10371675 2.14 AT1G29660.1
AT1G29660
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_+_16476198 2.10 AT2G39470.1
AT2G39470.2
AT2G39470.3
PnsL1
PsbP-like protein 2
Chr3_-_8589754 1.94 AT3G23810.1
SAHH2
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr5_+_426226 1.94 AT5G02160.1
AT5G02160
transmembrane protein
Chr1_+_3008910 1.91 AT1G09310.1
AT1G09310
plant/protein (Protein of unknown function, DUF538)
Chr3_-_20341103 1.91 AT3G54890.3
AT3G54890.4
AT3G54890.2
AT3G54890.1
LHCA1
chlorophyll a-b binding protein 6
Chr3_+_6510982 1.90 AT3G18890.1
Tic62
NAD(P)-binding Rossmann-fold superfamily protein
Chr2_-_15137012 1.89 AT2G36050.1
OFP15
ovate family protein 15
Chr4_+_13725546 1.87 AT4G27440.2
AT4G27440.1
PORB
protochlorophyllide oxidoreductase B
Chr1_-_4530222 1.87 AT1G13250.1
GATL3
galacturonosyltransferase-like 3
Chr1_+_11532199 1.84 AT1G32060.1
PRK
phosphoribulokinase
Chr3_+_18049571 1.83 AT3G48730.1
GSA2
glutamate-1-semialdehyde 2,1-aminomutase 2
Chr1_+_898480 1.82 AT1G03600.1
PSB27
photosystem II family protein
Chr1_+_7886323 1.81 AT1G22330.1
AT1G22330
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_-_28423520 1.80 AT1G75690.1
LQY1
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Chr4_+_14149849 1.78 AT4G28660.1
AT4G28660.2
PSB28
photosystem II reaction center PSB28 protein
Chr1_-_20719165 1.78 AT1G55490.1
AT1G55490.2
AT1G55490.4
AT1G55490.3
AT1G55490.5
CPN60B
chaperonin 60 beta
Chr5_-_4171954 1.75 AT5G13140.1
AT5G13140
Pollen Ole e 1 allergen and extensin family protein
Chr4_-_17355891 1.72 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
AT4G36850
PQ-loop repeat family protein / transmembrane family protein
Chr5_-_14562863 1.71 AT5G36910.1
THI2.2
thionin 2.2
Chr2_-_15789605 1.67 AT2G37640.2
EXP3
Barwin-like endoglucanases superfamily protein
Chr5_+_16468327 1.66 AT5G41140.1
AT5G41140.2
AT5G41140
Myosin heavy chain-related protein
Chr4_+_12876822 1.65 AT4G25080.6
AT4G25080.5
AT4G25080.2
AT4G25080.1
AT4G25080.3
AT4G25080.4
CHLM
magnesium-protoporphyrin IX methyltransferase
Chr5_-_3183484 1.65 AT5G10150.3
AT5G10150.4
AT5G10150
UPSTREAM OF FLC protein (DUF966)
Chr2_+_17894796 1.65 AT2G43030.1
AT2G43030
Ribosomal protein L3 family protein
Chr4_-_13958107 1.64 AT4G28080.1
AT4G28080
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_-_3183984 1.63 AT5G10150.2
AT5G10150.1
AT5G10150
UPSTREAM OF FLC protein (DUF966)
Chr2_-_15790139 1.63 AT2G37640.1
EXP3
Barwin-like endoglucanases superfamily protein
Chr2_+_9636346 1.62 AT2G22670.1
AT2G22670.4
AT2G22670.2
AT2G22670.5
AT2G22670.3
IAA8
indoleacetic acid-induced protein 8
Chr5_-_17581275 1.61 AT5G43750.1
PnsB5
NAD(P)H dehydrogenase 18
Chr3_-_7557969 1.61 AT3G21460.1
AT3G21460
Glutaredoxin family protein
Chr1_-_30041952 1.61 AT1G79850.1
RPS17
ribosomal protein S17
Chr4_+_13388290 1.60 AT4G26520.2
AT4G26520.1
AT4G26520.3
FBA7
Aldolase superfamily protein
Chr2_-_1824480 1.58 AT2G05100.1
AT2G05100.2
LHCB2.1
photosystem II light harvesting complex protein 2.1
Chr3_-_17495033 1.57 AT3G47470.1
LHCA4
light-harvesting chlorophyll-protein complex I subunit A4
Chr5_-_25629615 1.56 AT5G64040.2
AT5G64040.1
PSAN
photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
Chr5_+_208866 1.56 AT5G01530.1
LHCB4.1
light harvesting complex photosystem II
Chr4_-_13398307 1.54 AT4G26540.1
AT4G26540
Leucine-rich repeat receptor-like protein kinase family protein
Chr1_-_6072129 1.54 AT1G17650.1
AT1G17650.2
GLYR2
glyoxylate reductase 2
Chr3_+_8610979 1.54 AT3G23840.1
AT3G23840
HXXXD-type acyl-transferase family protein
Chr2_+_1594588 1.52 AT2G04570.1
AT2G04570
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_-_15617149 1.52 AT3G43720.2
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_+_7521257 1.52 AT4G12800.2
AT4G12800.1
PSAL
photosystem I subunit l
Chr2_-_12277417 1.51 AT2G28630.2
KCS12
3-ketoacyl-CoA synthase 12
Chr3_-_15617309 1.50 AT3G43720.1
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_10810877 1.50 AT1G30520.4
AT1G30520.3
AAE14
acyl-activating enzyme 14
Chr2_+_6399621 1.48 AT2G14890.2
AGP9
arabinogalactan protein 9
Chr5_+_5907775 1.47 AT5G17870.1
PSRP6
plastid-specific 50S ribosomal protein 6
Chr5_+_18530834 1.47 AT5G45680.1
FKBP13
FK506-binding protein 13
Chr5_+_5907589 1.46 AT5G17870.2
PSRP6
plastid-specific 50S ribosomal protein 6
Chr2_-_12277245 1.46 AT2G28630.1
KCS12
3-ketoacyl-CoA synthase 12
Chr2_-_2588448 1.46 AT2G06520.1
PSBX
photosystem II subunit X
Chr1_+_10810397 1.45 AT1G30520.1
AT1G30520.2
AAE14
acyl-activating enzyme 14
Chr4_+_16708552 1.45 AT4G35100.2
PIP3
plasma membrane intrinsic protein 3
Chr4_+_16708361 1.45 AT4G35100.1
PIP3
plasma membrane intrinsic protein 3
Chr5_-_20940895 1.44 AT5G51550.1
EXL3
EXORDIUM like 3
Chr3_+_22745514 1.43 AT3G61470.1
LHCA2
photosystem I light harvesting complex protein
Chr4_-_14204061 1.42 AT4G28750.1
PSAE-1
Photosystem I reaction centre subunit IV / PsaE protein
Chr1_+_27991165 1.42 AT1G74470.1
AT1G74470
Pyridine nucleotide-disulfide oxidoreductase family protein
Chr1_+_24149208 1.41 AT1G65010.1
AT1G65010
WEB family protein (DUF827)
Chr4_+_13388719 1.40 AT4G26520.4
FBA7
Aldolase superfamily protein
Chr4_+_10651744 1.39 AT4G19530.1
AT4G19530.2
AT4G19530
disease resistance protein (TIR-NBS-LRR class) family
Chr2_-_1149261 1.38 AT2G03750.1
AT2G03750
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_4886962 1.37 AT4G08040.1
ACS11
1-aminocyclopropane-1-carboxylate synthase 11
Chr2_+_6399405 1.36 AT2G14890.1
AGP9
arabinogalactan protein 9
Chr2_+_15980848 1.36 AT2G38140.1
PSRP4
plastid-specific ribosomal protein 4
Chr1_-_19052582 1.35 AT1G51400.1
AT1G51400
Photosystem II 5 kD protein
Chr1_-_25833966 1.34 AT1G68780.1
AT1G68780
RNI-like superfamily protein
Chr1_-_22308289 1.34 AT1G60550.1
ECHID
enoyl-CoA hydratase/isomerase D
Chr1_-_5115497 1.33 AT1G14840.2
AT1G14840.1
MAP70-4
microtubule-associated proteins 70-4
Chr4_+_11663186 1.31 AT4G22010.1
sks4
SKU5 similar 4
Chr5_-_19899301 1.30 AT5G49100.1
AT5G49100
vitellogenin-like protein
Chr2_-_9699915 1.29 AT2G22795.3
AT2G22795.2
AT2G22795.1
AT2G22795
hypothetical protein
Chr1_-_15607966 1.29 AT1G41830.1
SKS6
SKU5-similar 6
Chr1_-_1503853 1.28 AT1G05190.1
emb2394
Ribosomal protein L6 family
Chr5_+_1130031 1.28 AT5G04140.2
GLU1
glutamate synthase 1
Chr5_+_7529292 1.28 AT5G22640.3
AT5G22640.1
AT5G22640.2
emb1211
MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein
Chr4_-_2352025 1.28 AT4G04640.1
ATPC1
ATPase, F1 complex, gamma subunit protein
Chr5_+_1129785 1.28 AT5G04140.1
GLU1
glutamate synthase 1
Chr5_+_7778017 1.26 AT5G23120.2
AT5G23120.1
HCF136
photosystem II stability/assembly factor, chloroplast (HCF136)
Chr5_-_23406479 1.25 AT5G57780.1
P1R1
transcription factor
Chr1_+_29413874 1.25 AT1G78170.1
AT1G78170
E3 ubiquitin-protein ligase
Chr1_+_7696427 1.25 AT1G21910.1
DREB26
Integrase-type DNA-binding superfamily protein
Chr5_+_16151772 1.25 AT5G40380.3
AT5G40380.2
CRK42
cysteine-rich RLK (RECEPTOR-like protein kinase) 42
Chr1_-_27348256 1.25 AT1G72640.3
AT1G72640.4
AT1G72640.2
AT1G72640.1
AT1G72640
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_23487091 1.25 AT1G63310.1
AT1G63310
hypothetical protein
Chr5_-_7242857 1.23 AT5G21920.2
AT5G21920.1
YLMG2
YGGT family protein
Chr1_-_4807517 1.22 AT1G14030.1
LSMT-L
Rubisco methyltransferase family protein
Chr1_+_12188678 1.22 AT1G33610.1
AT1G33610
Leucine-rich repeat (LRR) family protein
Chr1_+_24229063 1.22 AT1G65230.1
AT1G65230
transmembrane protein, putative (DUF2358)
Chr1_+_26705420 1.18 AT1G70820.1
AT1G70820.2
AT1G70820
phosphoglucomutase, putative / glucose phosphomutase
Chr5_+_8042853 1.18 AT5G23860.1
AT5G23860.2
TUB8
tubulin beta 8
Chr3_-_9255083 1.17 AT3G25500.1
AFH1
formin homology 1
Chr2_+_17527167 1.17 AT2G41990.1
AT2G41990
late embryogenesis abundant protein
Chr2_-_13797237 1.17 AT2G32500.2
AT2G32500.1
AT2G32500
Stress responsive alpha-beta barrel domain protein
Chr1_+_18504757 1.16 AT1G49975.1
AT1G49975
photosystem I reaction center subunit N
Chr2_-_183639 1.16 AT2G01420.3
AT2G01420.1
AT2G01420.2
PIN4
Auxin efflux carrier family protein
Chr1_+_27778984 1.15 AT1G73870.1
BBX16
B-box type zinc finger protein with CCT domain-containing protein
Chr3_+_10524181 1.15 AT3G28220.1
AT3G28220
TRAF-like family protein
Chr1_+_24057297 1.15 AT1G64770.1
AT1G64770.2
PnsB2
NDH-dependent cyclic electron flow 1
Chr3_+_2201432 1.15 AT3G06980.1
AT3G06980
DEA(D/H)-box RNA helicase family protein
Chr4_-_1230164 1.14 AT4G02770.1
PSAD-1
photosystem I subunit D-1
Chr5_+_18697235 1.14 AT5G46110.2
AT5G46110.1
AT5G46110.3
AT5G46110.4
APE2
Glucose-6-phosphate/phosphate translocator-like protein
Chr5_-_15828035 1.14 AT5G39530.1
AT5G39530.2
AT5G39530
hypothetical protein (DUF1997)
Chr2_+_8059106 1.13 AT2G18560.1
AT2G18560
UDP-Glycosyltransferase superfamily protein
Chr5_-_3728726 1.13 AT5G11590.1
TINY2
Integrase-type DNA-binding superfamily protein
Chr1_-_6487153 1.13 AT1G18810.1
AT1G18810
phytochrome kinase substrate-like protein
Chr3_-_10129937 1.12 AT3G27360.1
AT3G27360
Histone superfamily protein
Chr1_-_11774117 1.11 AT1G32550.2
FdC2
2Fe-2S ferredoxin-like superfamily protein
Chr2_-_5051613 1.11 AT2G12462.1
AT2G12462
sterile alpha motif (SAM) domain protein
Chr5_+_25037191 1.11 AT5G62350.1
AT5G62350
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr1_+_18802552 1.09 AT1G50732.1
AT1G50732
transmembrane protein
Chr4_-_18538506 1.09 AT4G39970.1
AT4G39970
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_28159317 1.09 AT1G74970.1
RPS9
ribosomal protein S9
Chr1_+_17485576 1.09 AT1G47580.1
DYW1
Pentatricopeptide repeat (PPR) superfamily protein
Chr5_-_24116220 1.09 AT5G59870.1
HTA6
histone H2A 6
Chr1_-_11774294 1.08 AT1G32550.1
FdC2
2Fe-2S ferredoxin-like superfamily protein
Chr5_+_25016860 1.07 AT5G62280.1
AT5G62280
DUF1442 family protein (DUF1442)
Chr2_+_12000239 1.07 AT2G28150.2
AT2G28150.3
AT2G28150
UPSTREAM OF FLC protein (DUF966)
Chr4_+_6768614 1.07 AT4G11100.1
AT4G11100.2
AT4G11100
gelsolin protein
Chr2_+_417427 1.06 AT2G01910.2
ATMAP65-6
Microtubule associated protein (MAP65/ASE1) family protein
Chr2_+_15117015 1.05 AT2G36000.2
AT2G36000.1
EMB3114
Mitochondrial transcription termination factor family protein
Chr3_-_20797670 1.05 AT3G56040.1
UGP3
UDP-glucose pyrophosphorylase 3
Chr1_+_24057063 1.05 AT1G64770.3
PnsB2
NDH-dependent cyclic electron flow 1
Chr5_+_16151522 1.05 AT5G40380.1
CRK42
cysteine-rich RLK (RECEPTOR-like protein kinase) 42
Chr2_+_9449930 1.05 AT2G22230.1
AT2G22230
Thioesterase superfamily protein
Chr1_+_19857351 1.04 AT1G53250.1
AT1G53250
histone-lysine N-methyltransferase, H3 lysine-79 specific-like protein
Chr2_+_17582673 1.04 AT2G42190.2
AT2G42190.1
AT2G42190.3
AT2G42190
rho GTPase-activating gacO-like protein
Chr3_-_18892508 1.04 AT3G50820.1
PSBO2
photosystem II subunit O-2
Chr2_-_5776289 1.04 AT2G13820.2
AT2G13820.1
AT2G13820.3
XYP2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_25889074 1.03 AT1G68870.1
SOFL2
SOB five-like 2
Chr2_-_13850998 1.02 AT2G32640.1
AT2G32640.2
AT2G32640
Lycopene beta/epsilon cyclase protein
Chr1_+_26220190 1.02 AT1G69700.1
HVA22C
HVA22 homologue C
Chr2_+_416021 1.01 AT2G01910.1
ATMAP65-6
Microtubule associated protein (MAP65/ASE1) family protein
Chr4_-_5797375 1.01 AT4G09040.2
AT4G09040.1
AT4G09040
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_-_22515458 1.00 AT5G55570.2
AT5G55570.1
AT5G55570
transmembrane protein
Chr4_+_11424666 1.00 AT4G21445.1
AT4G21445
receptor-interacting protein
Chr4_-_12674106 1.00 AT4G24540.1
AGL24
AGAMOUS-like 24
Chr5_+_26573964 1.00 AT5G66590.1
AT5G66590
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr4_-_15574737 0.99 AT4G32260.1
PDE334
ATPase, F0 complex, subunit B/B', bacterial/chloroplast
Chr1_-_18930811 0.99 AT1G51080.1
AT1G51080
golgin family A protein
Chr4_+_8925571 0.99 AT4G15660.1
AT4G15660
Thioredoxin superfamily protein
Chr5_+_22716917 0.99 AT5G56100.1
AT5G56100
glycine-rich protein / oleosin
Chr5_+_26281642 0.98 AT5G65700.1
AT5G65700.2
BAM1
Leucine-rich receptor-like protein kinase family protein
Chr4_+_11907355 0.97 AT4G22620.1
AT4G22620
SAUR-like auxin-responsive protein family
Chr1_-_8310916 0.97 AT1G23390.1
AT1G23390
Kelch repeat-containing F-box family protein
Chr5_-_689955 0.97 AT5G02940.1
AT5G02940.2
AT5G02940
ion channel POLLUX-like protein, putative (DUF1012)
Chr5_+_7168106 0.96 AT5G21100.1
AT5G21100
Plant L-ascorbate oxidase
Chr1_-_23251195 0.95 AT1G62780.1
AT1G62780
dimethylallyl, adenosine tRNA methylthiotransferase
Chr3_+_19581049 0.95 AT3G52840.2
AT3G52840.1
BGAL2
beta-galactosidase 2
Chr5_+_26568572 0.94 AT5G66570.1
PSBO1
PS II oxygen-evolving complex 1
Chr2_-_18778374 0.94 AT2G45560.3
AT2G45560.2
CYP76C1
cytochrome P450, family 76, subfamily C, polypeptide 1
Chr4_-_8188811 0.94 AT4G14200.1
AT4G14200
Pentatricopeptide repeat (PPR) superfamily protein
Chr1_-_26434538 0.94 AT1G70200.1
AT1G70200
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_+_15641442 0.94 AT5G39080.1
AT5G39080
HXXXD-type acyl-transferase family protein
Chr2_-_18778676 0.93 AT2G45560.1
CYP76C1
cytochrome P450, family 76, subfamily C, polypeptide 1
Chr1_-_224351 0.93 AT1G01610.1
GPAT4
glycerol-3-phosphate acyltransferase 4
Chr5_-_24661241 0.93 AT5G61330.1
AT5G61330.2
AT5G61330
rRNA processing protein-like protein
Chr4_+_8517100 0.93 AT4G14870.1
SECE1
secE/sec61-gamma protein transport protein
Chr3_+_6313471 0.93 AT3G18390.1
EMB1865
CRS1 / YhbY (CRM) domain-containing protein
Chr4_-_13827928 0.93 AT4G27700.1
AT4G27700
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr2_-_2272452 0.91 AT2G05920.1
AT2G05920
Subtilase family protein
Chr1_+_29178705 0.91 AT1G77640.1
AT1G77640
Integrase-type DNA-binding superfamily protein
Chr1_+_17835032 0.91 AT1G48280.1
AT1G48280
hydroxyproline-rich glycoprotein family protein
Chr4_+_10879026 0.91 AT4G20130.2
PTAC14
plastid transcriptionally active 14
Chr3_-_9428277 0.90 AT3G25805.1
AT3G25805
transmembrane protein
Chr4_-_12937236 0.90 AT4G25260.1
AT4G25260
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr5_-_9289003 0.90 AT5G26742.2
AT5G26742.1
emb1138
DEAD box RNA helicase (RH3)
Chr5_-_9288727 0.90 AT5G26742.3
emb1138
DEAD box RNA helicase (RH3)
Chr4_+_10989910 0.89 AT4G20360.1
AT4G20360.2
RABE1b
RAB GTPase homolog E1B
Chr4_+_11555503 0.89 AT4G21750.4
AT4G21750.3
ATML1
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Chr1_-_23812725 0.89 AT1G64150.1
AT1G64150
Uncharacterized protein family (UPF0016)
Chr1_+_13026206 0.89 AT1G35420.1
AT1G35420.2
AT1G35420.3
AT1G35420
alpha/beta-Hydrolases superfamily protein
Chr4_+_10878817 0.88 AT4G20130.1
PTAC14
plastid transcriptionally active 14
Chr2_+_16745628 0.88 AT2G40100.1
AT2G40100.2
LHCB4.3
light harvesting complex photosystem II
Chr2_+_16630411 0.87 AT2G39850.1
AT2G39850
Subtilisin-like serine endopeptidase family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G05790

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 16.1 GO:0015976 carbon utilization(GO:0015976)
0.7 3.9 GO:1903428 photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428)
0.6 2.6 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.5 9.8 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.5 2.1 GO:0046498 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.5 1.4 GO:0090058 metaxylem development(GO:0090058)
0.4 1.3 GO:0009233 menaquinone metabolic process(GO:0009233) menaquinone biosynthetic process(GO:0009234)
0.4 2.5 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.4 2.0 GO:0042549 photosystem II stabilization(GO:0042549)
0.4 1.1 GO:0015717 triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436)
0.4 3.0 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.4 4.3 GO:0018026 peptidyl-lysine monomethylation(GO:0018026)
0.4 3.9 GO:0010206 photosystem II repair(GO:0010206)
0.3 2.1 GO:0031116 positive regulation of microtubule polymerization(GO:0031116)
0.3 1.0 GO:0010220 positive regulation of vernalization response(GO:0010220)
0.3 4.3 GO:0019253 carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253)
0.3 0.9 GO:0071242 cellular response to ammonium ion(GO:0071242)
0.3 0.9 GO:0000050 urea cycle(GO:0000050)
0.3 3.0 GO:0042374 phylloquinone biosynthetic process(GO:0042372) phylloquinone metabolic process(GO:0042374)
0.3 0.9 GO:0071156 regulation of cell cycle arrest(GO:0071156) positive regulation of cell cycle arrest(GO:0071158)
0.3 5.0 GO:0006949 syncytium formation(GO:0006949)
0.3 0.5 GO:0051211 anisotropic cell growth(GO:0051211)
0.3 0.8 GO:0035017 cuticle pattern formation(GO:0035017)
0.3 0.8 GO:0080051 cutin transport(GO:0080051)
0.2 1.0 GO:0010480 microsporocyte differentiation(GO:0010480)
0.2 0.7 GO:0043987 histone-serine phosphorylation(GO:0035404) histone H3-S10 phosphorylation(GO:0043987)
0.2 1.2 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.2 1.2 GO:0051329 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.2 3.0 GO:0032544 plastid translation(GO:0032544)
0.2 0.7 GO:1990532 stress response to nickel ion(GO:1990532)
0.2 3.8 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.2 0.2 GO:0000480 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000472) endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000480)
0.2 1.3 GO:0009772 photosynthetic electron transport in photosystem II(GO:0009772)
0.2 1.7 GO:0036388 pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299)
0.2 0.6 GO:0007000 nucleolus organization(GO:0007000)
0.2 14.1 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.2 0.6 GO:0006557 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
0.2 1.0 GO:0019742 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.2 0.4 GO:0008295 spermidine biosynthetic process(GO:0008295)
0.2 0.6 GO:1902446 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.2 0.4 GO:0045827 negative regulation of isoprenoid metabolic process(GO:0045827)
0.2 1.1 GO:0006968 cellular defense response(GO:0006968)
0.2 0.6 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.2 1.3 GO:0071490 far-red light signaling pathway(GO:0010018) cellular response to far red light(GO:0071490)
0.2 3.0 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.2 1.9 GO:1901348 positive regulation of secondary cell wall biogenesis(GO:1901348)
0.2 0.5 GO:0090549 response to carbon starvation(GO:0090549)
0.2 1.1 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.2 0.6 GO:0097298 regulation of nucleus size(GO:0097298)
0.1 0.7 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.1 0.4 GO:0036292 DNA rewinding(GO:0036292)
0.1 2.1 GO:0010315 auxin efflux(GO:0010315)
0.1 0.6 GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000447)
0.1 16.3 GO:0015979 photosynthesis(GO:0015979)
0.1 4.0 GO:0010143 cutin biosynthetic process(GO:0010143)
0.1 0.5 GO:0009831 plant-type cell wall modification involved in multidimensional cell growth(GO:0009831)
0.1 0.4 GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.1 0.4 GO:0090322 regulation of superoxide metabolic process(GO:0090322)
0.1 0.4 GO:0070212 protein ADP-ribosylation(GO:0006471) protein poly-ADP-ribosylation(GO:0070212)
0.1 0.5 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.1 0.6 GO:0034051 negative regulation of plant-type hypersensitive response(GO:0034051)
0.1 0.6 GO:0046493 lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271)
0.1 0.4 GO:0006057 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506) response to cobalt ion(GO:0032025)
0.1 2.4 GO:0042044 water transport(GO:0006833) fluid transport(GO:0042044)
0.1 0.3 GO:0090143 nucleoid organization(GO:0090143)
0.1 1.1 GO:0033619 membrane protein proteolysis(GO:0033619)
0.1 0.3 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.1 0.8 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.1 3.2 GO:0042335 cuticle development(GO:0042335)
0.1 1.3 GO:2000896 amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.1 0.5 GO:2000580 regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.1 1.1 GO:0080028 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.1 0.3 GO:0043268 response to cation stress(GO:0043157) positive regulation of potassium ion transport(GO:0043268)
0.1 0.6 GO:0009052 pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.1 0.6 GO:0006013 mannose metabolic process(GO:0006013)
0.1 0.5 GO:0007349 cellularization(GO:0007349)
0.1 0.6 GO:0045723 positive regulation of fatty acid biosynthetic process(GO:0045723)
0.1 1.3 GO:0055069 zinc ion homeostasis(GO:0055069)
0.1 0.6 GO:0000966 RNA 5'-end processing(GO:0000966)
0.1 0.5 GO:0007142 male meiosis II(GO:0007142)
0.1 1.5 GO:0000373 Group II intron splicing(GO:0000373)
0.1 0.2 GO:0034982 mitochondrial protein processing(GO:0034982)
0.1 0.6 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.1 0.3 GO:0070206 protein trimerization(GO:0070206)
0.1 2.3 GO:0008544 epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855)
0.1 1.6 GO:1900865 chloroplast RNA modification(GO:1900865)
0.1 0.7 GO:0009854 oxidative photosynthetic carbon pathway(GO:0009854)
0.1 0.3 GO:0034764 positive regulation of transmembrane transport(GO:0034764)
0.1 1.1 GO:0070828 heterochromatin organization(GO:0070828)
0.1 1.0 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.1 0.8 GO:0010098 suspensor development(GO:0010098)
0.1 0.3 GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic(GO:0034414) mitochondrial tRNA processing(GO:0090646)
0.1 0.6 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.1 0.5 GO:0051095 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.1 1.0 GO:0009641 shade avoidance(GO:0009641)
0.1 1.3 GO:0009870 defense response signaling pathway, resistance gene-dependent(GO:0009870)
0.1 0.3 GO:1900370 positive regulation of RNA interference(GO:1900370)
0.1 0.6 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.1 0.3 GO:0046416 D-amino acid metabolic process(GO:0046416)
0.1 0.3 GO:0002164 nematode larval development(GO:0002119) larval development(GO:0002164) regulation of nematode larval development(GO:0061062)
0.1 0.4 GO:0043066 apoptotic process(GO:0006915) regulation of apoptotic process(GO:0042981) negative regulation of apoptotic process(GO:0043066)
0.1 0.5 GO:0006552 leucine catabolic process(GO:0006552)
0.1 0.4 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 0.7 GO:1990937 xylan acetylation(GO:1990937)
0.1 0.8 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.1 0.5 GO:2000762 regulation of phenylpropanoid metabolic process(GO:2000762)
0.1 0.4 GO:0006569 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.1 0.3 GO:0001120 DNA-templated transcriptional open complex formation(GO:0001112) transcriptional open complex formation at RNA polymerase II promoter(GO:0001113) protein-DNA complex remodeling(GO:0001120) macromolecular complex remodeling(GO:0034367)
0.1 0.4 GO:0033206 meiotic cytokinesis(GO:0033206)
0.1 0.3 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.1 0.4 GO:0044211 CTP salvage(GO:0044211)
0.1 1.8 GO:0042026 protein refolding(GO:0042026)
0.1 1.4 GO:0044070 regulation of anion transport(GO:0044070)
0.1 0.3 GO:0019427 acetyl-CoA biosynthetic process from acetate(GO:0019427)
0.1 0.4 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.1 0.4 GO:0008216 spermidine metabolic process(GO:0008216)
0.1 1.4 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.1 0.6 GO:0042793 transcription from plastid promoter(GO:0042793)
0.1 0.2 GO:0045005 DNA-dependent DNA replication maintenance of fidelity(GO:0045005)
0.1 1.9 GO:0009902 chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667)
0.1 0.6 GO:0006596 polyamine biosynthetic process(GO:0006596)
0.1 0.2 GO:0010597 green leaf volatile biosynthetic process(GO:0010597)
0.1 0.2 GO:0016572 histone phosphorylation(GO:0016572)
0.1 1.6 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.1 0.4 GO:0046621 negative regulation of organ growth(GO:0046621)
0.1 1.1 GO:0009638 phototropism(GO:0009638)
0.1 2.0 GO:0009682 induced systemic resistance(GO:0009682)
0.1 1.0 GO:0015985 ATP biosynthetic process(GO:0006754) energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.1 0.2 GO:0009305 protein biotinylation(GO:0009305)
0.0 0.3 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.0 0.2 GO:0000393 spliceosomal conformational changes to generate catalytic conformation(GO:0000393)
0.0 0.1 GO:0080168 abscisic acid transport(GO:0080168)
0.0 0.3 GO:0006654 phosphatidic acid biosynthetic process(GO:0006654)
0.0 0.9 GO:0009306 protein secretion(GO:0009306)
0.0 2.5 GO:0007131 reciprocal meiotic recombination(GO:0007131) reciprocal DNA recombination(GO:0035825)
0.0 0.3 GO:0000244 spliceosomal tri-snRNP complex assembly(GO:0000244)
0.0 0.2 GO:0006023 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203) UDP-glucuronate metabolic process(GO:0046398)
0.0 0.1 GO:0006432 phenylalanyl-tRNA aminoacylation(GO:0006432)
0.0 1.4 GO:0010193 response to ozone(GO:0010193)
0.0 0.5 GO:0006465 signal peptide processing(GO:0006465)
0.0 0.8 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.0 0.2 GO:0080119 ER body organization(GO:0080119)
0.0 0.3 GO:0007021 tubulin complex assembly(GO:0007021)
0.0 1.2 GO:0045168 cell-cell signaling involved in cell fate commitment(GO:0045168)
0.0 0.4 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.9 GO:0016556 mRNA modification(GO:0016556)
0.0 0.4 GO:0010951 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.1 GO:0001560 regulation of cell growth by extracellular stimulus(GO:0001560)
0.0 0.1 GO:0006435 threonyl-tRNA aminoacylation(GO:0006435)
0.0 0.1 GO:0030031 cell projection organization(GO:0030030) cell projection assembly(GO:0030031)
0.0 0.4 GO:0005978 glycogen biosynthetic process(GO:0005978)
0.0 0.2 GO:0080113 regulation of seed growth(GO:0080113)
0.0 0.2 GO:0010344 seed oilbody biogenesis(GO:0010344)
0.0 0.3 GO:0090114 COPII-coated vesicle budding(GO:0090114)
0.0 0.8 GO:0045492 xylan biosynthetic process(GO:0045492)
0.0 0.1 GO:0006430 lysyl-tRNA aminoacylation(GO:0006430)
0.0 2.3 GO:0009736 cytokinin-activated signaling pathway(GO:0009736)
0.0 0.3 GO:0033238 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.0 0.1 GO:0000492 box C/D snoRNP assembly(GO:0000492)
0.0 0.6 GO:0005983 starch catabolic process(GO:0005983)
0.0 0.5 GO:0046785 microtubule polymerization(GO:0046785)
0.0 0.4 GO:0015749 monosaccharide transport(GO:0015749)
0.0 1.4 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.5 GO:0098586 virus induced gene silencing(GO:0009616) modulation by symbiont of RNA levels in host(GO:0052018) modulation of RNA levels in other organism involved in symbiotic interaction(GO:0052249) cellular response to virus(GO:0098586)
0.0 0.1 GO:0010343 singlet oxygen-mediated programmed cell death(GO:0010343)
0.0 0.1 GO:0071244 cellular response to carbon dioxide(GO:0071244)
0.0 0.3 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.0 0.1 GO:0050665 hydrogen peroxide biosynthetic process(GO:0050665)
0.0 0.1 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.0 0.9 GO:0009692 ethylene metabolic process(GO:0009692) ethylene biosynthetic process(GO:0009693) cellular alkene metabolic process(GO:0043449) alkene biosynthetic process(GO:0043450) olefin metabolic process(GO:1900673) olefin biosynthetic process(GO:1900674)
0.0 0.3 GO:0042177 negative regulation of protein catabolic process(GO:0042177)
0.0 0.4 GO:0006857 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 0.6 GO:0050826 response to freezing(GO:0050826)
0.0 0.1 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.0 0.2 GO:0033314 mitotic DNA replication checkpoint(GO:0033314)
0.0 0.6 GO:0009294 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.0 0.5 GO:0019915 lipid storage(GO:0019915)
0.0 1.4 GO:0007018 microtubule-based movement(GO:0007018)
0.0 0.3 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.0 0.2 GO:0044375 regulation of peroxisome size(GO:0044375)
0.0 0.2 GO:0015804 neutral amino acid transport(GO:0015804)
0.0 1.0 GO:0022900 electron transport chain(GO:0022900)
0.0 0.0 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.0 0.5 GO:0006891 intra-Golgi vesicle-mediated transport(GO:0006891)
0.0 1.9 GO:0080167 response to karrikin(GO:0080167)
0.0 0.3 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.0 0.7 GO:0006906 vesicle fusion(GO:0006906)
0.0 0.1 GO:0035019 somatic stem cell population maintenance(GO:0035019)
0.0 0.1 GO:0010037 response to carbon dioxide(GO:0010037)
0.0 0.4 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.2 GO:0006265 DNA topological change(GO:0006265)
0.0 0.5 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 0.2 GO:0036065 fucosylation(GO:0036065)
0.0 1.0 GO:0048544 recognition of pollen(GO:0048544)
0.0 0.1 GO:0051571 positive regulation of histone H3-K4 methylation(GO:0051571)
0.0 1.2 GO:0009658 chloroplast organization(GO:0009658)
0.0 0.3 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.5 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.0 0.3 GO:0034314 Arp2/3 complex-mediated actin nucleation(GO:0034314)
0.0 0.3 GO:0006739 NADP metabolic process(GO:0006739)
0.0 0.1 GO:0006488 dolichol-linked oligosaccharide biosynthetic process(GO:0006488)
0.0 0.1 GO:0070131 regulation of mitochondrial translation(GO:0070129) positive regulation of mitochondrial translation(GO:0070131)
0.0 1.0 GO:0045490 pectin catabolic process(GO:0045490)
0.0 0.4 GO:0048510 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 4.5 GO:0010007 magnesium chelatase complex(GO:0010007)
0.6 11.0 GO:0009522 photosystem I(GO:0009522)
0.4 1.6 GO:0009317 acetyl-CoA carboxylase complex(GO:0009317)
0.4 15.3 GO:0010319 stromule(GO:0010319)
0.3 2.3 GO:0000311 plastid large ribosomal subunit(GO:0000311)
0.3 6.5 GO:0009508 plastid chromosome(GO:0009508)
0.3 1.2 GO:0016461 unconventional myosin complex(GO:0016461)
0.3 2.4 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.3 0.9 GO:1990298 bub1-bub3 complex(GO:1990298)
0.3 1.4 GO:0034425 etioplast envelope(GO:0034425) etioplast membrane(GO:0034426)
0.3 3.5 GO:0098807 chloroplast thylakoid membrane protein complex(GO:0098807)
0.2 0.7 GO:0009925 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.2 7.3 GO:0009521 photosystem(GO:0009521)
0.2 10.1 GO:0031977 thylakoid lumen(GO:0031977)
0.2 0.6 GO:0005652 nuclear lamina(GO:0005652)
0.2 8.9 GO:0010287 plastoglobule(GO:0010287)
0.2 0.7 GO:0032133 chromosome passenger complex(GO:0032133)
0.2 0.8 GO:0009897 external side of plasma membrane(GO:0009897)
0.2 0.9 GO:0071818 BAT3 complex(GO:0071818)
0.1 1.5 GO:0042555 MCM complex(GO:0042555)
0.1 1.0 GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)(GO:0045263)
0.1 0.1 GO:0030870 Mre11 complex(GO:0030870)
0.1 2.2 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.1 0.5 GO:0010330 cellulose synthase complex(GO:0010330) microtubule end(GO:1990752)
0.1 1.1 GO:0098553 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.1 0.7 GO:0009360 DNA polymerase III complex(GO:0009360)
0.1 0.5 GO:0042645 mitochondrial nucleoid(GO:0042645)
0.1 0.4 GO:0043186 P granule(GO:0043186) pole plasm(GO:0045495) germ plasm(GO:0060293)
0.1 34.8 GO:0009579 thylakoid(GO:0009579)
0.1 0.8 GO:0071339 MLL1/2 complex(GO:0044665) MLL1 complex(GO:0071339)
0.1 1.0 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.1 0.5 GO:0030286 dynein complex(GO:0030286)
0.1 0.7 GO:0005787 signal peptidase complex(GO:0005787)
0.1 2.1 GO:0009574 preprophase band(GO:0009574)
0.1 1.2 GO:0045298 tubulin complex(GO:0045298)
0.1 1.2 GO:0042644 chloroplast nucleoid(GO:0042644)
0.1 1.4 GO:0009531 secondary cell wall(GO:0009531)
0.1 0.2 GO:0034457 Mpp10 complex(GO:0034457)
0.1 0.8 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.1 0.4 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.1 1.4 GO:0030686 90S preribosome(GO:0030686)
0.1 0.5 GO:0005664 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.1 0.6 GO:0070531 BRCA1-A complex(GO:0070531)
0.1 0.8 GO:0055028 cortical microtubule(GO:0055028)
0.1 3.2 GO:0005875 microtubule associated complex(GO:0005875)
0.1 1.1 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.1 1.1 GO:0000792 heterochromatin(GO:0000792)
0.1 0.6 GO:0035861 site of double-strand break(GO:0035861)
0.1 8.6 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.0 0.3 GO:0005673 transcription factor TFIIE complex(GO:0005673)
0.0 5.7 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.2 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.0 0.2 GO:0005853 eukaryotic translation elongation factor 1 complex(GO:0005853)
0.0 0.2 GO:0008622 epsilon DNA polymerase complex(GO:0008622)
0.0 0.6 GO:0016459 myosin complex(GO:0016459)
0.0 0.4 GO:0010168 ER body(GO:0010168)
0.0 0.2 GO:0000796 condensin complex(GO:0000796)
0.0 17.9 GO:0009570 chloroplast stroma(GO:0009570)
0.0 0.2 GO:0030663 COPI vesicle coat(GO:0030126) COPI-coated vesicle membrane(GO:0030663)
0.0 3.6 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 4.5 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.2 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.0 0.3 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 0.2 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.0 0.1 GO:0031209 SCAR complex(GO:0031209)
0.0 2.8 GO:0048046 apoplast(GO:0048046)
0.0 0.1 GO:0000314 organellar small ribosomal subunit(GO:0000314)
0.0 0.5 GO:0005643 nuclear pore(GO:0005643)
0.0 0.3 GO:0005744 mitochondrial inner membrane presequence translocase complex(GO:0005744)
0.0 0.3 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 0.5 GO:0005797 Golgi medial cisterna(GO:0005797)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.7 16.2 GO:0016984 ribulose-bisphosphate carboxylase activity(GO:0016984)
0.9 2.6 GO:0016643 glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643)
0.8 2.5 GO:0047100 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity(GO:0047100)
0.8 4.5 GO:0016851 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.7 2.1 GO:0004013 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.7 2.0 GO:0010242 oxygen evolving activity(GO:0010242)
0.6 1.9 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
0.6 3.0 GO:0031956 medium-chain fatty acid-CoA ligase activity(GO:0031956)
0.5 2.2 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.5 1.6 GO:0009374 biotin binding(GO:0009374)
0.5 13.7 GO:0016168 chlorophyll binding(GO:0016168)
0.5 15.7 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.4 2.5 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.4 1.1 GO:0008311 phosphodiesterase I activity(GO:0004528) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
0.3 1.6 GO:0015434 cadmium-transporting ATPase activity(GO:0015434) zinc-exporting ATPase activity(GO:0016463)
0.3 1.5 GO:0030267 glyoxylate reductase (NADP) activity(GO:0030267)
0.3 1.4 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.3 1.3 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.2 1.4 GO:0015288 porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.2 1.8 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.2 3.0 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.2 0.6 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.2 0.4 GO:0004766 spermidine synthase activity(GO:0004766)
0.2 1.0 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.2 0.6 GO:0071771 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.2 0.8 GO:0015245 fatty acid transporter activity(GO:0015245)
0.2 0.7 GO:0035174 histone serine kinase activity(GO:0035174) histone kinase activity (H3-S10 specific)(GO:0035175)
0.2 0.9 GO:0050113 inositol oxygenase activity(GO:0050113)
0.2 0.7 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.2 0.2 GO:0035173 histone kinase activity(GO:0035173)
0.2 1.3 GO:0009011 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.1 0.6 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.1 2.9 GO:0015250 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.1 1.9 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.1 3.0 GO:0102336 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.1 0.4 GO:1990404 protein ADP-ribosylase activity(GO:1990404)
0.1 1.0 GO:0042299 lupeol synthase activity(GO:0042299)
0.1 0.6 GO:0004781 sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.1 1.1 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.1 1.4 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.1 0.4 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.1 0.6 GO:0016768 spermine synthase activity(GO:0016768)
0.1 0.4 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.1 0.6 GO:0031177 phosphopantetheine binding(GO:0031177)
0.1 0.5 GO:0045502 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.1 0.6 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.1 0.3 GO:0042577 sphingosine-1-phosphate phosphatase activity(GO:0042392) lipid phosphatase activity(GO:0042577)
0.1 0.7 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.1 0.3 GO:0036361 racemase and epimerase activity, acting on amino acids and derivatives(GO:0016855) racemase activity, acting on amino acids and derivatives(GO:0036361) amino-acid racemase activity(GO:0047661)
0.1 0.3 GO:0016971 flavin-linked sulfhydryl oxidase activity(GO:0016971) thiol oxidase activity(GO:0016972)
0.1 2.0 GO:0003688 DNA replication origin binding(GO:0003688)
0.1 0.7 GO:0052852 very-long-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052852) long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity(GO:0052853) medium-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052854)
0.1 1.2 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.1 0.6 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.1 0.8 GO:0016464 chloroplast protein-transporting ATPase activity(GO:0016464)
0.1 0.4 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.1 0.3 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.1 0.3 GO:0042781 3'-tRNA processing endoribonuclease activity(GO:0042781)
0.1 0.4 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.1 4.1 GO:0016279 lysine N-methyltransferase activity(GO:0016278) protein-lysine N-methyltransferase activity(GO:0016279)
0.1 0.6 GO:0017108 5'-flap endonuclease activity(GO:0017108)
0.1 1.7 GO:0003756 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.1 0.2 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.1 0.6 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.1 1.6 GO:0034061 DNA polymerase activity(GO:0034061)
0.1 4.2 GO:0019843 rRNA binding(GO:0019843)
0.1 0.4 GO:0005354 galactose transmembrane transporter activity(GO:0005354)
0.1 0.5 GO:0005254 voltage-gated chloride channel activity(GO:0005247) chloride channel activity(GO:0005254)
0.1 0.6 GO:0016744 transferase activity, transferring aldehyde or ketonic groups(GO:0016744)
0.1 0.8 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.1 1.9 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 0.7 GO:0061505 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.1 0.7 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.1 0.4 GO:0004849 uridine kinase activity(GO:0004849)
0.1 0.2 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.1 1.2 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.1 0.3 GO:0003987 acetate-CoA ligase activity(GO:0003987)
0.1 0.4 GO:0008878 glucose-1-phosphate adenylyltransferase activity(GO:0008878)
0.1 0.2 GO:0018271 biotin-[acetyl-CoA-carboxylase] ligase activity(GO:0004077) biotin-protein ligase activity(GO:0018271)
0.0 2.4 GO:0016866 intramolecular transferase activity(GO:0016866)
0.0 2.1 GO:0008171 O-methyltransferase activity(GO:0008171)
0.0 0.5 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.0 0.3 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.0 0.9 GO:0008146 sulfotransferase activity(GO:0008146)
0.0 0.4 GO:0051185 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.0 0.5 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.1 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.0 1.5 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 0.2 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.0 2.0 GO:0022884 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)
0.0 0.1 GO:0004826 phenylalanine-tRNA ligase activity(GO:0004826)
0.0 0.2 GO:0080042 ADP-glucose pyrophosphohydrolase activity(GO:0080042)
0.0 1.3 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.0 1.4 GO:0016597 amino acid binding(GO:0016597)
0.0 0.9 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.5 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.0 0.4 GO:0002161 aminoacyl-tRNA editing activity(GO:0002161)
0.0 1.1 GO:0031593 polyubiquitin binding(GO:0031593)
0.0 0.1 GO:0004829 threonine-tRNA ligase activity(GO:0004829)
0.0 1.5 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 0.0 GO:0015152 hexose phosphate transmembrane transporter activity(GO:0015119) glucose-6-phosphate transmembrane transporter activity(GO:0015152)
0.0 0.1 GO:0004824 lysine-tRNA ligase activity(GO:0004824)
0.0 0.7 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.0 0.2 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.0 0.5 GO:0061608 nuclear import signal receptor activity(GO:0061608)
0.0 7.6 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.2 GO:0015665 myo-inositol transmembrane transporter activity(GO:0005365) myo-inositol:proton symporter activity(GO:0005366) polyol transmembrane transporter activity(GO:0015166) alcohol transmembrane transporter activity(GO:0015665)
0.0 0.2 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.0 0.4 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.0 0.2 GO:0003785 actin monomer binding(GO:0003785)
0.0 4.2 GO:0008017 microtubule binding(GO:0008017)
0.0 0.1 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.0 0.7 GO:0008810 cellulase activity(GO:0008810)
0.0 0.3 GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127)
0.0 0.4 GO:0043138 3'-5' DNA helicase activity(GO:0043138)
0.0 0.3 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.0 0.1 GO:0048365 Rac GTPase binding(GO:0048365)
0.0 0.7 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.3 GO:0043175 RNA polymerase core enzyme binding(GO:0043175)
0.0 0.7 GO:0043022 ribosome binding(GO:0043022)
0.0 1.9 GO:0008757 S-adenosylmethionine-dependent methyltransferase activity(GO:0008757)
0.0 0.9 GO:0051536 iron-sulfur cluster binding(GO:0051536) metal cluster binding(GO:0051540)
0.0 0.2 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.0 0.2 GO:0015172 acidic amino acid transmembrane transporter activity(GO:0015172)
0.0 0.2 GO:0000210 NAD+ diphosphatase activity(GO:0000210)
0.0 0.4 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)
0.0 0.3 GO:0015631 tubulin binding(GO:0015631)
0.0 0.2 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.0 1.0 GO:0016410 N-acyltransferase activity(GO:0016410)
0.0 0.6 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.0 0.5 GO:0004713 protein tyrosine kinase activity(GO:0004713)
0.0 0.1 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.0 2.6 GO:0005516 calmodulin binding(GO:0005516)
0.0 0.3 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 1.4 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 3.5 GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981)
0.0 0.1 GO:0003746 translation elongation factor activity(GO:0003746)
0.0 0.1 GO:0000150 recombinase activity(GO:0000150)
0.0 0.1 GO:0015562 efflux transmembrane transporter activity(GO:0015562)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.4 11.4 PID CMYB PATHWAY C-MYB transcription factor network
0.3 1.0 PID IL12 2PATHWAY IL12-mediated signaling events
0.2 0.9 PID MYC REPRESS PATHWAY Validated targets of C-MYC transcriptional repression
0.2 0.6 PID BETA CATENIN NUC PATHWAY Regulation of nuclear beta catenin signaling and target gene transcription
0.1 0.5 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
0.1 0.7 PID AP1 PATHWAY AP-1 transcription factor network
0.1 0.3 PID INTEGRIN1 PATHWAY Beta1 integrin cell surface interactions
0.1 0.8 PID FANCONI PATHWAY Fanconi anemia pathway
0.1 0.4 PID TELOMERASE PATHWAY Regulation of Telomerase

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
2.7 16.1 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.3 1.5 REACTOME PHASE II CONJUGATION Genes involved in Phase II conjugation
0.2 1.5 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.2 0.9 REACTOME FANCONI ANEMIA PATHWAY Genes involved in Fanconi Anemia pathway
0.2 0.8 REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES Genes involved in Recruitment of mitotic centrosome proteins and complexes
0.2 4.6 REACTOME PEPTIDE CHAIN ELONGATION Genes involved in Peptide chain elongation
0.2 1.0 REACTOME MHC CLASS II ANTIGEN PRESENTATION Genes involved in MHC class II antigen presentation
0.1 0.6 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.1 0.6 REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS Genes involved in Homologous recombination repair of replication-independent double-strand breaks
0.1 0.5 REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES Genes involved in Antiviral mechanism by IFN-stimulated genes
0.1 0.6 REACTOME EXTENSION OF TELOMERES Genes involved in Extension of Telomeres
0.1 0.3 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.0 0.3 REACTOME SIGNALING BY PDGF Genes involved in Signaling by PDGF
0.0 0.2 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation
0.0 0.1 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease