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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G05790
Z-value: 0.66
Transcription factors associated with AT5G05790
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G05790
|
AT5G05790 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G05790 | arTal_v1_Chr5_-_1742161_1742186 | 0.20 | 3.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 3.19 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 3.18 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr1_-_4682309_4682382 Show fit | 3.04 |
AT1G13650.3
AT1G13650.4 AT1G13650.2 AT1G13650.1 |
hypothetical protein |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 2.89 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 2.85 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 2.84 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 2.82 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 2.80 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 2.76 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 2.62 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G05790
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 16.3 | GO:0015979 | photosynthesis(GO:0015979) |
| 1.0 | 16.1 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.2 | 14.1 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.5 | 9.8 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.3 | 5.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.4 | 4.3 | GO:0018026 | peptidyl-lysine monomethylation(GO:0018026) |
| 0.3 | 4.3 | GO:0019253 | carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253) |
| 0.1 | 4.0 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.7 | 3.9 | GO:1903428 | photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428) |
| 0.4 | 3.9 | GO:0010206 | photosystem II repair(GO:0010206) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 34.8 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 17.9 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.4 | 15.3 | GO:0010319 | stromule(GO:0010319) |
| 0.6 | 11.0 | GO:0009522 | photosystem I(GO:0009522) |
| 0.2 | 10.1 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.2 | 8.9 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.1 | 8.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 7.3 | GO:0009521 | photosystem(GO:0009521) |
| 0.3 | 6.5 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.0 | 5.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.7 | 16.2 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.5 | 15.7 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.5 | 13.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 7.6 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.8 | 4.5 | GO:0016851 | magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003) |
| 0.1 | 4.2 | GO:0019843 | rRNA binding(GO:0019843) |
| 0.0 | 4.2 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.1 | 4.1 | GO:0016279 | lysine N-methyltransferase activity(GO:0016278) protein-lysine N-methyltransferase activity(GO:0016279) |
| 0.0 | 3.5 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.6 | 3.0 | GO:0031956 | medium-chain fatty acid-CoA ligase activity(GO:0031956) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 11.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.3 | 1.0 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 0.9 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.8 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 0.6 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.5 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.4 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
| 0.1 | 0.3 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.7 | 16.1 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 4.6 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.3 | 1.5 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.2 | 1.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 1.0 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.2 | 0.9 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.2 | 0.8 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.1 | 0.6 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.6 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.1 | 0.6 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |