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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G05550
Z-value: 4.42
Transcription factors associated with AT5G05550
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G05550
|
AT5G05550 | sequence-specific DNA binding transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G05550 | arTal_v1_Chr5_-_1640960_1640960 | 0.52 | 4.2e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 19.48 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 15.87 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 15.50 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 15.44 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr2_+_10906460_10906460 Show fit | 14.33 |
AT2G25625.2
|
histone deacetylase-like protein |
|
| arTal_v1_Chr3_+_9208861_9208941 Show fit | 14.28 |
AT3G25290.1
AT3G25290.2 |
Auxin-responsive family protein |
|
| arTal_v1_Chr2_+_10906215_10906215 Show fit | 13.83 |
AT2G25625.1
|
histone deacetylase-like protein |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 13.44 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_-_15859911_15859911 Show fit | 13.43 |
AT5G39610.1
|
NAC domain containing protein 6 |
|
| arTal_v1_Chr1_-_30053936_30053936 Show fit | 13.35 |
AT1G79900.1
|
Mitochondrial substrate carrier family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G05550
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 96.3 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.3 | 55.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 1.1 | 51.9 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.2 | 51.4 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
| 1.2 | 48.1 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 1.1 | 44.0 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.9 | 38.6 | GO:0072665 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 2.2 | 38.2 | GO:0009697 | salicylic acid biosynthetic process(GO:0009697) |
| 0.2 | 37.3 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
| 0.2 | 36.9 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 130.2 | GO:0005739 | mitochondrion(GO:0005739) |
| 0.0 | 80.8 | GO:0005634 | nucleus(GO:0005634) |
| 0.0 | 75.6 | GO:0005829 | cytosol(GO:0005829) |
| 0.2 | 72.8 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 71.7 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.3 | 48.1 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.4 | 46.1 | GO:0018995 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.3 | 34.0 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 1.7 | 25.1 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.3 | 24.9 | GO:0005746 | mitochondrial respiratory chain(GO:0005746) respiratory chain(GO:0070469) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 92.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 85.0 | GO:0000975 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.6 | 79.2 | GO:0019900 | kinase binding(GO:0019900) |
| 0.5 | 69.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.5 | 61.5 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.4 | 50.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.4 | 47.6 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.2 | 36.3 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.5 | 36.0 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.5 | 34.7 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 9.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 2.0 | 5.9 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 1.8 | 5.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 1.6 | 4.9 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.8 | 3.3 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.3 | 2.0 | PID P73PATHWAY | p73 transcription factor network |
| 1.9 | 1.9 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.4 | 1.8 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.3 | 1.6 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.5 | 1.4 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 12.7 | REACTOME RESOLUTION OF AP SITES VIA THE MULTIPLE NUCLEOTIDE PATCH REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the multiple-nucleotide patch replacement pathway |
| 1.5 | 7.6 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.5 | 6.9 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 1.0 | 6.0 | REACTOME APOPTOSIS | Genes involved in Apoptosis |
| 0.2 | 5.6 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.8 | 4.6 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.8 | 4.5 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.2 | 4.4 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 1.3 | 3.8 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 1.2 | 3.6 | REACTOME TRANSPORT OF MATURE TRANSCRIPT TO CYTOPLASM | Genes involved in Transport of Mature Transcript to Cytoplasm |