ISMARA results: AT5G04340

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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT5G04340

Z-value: 0.06

Transcription factors associated with AT5G04340

Gene Symbol	Gene ID	Gene Info
AT5G04340 TAIR	AT5G04340	6

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
ZAT6	arTal_v1_Chr5_-_1217362_1217362	0.41	3.1e-02	Click!

Activity profile of AT5G04340 motif

Sorted Z-values of AT5G04340 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr1_+_22034423_22034423 Show fit	0.04	AT1G59870.1	PEN3 TAIR Show fit	ABC-2 and Plant PDR ABC-type transporter family protein
arTal_v1_Chr3_-_8734562_8734624 Show fit	0.04	AT3G24170.3 AT3G24170.1	GR1 TAIR Show fit	glutathione-disulfide reductase
arTal_v1_Chr3_-_8734362_8734362 Show fit	0.03	AT3G24170.2	GR1 TAIR Show fit	glutathione-disulfide reductase
arTal_v1_Chr5_+_17734706_17734708 Show fit	0.03	AT5G44070.1 AT5G44070.2	CAD1 TAIR Show fit	phytochelatin synthase 1 (PCS1)
arTal_v1_Chr5_-_9671015_9671015 Show fit	0.02	AT5G27380.1	GSH2 TAIR Show fit	glutathione synthetase 2
arTal_v1_Chr4_-_12107565_12107695 Show fit	0.02	AT4G23100.1 AT4G23100.3	GSH1 TAIR Show fit	glutamate-cysteine ligase
arTal_v1_Chr4_-_12107299_12107299 Show fit	0.02	AT4G23100.2	GSH1 TAIR Show fit	glutamate-cysteine ligase

Showing 1 to 7 of 7 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G04340

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0010792	DNA double-strand break processing involved in repair via single-strand annealing(GO:0010792) double-strand break repair via single-strand annealing(GO:0045002)
0.0	0.1	GO:0019184	glutathione biosynthetic process(GO:0006750) nonribosomal peptide biosynthetic process(GO:0019184)

Showing 1 to 2 of 2 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0070336	Y-form DNA binding(GO:0000403) flap-structured DNA binding(GO:0070336)

Showing 1 to 1 of 1 entries