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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G03790
Z-value: 1.44
Transcription factors associated with AT5G03790
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G03790
|
AT5G03790 | homeobox 51 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB51 | arTal_v1_Chr5_+_1004782_1004784 | -0.04 | 8.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 3.69 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 3.67 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 3.61 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 3.48 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 3.32 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 3.06 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 3.03 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 3.02 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 3.00 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr5_+_5983683_5983683 Show fit | 2.98 |
AT5G18080.1
|
SAUR-like auxin-responsive protein family |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G03790
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 14.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.2 | 13.5 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.4 | 11.0 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.2 | 10.7 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.2 | 9.1 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.5 | 9.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.5 | 8.5 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.5 | 8.5 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.3 | 8.5 | GO:0009913 | epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855) |
| 0.3 | 7.7 | GO:0006284 | base-excision repair(GO:0006284) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 98.1 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 48.8 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.2 | 37.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 22.2 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.4 | 18.5 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 14.7 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 13.1 | GO:0048046 | apoplast(GO:0048046) |
| 0.7 | 10.6 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.2 | 10.2 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 7.5 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 27.8 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.4 | 13.4 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 12.2 | GO:0043531 | ADP binding(GO:0043531) |
| 0.5 | 11.8 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.4 | 11.0 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 10.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.4 | 10.3 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.0 | 9.5 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.1 | 8.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 8.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.6 | 2.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.3 | 2.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.5 | 1.6 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.3 | 1.3 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.9 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.3 | 0.8 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.2 | 0.8 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.2 | 0.7 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.6 | PID E2F PATHWAY | E2F transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 5.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 1.1 | 3.4 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.5 | 1.6 | REACTOME SPRY REGULATION OF FGF SIGNALING | Genes involved in Spry regulation of FGF signaling |
| 0.5 | 1.6 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.3 | 1.5 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 1.5 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.4 | 1.3 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.4 | 1.1 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.3 | 1.0 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.2 | 1.0 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |