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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G03150
Z-value: 0.59
Transcription factors associated with AT5G03150
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G03150
|
AT5G03150 | C2H2-like zinc finger protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| JKD | arTal_v1_Chr5_+_745421_745421 | -0.22 | 2.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_175706_175706 Show fit | 1.01 |
AT1G01480.1
|
1-amino-cyclopropane-1-carboxylate synthase 2 |
|
| arTal_v1_Chr1_+_176141_176141 Show fit | 1.01 |
AT1G01480.2
|
1-amino-cyclopropane-1-carboxylate synthase 2 |
|
| arTal_v1_Chr3_+_5471735_5471735 Show fit | 0.83 |
AT3G16150.1
|
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
|
| arTal_v1_Chr3_-_19643276_19643282 Show fit | 0.82 |
AT3G52970.1
AT3G52970.2 |
cytochrome P450, family 76, subfamily G, polypeptide 1 |
|
| arTal_v1_Chr5_-_1817505_1817505 Show fit | 0.72 |
AT5G06043.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_30129649_30129649 Show fit | 0.71 |
AT1G80080.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr3_-_20142763_20142763 Show fit | 0.68 |
AT3G54400.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr5_-_15461459_15461459 Show fit | 0.67 |
AT5G38610.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr1_+_8720309_8720309 Show fit | 0.67 |
AT1G24600.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_18559326_18559326 Show fit | 0.65 |
AT3G50060.1
|
myb domain protein 77 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G03150
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.0 | GO:0042218 | 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218) |
| 0.0 | 1.5 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.2 | 1.2 | GO:0010929 | positive regulation of auxin mediated signaling pathway(GO:0010929) |
| 0.3 | 1.1 | GO:1901601 | lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601) |
| 0.3 | 1.0 | GO:0031115 | negative regulation of microtubule polymerization(GO:0031115) |
| 0.0 | 0.9 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.0 | 0.9 | GO:0010311 | lateral root formation(GO:0010311) |
| 0.0 | 0.9 | GO:0043086 | negative regulation of catalytic activity(GO:0043086) |
| 0.3 | 0.8 | GO:0016540 | protein autoprocessing(GO:0016540) |
| 0.1 | 0.8 | GO:0090548 | response to nitrate starvation(GO:0090548) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | GO:0034702 | ion channel complex(GO:0034702) cation channel complex(GO:0034703) |
| 0.1 | 0.6 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.0 | 0.5 | GO:0005769 | early endosome(GO:0005769) |
| 0.1 | 0.4 | GO:0005652 | nuclear lamina(GO:0005652) |
| 0.1 | 0.3 | GO:0035371 | microtubule plus-end(GO:0035371) |
| 0.1 | 0.3 | GO:0031515 | tRNA (m1A) methyltransferase complex(GO:0031515) |
| 0.1 | 0.3 | GO:0070505 | pollen coat(GO:0070505) |
| 0.0 | 0.3 | GO:0009360 | DNA polymerase III complex(GO:0009360) |
| 0.0 | 0.3 | GO:0016272 | prefoldin complex(GO:0016272) |
| 0.0 | 0.3 | GO:0005688 | U6 snRNP(GO:0005688) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.6 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.0 | 1.8 | GO:0003779 | actin binding(GO:0003779) |
| 0.3 | 1.5 | GO:0031957 | very long-chain fatty acid-CoA ligase activity(GO:0031957) |
| 0.0 | 1.2 | GO:0005179 | hormone activity(GO:0005179) |
| 0.0 | 1.1 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 1.1 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 1.0 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 0.9 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.1 | 0.9 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.3 | 0.8 | GO:0008798 | beta-aspartyl-peptidase activity(GO:0008798) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.0 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.0 | 0.0 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.2 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.0 | 0.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |