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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT5G03150

Z-value: 0.59

Transcription factors associated with AT5G03150

Gene Symbol Gene ID Gene Info
AT5G03150 C2H2-like zinc finger protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
JKDarTal_v1_Chr5_+_745421_745421-0.222.7e-01Click!

Activity profile of AT5G03150 motif

Sorted Z-values of AT5G03150 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_175706 1.01 AT1G01480.1
1-amino-cyclopropane-1-carboxylate synthase 2
Chr1_+_176141 1.01 AT1G01480.2
1-amino-cyclopropane-1-carboxylate synthase 2
Chr3_+_5471735 0.83 AT3G16150.1
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Chr3_-_19643276 0.82 AT3G52970.1
AT3G52970.2
cytochrome P450, family 76, subfamily G, polypeptide 1
Chr5_-_1817505 0.72 AT5G06043.1
hypothetical protein
Chr1_-_30129649 0.71 AT1G80080.1
Leucine-rich repeat (LRR) family protein
Chr3_-_20142763 0.68 AT3G54400.1
Eukaryotic aspartyl protease family protein
Chr5_-_15461459 0.67 AT5G38610.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr1_+_8720309 0.67 AT1G24600.1
hypothetical protein
Chr3_-_18559326 0.65 AT3G50060.1
myb domain protein 77
Chr1_+_5795879 0.65 AT1G16950.1
transmembrane protein
Chr1_-_1161982 0.63 AT1G04330.1
hypothetical protein
Chr3_+_7541384 0.60 AT3G21420.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr2_-_10127589 0.60 AT2G23790.1
calcium uniporter (DUF607)
Chr1_-_22317070 0.57 AT1G60590.1
Pectin lyase-like superfamily protein
Chr1_+_21652988 0.56 AT1G58340.1
MATE efflux family protein
Chr1_-_8967562 0.56 AT1G25530.1
Transmembrane amino acid transporter family protein
Chr2_-_14863412 0.55 AT2G35300.1
Late embryogenesis abundant protein, group 1 protein
Chr2_-_14322082 0.55 AT2G33850.1
E6-like protein
Chr4_-_17355891 0.55 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
PQ-loop repeat family protein / transmembrane family protein
Chr3_+_19184926 0.55 AT3G51720.1
WEB family protein (DUF827)
Chr4_+_4886962 0.54 AT4G08040.1
1-aminocyclopropane-1-carboxylate synthase 11
Chr4_-_18179183 0.54 AT4G39010.2
AT4G39010.1
glycosyl hydrolase 9B18
Chr4_+_17524461 0.53 AT4G37240.1
HTH-type transcriptional regulator
Chr5_-_4423095 0.52 AT5G13700.1
polyamine oxidase 1
Chr2_-_8533779 0.52 AT2G19800.1
myo-inositol oxygenase 2
Chr4_-_9583290 0.51 AT4G17030.1
expansin-like B1
Chr4_+_8913653 0.51 AT4G15620.1
Uncharacterized protein family (UPF0497)
Chr5_+_5594632 0.50 AT5G17020.1
AT5G17020.2
exportin 1A
Chr2_-_17161293 0.50 AT2G41170.2
AT2G41170.1
AT2G41170.3
F-box family protein
Chr3_-_20895634 0.50 AT3G56350.1
Iron/manganese superoxide dismutase family protein
Chr5_-_16135347 0.49 AT5G40340.2
AT5G40340.1
Tudor/PWWP/MBT superfamily protein
Chr2_+_12897054 0.48 AT2G30230.1
6,7-dimethyl-8-ribityllumazine synthase
Chr2_-_9767 0.48 AT2G01023.1
hypothetical protein
Chr5_+_18537239 0.47 AT5G45700.1
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr2_+_3618058 0.47 AT2G08986.1
hypothetical protein
Chr4_+_15828228 0.46 AT4G32810.1
AT4G32810.2
carotenoid cleavage dioxygenase 8
Chr3_-_18883033 0.46 AT3G50800.1
hypothetical protein
Chr2_-_9858778 0.45 AT2G23150.1
natural resistance-associated macrophage protein 3
Chr2_+_13580371 0.44 AT2G31940.1
oxidoreductase/transition metal ion-binding protein
Chr2_-_12785037 0.43 AT2G29980.2
fatty acid desaturase 3
Chr2_-_12785190 0.43 AT2G29980.1
fatty acid desaturase 3
Chr4_+_17579618 0.43 AT4G37390.1
Auxin-responsive GH3 family protein
Chr1_-_29492875 0.42 AT1G78390.1
nine-cis-epoxycarotenoid dioxygenase 9
Chr5_-_19328940 0.40 AT5G47700.2
AT5G47700.1
60S acidic ribosomal protein family
Chr4_+_1374160 0.40 AT4G03100.1
Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein
Chr1_+_29220349 0.40 AT1G77740.1
phosphatidylinositol-4-phosphate 5-kinase 2
Chr1_+_12261165 0.40 AT1G33800.1
glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
Chr3_-_19022647 0.39 AT3G51220.1
WEB family protein (DUF827)
Chr5_+_22090417 0.39 AT5G54400.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_+_29220538 0.39 AT1G77740.2
phosphatidylinositol-4-phosphate 5-kinase 2
Chr4_+_16357421 0.39 AT4G34160.1
CYCLIN D3;1
Chr2_+_1025 0.39 AT2G01008.1
maternal effect embryo arrest protein
Chr2_+_10072057 0.39 AT2G23690.1
HTH-type transcriptional regulator
Chr2_+_19393584 0.38 AT2G47240.3
AMP-dependent synthetase and ligase family protein
Chr4_-_8138392 0.38 AT4G14130.1
xyloglucan endotransglucosylase/hydrolase 15
Chr1_-_29647691 0.38 AT1G78860.1
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr2_+_19394106 0.38 AT2G47240.4
AMP-dependent synthetase and ligase family protein
Chr5_-_23678002 0.38 AT5G58580.1
TOXICOS EN LEVADURA 63
Chr2_+_15934244 0.38 AT2G38080.1
Laccase/Diphenol oxidase family protein
Chr5_-_7560190 0.37 AT5G22740.1
cellulose synthase-like A02
Chr1_-_25156389 0.37 AT1G67230.1
little nuclei1
Chr2_-_2259633 0.37 AT2G05910.1
LURP-one-like protein (DUF567)
Chr4_+_929869 0.37 AT4G02100.1
Heat shock protein DnaJ with tetratricopeptide repeat-containing protein
Chr4_-_12520898 0.37 AT4G24110.1
NADP-specific glutamate dehydrogenase
Chr5_-_3517035 0.37 AT5G11070.1
hypothetical protein
Chr1_-_28189765 0.36 AT1G75090.1
DNA glycosylase superfamily protein
Chr2_+_19392744 0.36 AT2G47240.2
AMP-dependent synthetase and ligase family protein
Chr1_-_7906969 0.36 AT1G22400.1
UDP-Glycosyltransferase superfamily protein
Chr1_-_1286619 0.36 AT1G04620.1
coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family
Chr2_+_17527167 0.36 AT2G41990.1
late embryogenesis abundant protein
Chr2_+_19392497 0.35 AT2G47240.1
AMP-dependent synthetase and ligase family protein
Chr1_+_10214681 0.35 AT1G29230.1
CBL-interacting protein kinase 18
Chr1_-_11605174 0.34 AT1G32200.2
AT1G32200.1
phospholipid/glycerol acyltransferase family protein
Chr3_+_8382672 0.34 AT3G23410.1
fatty alcohol oxidase 3
Chr3_+_6105908 0.34 AT3G17840.1
receptor-like kinase 902
Chr3_-_5777841 0.34 AT3G16920.1
chitinase-like protein
Chr3_-_9939305 0.34 AT3G26940.1
Protein kinase superfamily protein
Chr3_+_8383331 0.34 AT3G23410.2
fatty alcohol oxidase 3
Chr5_-_17994584 0.33 AT5G44610.3
AT5G44610.2
AT5G44610.1
microtubule-associated protein 18
Chr5_-_442187 0.33 AT5G02220.1
cyclin-dependent kinase inhibitor
Chr1_+_29292405 0.33 AT1G77890.5
DNA-directed RNA polymerase II protein
Chr1_-_21614169 0.33 AT1G58270.1
TRAF-like family protein
Chr5_+_7676938 0.33 AT5G22940.2
glucuronoxylan glucuronosyltransferase, putative
Chr1_-_958383 0.32 AT1G03800.1
ERF domain protein 10
Chr5_-_5253790 0.32 AT5G16080.1
carboxyesterase 17
Chr3_+_9480746 0.32 AT3G25900.1
AT3G25900.3
AT3G25900.2
Homocysteine S-methyltransferase family protein
Chr2_-_591689 0.32 AT2G02230.1
phloem protein 2-B1
Chr2_-_18933544 0.32 AT2G46030.5
AT2G46030.4
ubiquitin-conjugating enzyme 6
Chr4_+_10940414 0.32 AT4G20260.2
plasma-membrane associated cation-binding protein 1
Chr1_-_29572572 0.32 AT1G78610.1
mechanosensitive channel of small conductance-like 6
Chr4_+_10940662 0.32 AT4G20260.7
AT4G20260.9
AT4G20260.8
AT4G20260.10
AT4G20260.5
AT4G20260.6
AT4G20260.1
AT4G20260.4
AT4G20260.3
plasma-membrane associated cation-binding protein 1
Chr1_+_18218341 0.31 AT1G49245.1
Prefoldin chaperone subunit family protein
Chr4_+_14847583 0.31 AT4G30350.1
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr2_+_18007629 0.31 AT2G43340.1
hypothetical protein (DUF1685)
Chr3_+_3717894 0.31 AT3G11760.1
structural maintenance of chromosomes flexible hinge domain protein
Chr5_+_7676662 0.31 AT5G22940.1
glucuronoxylan glucuronosyltransferase, putative
Chr5_+_26854022 0.31 AT5G67300.1
myb domain protein r1
Chr3_-_19459203 0.31 AT3G52490.1
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr1_-_10505166 0.31 AT1G29980.2
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
Chr1_-_26663337 0.30 AT1G70710.1
glycosyl hydrolase 9B1
Chr5_+_26172009 0.30 AT5G65470.1
O-fucosyltransferase family protein
Chr2_-_18934044 0.30 AT2G46030.1
AT2G46030.2
AT2G46030.3
ubiquitin-conjugating enzyme 6
Chr4_+_16091535 0.30 AT4G33440.1
Pectin lyase-like superfamily protein
Chr4_-_8240324 0.30 AT4G14310.2
AT4G14310.1
Transducin/WD40 repeat-like superfamily protein
Chr3_+_10505711 0.30 AT3G28180.1
Cellulose-synthase-like C4
Chr1_+_29214220 0.30 AT1G77730.1
Pleckstrin homology (PH) domain superfamily protein
Chr1_+_29391630 0.30 AT1G78110.1
nucleolar GTP-binding protein
Chr2_+_12759973 0.29 AT2G29940.1
pleiotropic drug resistance 3
Chr1_+_29292075 0.29 AT1G77890.1
AT1G77890.4
AT1G77890.2
AT1G77890.3
DNA-directed RNA polymerase II protein
Chr1_+_6728747 0.29 AT1G19440.1
3-ketoacyl-CoA synthase 4
Chr5_-_26842104 0.29 AT5G67270.1
end binding protein 1C
Chr3_+_4995941 0.29 AT3G14850.1
TRICHOME BIREFRINGENCE-LIKE 41
Chr1_+_23481907 0.29 AT1G63300.1
Myosin heavy chain-related protein
Chr3_+_6605296 0.29 AT3G19100.1
Protein kinase superfamily protein
Chr1_+_4247218 0.29 AT1G12460.1
AT1G12460.2
Leucine-rich repeat protein kinase family protein
Chr3_-_824546 0.29 AT3G03460.1
mediator of RNA polymerase II transcription subunit-like protein
Chr4_-_15429113 0.29 AT4G31890.2
AT4G31890.1
AT4G31890.3
ARM repeat superfamily protein
Chr3_-_538126 0.28 AT3G02550.1
LOB domain-containing protein 41
Chr5_-_25108013 0.28 AT5G62550.1
microtubule-associated futsch-like protein
Chr1_-_22336994 0.28 AT1G60630.1
Leucine-rich repeat protein kinase family protein
Chr4_+_685670 0.28 AT4G01580.1
AP2/B3-like transcriptional factor family protein
Chr3_+_4995426 0.28 AT3G14850.2
TRICHOME BIREFRINGENCE-LIKE 41
Chr2_+_10391075 0.28 AT2G24440.1
selenium binding protein
Chr5_+_9422879 0.28 AT5G26790.1
transmembrane protein
Chr5_-_7047446 0.28 AT5G20820.1
SAUR-like auxin-responsive protein family
Chr1_+_23144385 0.28 AT1G62520.1
sulfated surface-like glycoprotein
Chr4_-_18370698 0.27 AT4G39510.1
cytochrome P450, family 96, subfamily A, polypeptide 12
Chr3_-_2771375 0.27 AT3G09070.1
LOW protein: UPF0503-like protein, putative (DUF740)
Chr2_-_17569669 0.27 AT2G42140.1
VQ motif-containing protein
Chr3_-_5778052 0.27 AT3G16920.2
chitinase-like protein
Chr5_+_16290386 0.27 AT5G40690.1
histone-lysine N-methyltransferase trithorax-like protein
Chr4_-_14439723 0.27 AT4G29310.1
AT4G29310.2
DUF1005 family protein (DUF1005)
Chr4_+_9257869 0.27 AT4G16390.1
pentatricopeptide (PPR) repeat-containing protein
Chr3_+_19996177 0.26 AT3G54000.1
AT3G54000.2
TIP41-like protein
Chr4_+_1032350 0.26 AT4G02330.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_+_21676388 0.26 AT1G58360.1
amino acid permease 1
Chr2_+_9379465 0.26 AT2G22055.1
RALF-like 15
Chr5_-_13364411 0.26 AT5G35110.1
hypothetical protein
Chr4_+_7042354 0.26 AT4G11660.1
winged-helix DNA-binding transcription factor family protein
Chr1_+_7032070 0.26 AT1G20310.1
syringolide-induced protein
Chr3_+_2983860 0.26 AT3G09730.3
AT3G09730.1
AT3G09730.2
POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein
Chr5_-_122507 0.25 AT5G01300.2
AT5G01300.1
AT5G01300.3
PEBP (phosphatidylethanolamine-binding protein) family protein
Chr5_+_9295341 0.25 AT5G26731.1
hypothetical protein
Chr1_-_8235019 0.25 AT1G23205.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr1_-_10506189 0.25 AT1G29980.1
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
Chr3_+_1795145 0.25 AT3G05980.1
hypothetical protein
Chr5_+_3550300 0.25 AT5G11160.1
AT5G11160.2
adenine phosphoribosyltransferase 5
Chr4_+_17739514 0.25 AT4G37750.1
Integrase-type DNA-binding superfamily protein
Chr5_-_24903131 0.25 AT5G61990.1
Pentatricopeptide repeat (PPR) superfamily protein
Chr4_+_17540490 0.25 AT4G37260.1
myb domain protein 73
Chr1_+_4868346 0.25 AT1G14250.1
GDA1/CD39 nucleoside phosphatase family protein
Chr5_-_5522258 0.25 AT5G16780.2
AT5G16780.3
AT5G16780.1
SART-1 family
Chr2_+_18490030 0.25 AT2G44830.3
Protein kinase superfamily protein
Chr2_-_821291 0.24 AT2G02835.1
nucleic acid/zinc ion-binding protein
Chr2_-_13784471 0.24 AT2G32460.2
AT2G32460.1
myb domain protein 101
Chr5_-_7250770 0.24 AT5G21940.1
hybrid signal transduction histidine kinase M-like protein
Chr2_+_18489875 0.24 AT2G44830.1
Protein kinase superfamily protein
Chr1_-_23595775 0.24 AT1G63640.2
AT1G63640.4
AT1G63640.5
AT1G63640.3
AT1G63640.1
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein
Chr4_-_9668356 0.24 AT4G17240.2
structural maintenance of chromosomes protein
Chr4_+_16694044 0.24 AT4G35070.1
AT4G35070.2
SBP (S-ribonuclease binding protein) family protein
Chr4_-_14094776 0.24 AT4G28530.2
AT4G28530.1
NAC domain containing protein 74
Chr1_-_6324378 0.23 AT1G18370.1
ATP binding microtubule motor family protein
Chr5_-_22547062 0.23 AT5G55670.1
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_+_4817997 0.23 AT5G14890.1
potassium transporter
Chr3_+_19996533 0.23 AT3G54000.3
TIP41-like protein
Chr1_-_1157786 0.23 AT1G04310.2
AT1G04310.1
ethylene response sensor 2
Chr4_+_16397995 0.23 AT4G34260.1
1,2-alpha-L-fucosidase
Chr1_+_28746833 0.23 AT1G76600.1
poly polymerase
Chr2_-_2244851 0.23 AT2G05850.1
serine carboxypeptidase-like 38
Chr3_-_19078955 0.23 AT3G51400.1
hypothetical protein (DUF241)
Chr1_-_1611815 0.23 AT1G05470.2
AT1G05470.1
DNAse I-like superfamily protein
Chr2_+_18489607 0.23 AT2G44830.2
Protein kinase superfamily protein
Chr3_+_18709613 0.23 AT3G50410.1
OBF binding protein 1
Chr4_-_6479165 0.23 AT4G10480.2
AT4G10480.1
Nascent polypeptide-associated complex (NAC), alpha subunit family protein
Chr5_+_15213593 0.23 AT5G38120.2
AT5G38120.1
AT5G38120.3
AT5G38120.4
AMP-dependent synthetase and ligase family protein
Chr1_+_8098392 0.23 AT1G22882.1
Galactose-binding protein
Chr3_-_7864895 0.23 AT3G22240.1
cysteine-rich/transmembrane domain PCC1-like protein
Chr4_+_10366044 0.23 AT4G18910.1
AT4G18910.2
NOD26-like intrinsic protein 1;2
Chr1_-_9337938 0.22 AT1G26930.1
Galactose oxidase/kelch repeat superfamily protein
Chr1_-_21266368 0.22 AT1G56720.2
AT1G56720.4
Protein kinase superfamily protein
Chr1_+_17766738 0.22 AT1G48100.1
Pectin lyase-like superfamily protein
Chr3_+_8987835 0.22 AT3G24630.2
AT3G24630.1
hypothetical protein
Chr3_-_6925175 0.22 AT3G19900.2
AT3G19900.1
hypothetical protein
Chr1_-_21265895 0.22 AT1G56720.1
Protein kinase superfamily protein
Chr4_+_17346805 0.22 AT4G36820.1
calcium uniporter (DUF607)
Chr1_-_21266084 0.22 AT1G56720.3
Protein kinase superfamily protein
Chr5_+_4724407 0.22 AT5G14650.1
AT5G14650.2
Pectin lyase-like superfamily protein
Chr2_+_18408579 0.22 AT2G44600.1
hypothetical protein
Chr4_-_11519805 0.22 AT4G21680.1
NITRATE TRANSPORTER 1.8
Chr4_-_9668507 0.22 AT4G17240.1
structural maintenance of chromosomes protein
Chr4_+_5792137 0.22 AT4G09030.1
arabinogalactan protein 10
Chr1_-_9337759 0.22 AT1G26930.2
Galactose oxidase/kelch repeat superfamily protein
Chr2_-_14584797 0.22 AT2G34640.1
plastid transcriptionally active 12
Chr3_+_20344785 0.22 AT3G54920.1
Pectin lyase-like superfamily protein
Chr1_-_20303928 0.22 AT1G54385.1
AT1G54385.2
ARM repeat superfamily protein
Chr1_+_5514262 0.21 AT1G16080.1
nuclear protein
Chr1_+_3351923 0.21 AT1G10220.1
AT1G10220.2
ZCF37
Chr5_-_8972125 0.21 AT5G25770.2
AT5G25770.1
AT5G25770.3
alpha/beta-Hydrolases superfamily protein
Chr2_-_13000825 0.21 AT2G30500.1
AT2G30500.2
Kinase interacting (KIP1-like) family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G03150

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.0 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.3 1.0 GO:0031115 negative regulation of microtubule polymerization(GO:0031115)
0.3 0.8 GO:0016540 protein autoprocessing(GO:0016540)
0.3 1.1 GO:1901601 lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601)
0.2 1.2 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.1 0.6 GO:0070509 calcium ion import(GO:0070509)
0.1 0.7 GO:0010376 stomatal complex formation(GO:0010376)
0.1 0.8 GO:0090548 response to nitrate starvation(GO:0090548)
0.1 0.7 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.1 0.3 GO:1900459 positive regulation of brassinosteroid mediated signaling pathway(GO:1900459)
0.1 0.4 GO:0015692 lead ion transport(GO:0015692)
0.1 0.3 GO:0033477 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.1 0.5 GO:0019310 inositol catabolic process(GO:0019310)
0.1 0.5 GO:0046825 ribosomal small subunit export from nucleus(GO:0000056) regulation of protein export from nucleus(GO:0046825)
0.1 0.3 GO:0080168 abscisic acid transport(GO:0080168)
0.1 0.4 GO:0097298 regulation of nucleus size(GO:0097298)
0.1 0.6 GO:0006567 threonine catabolic process(GO:0006567)
0.1 0.3 GO:0034389 lipid particle organization(GO:0034389)
0.1 0.4 GO:0046208 spermine catabolic process(GO:0046208)
0.1 0.3 GO:0042256 mature ribosome assembly(GO:0042256)
0.1 0.2 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
0.1 0.5 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 0.3 GO:0043092 L-amino acid import(GO:0043092) L-glutamate import(GO:0051938) L-alpha-amino acid transmembrane transport(GO:1902475)
0.1 0.5 GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning(GO:0060774)
0.1 0.5 GO:0043096 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.1 0.2 GO:0072698 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.1 0.2 GO:0033240 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.1 0.1 GO:0015717 triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436)
0.1 0.2 GO:0006557 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
0.1 0.7 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1 0.1 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.1 0.6 GO:0010047 fruit dehiscence(GO:0010047)
0.1 0.2 GO:2000029 regulation of proanthocyanidin biosynthetic process(GO:2000029)
0.0 0.1 GO:0071258 cellular response to gravity(GO:0071258)
0.0 0.2 GO:0009558 embryo sac cellularization(GO:0009558)
0.0 0.2 GO:0006768 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102)
0.0 1.5 GO:0010143 cutin biosynthetic process(GO:0010143)
0.0 0.8 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.0 0.2 GO:1990019 protein storage vacuole organization(GO:1990019)
0.0 0.3 GO:0040001 establishment of mitotic spindle orientation(GO:0000132) establishment of mitotic spindle localization(GO:0040001) establishment of spindle localization(GO:0051293) establishment of spindle orientation(GO:0051294) spindle localization(GO:0051653)
0.0 0.6 GO:1901072 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.0 0.2 GO:0010480 microsporocyte differentiation(GO:0010480)
0.0 0.3 GO:0090356 negative regulation of auxin metabolic process(GO:0090356)
0.0 0.2 GO:0033386 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.0 0.4 GO:1903426 regulation of reactive oxygen species biosynthetic process(GO:1903426)
0.0 0.1 GO:0019343 cysteine biosynthetic process via cystathionine(GO:0019343)
0.0 0.1 GO:0048838 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438)
0.0 0.1 GO:0000256 allantoin catabolic process(GO:0000256)
0.0 0.9 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.0 0.2 GO:0080187 floral organ senescence(GO:0080187)
0.0 0.1 GO:0010213 non-photoreactive DNA repair(GO:0010213)
0.0 0.1 GO:0015965 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.0 0.3 GO:0033619 membrane protein proteolysis(GO:0033619)
0.0 0.2 GO:0071731 response to nitric oxide(GO:0071731)
0.0 0.1 GO:0090603 sieve element differentiation(GO:0090603)
0.0 0.2 GO:0046835 carbohydrate phosphorylation(GO:0046835)
0.0 0.1 GO:2000045 guard cell fate commitment(GO:0010377) regulation of G1/S transition of mitotic cell cycle(GO:2000045) regulation of genetic imprinting(GO:2000653)
0.0 0.4 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.0 0.2 GO:0080117 secondary growth(GO:0080117)
0.0 0.6 GO:0010187 negative regulation of seed germination(GO:0010187)
0.0 0.1 GO:0045723 positive regulation of fatty acid biosynthetic process(GO:0045723)
0.0 0.4 GO:0030488 tRNA methylation(GO:0030488)
0.0 0.2 GO:0009635 response to herbicide(GO:0009635)
0.0 0.6 GO:0009904 chloroplast accumulation movement(GO:0009904)
0.0 0.1 GO:0060145 viral gene silencing in virus induced gene silencing(GO:0060145)
0.0 0.5 GO:0043449 ethylene metabolic process(GO:0009692) ethylene biosynthetic process(GO:0009693) cellular alkene metabolic process(GO:0043449) alkene biosynthetic process(GO:0043450) olefin metabolic process(GO:1900673) olefin biosynthetic process(GO:1900674)
0.0 0.1 GO:0007019 microtubule depolymerization(GO:0007019)
0.0 0.5 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.7 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.0 0.9 GO:0010311 lateral root formation(GO:0010311)
0.0 0.1 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.0 0.2 GO:0080086 stamen filament development(GO:0080086)
0.0 0.7 GO:0055072 iron ion homeostasis(GO:0055072)
0.0 0.1 GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly(GO:0033615)
0.0 0.2 GO:0046033 AMP metabolic process(GO:0046033)
0.0 0.4 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 0.4 GO:0045492 xylan biosynthetic process(GO:0045492)
0.0 0.4 GO:0008356 asymmetric cell division(GO:0008356)
0.0 0.1 GO:0031542 positive regulation of anthocyanin biosynthetic process(GO:0031542)
0.0 0.1 GO:0048830 adventitious root development(GO:0048830)
0.0 0.1 GO:0006000 fructose metabolic process(GO:0006000)
0.0 0.2 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 0.1 GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.0 0.1 GO:0051775 response to redox state(GO:0051775)
0.0 0.2 GO:0010105 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 0.1 GO:0010052 guard cell differentiation(GO:0010052)
0.0 0.3 GO:0031425 chloroplast RNA processing(GO:0031425)
0.0 0.1 GO:0070898 RNA polymerase III transcriptional preinitiation complex assembly(GO:0070898)
0.0 0.2 GO:0046417 chorismate metabolic process(GO:0046417)
0.0 0.5 GO:0000038 very long-chain fatty acid metabolic process(GO:0000038)
0.0 0.1 GO:0009799 specification of symmetry(GO:0009799)
0.0 0.4 GO:0099518 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.0 0.0 GO:1900364 negative regulation of mRNA 3'-end processing(GO:0031441) negative regulation of mRNA processing(GO:0050686) negative regulation of mRNA polyadenylation(GO:1900364) negative regulation of mRNA metabolic process(GO:1903312)
0.0 0.1 GO:0045840 positive regulation of mitotic nuclear division(GO:0045840) positive regulation of mitotic metaphase/anaphase transition(GO:0045842) positive regulation of mitotic sister chromatid separation(GO:1901970) positive regulation of metaphase/anaphase transition of cell cycle(GO:1902101)
0.0 0.0 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.0 0.1 GO:0080009 mRNA methylation(GO:0080009)
0.0 0.1 GO:0051570 regulation of histone H3-K9 methylation(GO:0051570)
0.0 0.9 GO:0043086 negative regulation of catalytic activity(GO:0043086)
0.0 0.2 GO:0007052 mitotic spindle organization(GO:0007052)
0.0 0.2 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.2 GO:0006744 ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744)
0.0 0.1 GO:0005513 detection of calcium ion(GO:0005513)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0034702 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.1 0.4 GO:0005652 nuclear lamina(GO:0005652)
0.1 0.3 GO:0035371 microtubule plus-end(GO:0035371)
0.1 0.3 GO:0031515 tRNA (m1A) methyltransferase complex(GO:0031515)
0.1 0.3 GO:0070505 pollen coat(GO:0070505)
0.1 0.6 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.3 GO:0009360 DNA polymerase III complex(GO:0009360)
0.0 0.2 GO:0005854 nascent polypeptide-associated complex(GO:0005854)
0.0 0.3 GO:0016272 prefoldin complex(GO:0016272)
0.0 0.5 GO:0005769 early endosome(GO:0005769)
0.0 0.2 GO:0098553 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.0 0.3 GO:0005688 U6 snRNP(GO:0005688)
0.0 0.3 GO:0045298 tubulin complex(GO:0045298)
0.0 0.2 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.0 0.1 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.0 0.1 GO:0016363 nuclear matrix(GO:0016363)
0.0 0.1 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.0 0.2 GO:0000427 plastid-encoded plastid RNA polymerase complex(GO:0000427)
0.0 0.1 GO:0005663 DNA replication factor C complex(GO:0005663)
0.0 0.1 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.3 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.0 0.3 GO:0046540 U4/U6 x U5 tri-snRNP complex(GO:0046540)
0.0 0.1 GO:0030870 Mre11 complex(GO:0030870)
0.0 0.1 GO:0000126 transcription factor TFIIIB complex(GO:0000126)
0.0 0.1 GO:0044545 NSL complex(GO:0044545)
0.0 0.2 GO:0005753 mitochondrial proton-transporting ATP synthase complex(GO:0005753)
0.0 0.3 GO:0016324 apical plasma membrane(GO:0016324)
0.0 0.0 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.0 0.2 GO:0033179 proton-transporting V-type ATPase, V0 domain(GO:0033179)
0.0 0.2 GO:0031965 nuclear membrane(GO:0031965)
0.0 0.2 GO:0016459 myosin complex(GO:0016459)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.5 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.3 0.8 GO:0008798 beta-aspartyl-peptidase activity(GO:0008798)
0.2 2.6 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.2 0.7 GO:0043325 phosphatidylinositol-3,4-bisphosphate binding(GO:0043325)
0.2 0.5 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
0.1 0.7 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.1 0.4 GO:0050403 trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502)
0.1 0.4 GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor(GO:0052592)
0.1 0.3 GO:0071614 linoleic acid epoxygenase activity(GO:0071614)
0.1 0.6 GO:0008732 threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732)
0.1 0.3 GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.1 0.9 GO:0010436 carotenoid dioxygenase activity(GO:0010436)
0.1 0.5 GO:0050113 inositol oxygenase activity(GO:0050113)
0.1 0.3 GO:0051010 microtubule plus-end binding(GO:0051010)
0.1 0.3 GO:0022858 L-alanine transmembrane transporter activity(GO:0015180) alanine transmembrane transporter activity(GO:0022858)
0.1 0.3 GO:0016429 tRNA (adenine-N1-)-methyltransferase activity(GO:0016429)
0.1 0.2 GO:0004560 alpha-L-fucosidase activity(GO:0004560)
0.1 0.5 GO:0005049 nuclear export signal receptor activity(GO:0005049)
0.1 0.5 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.1 0.2 GO:0080132 fatty acid alpha-hydroxylase activity(GO:0080132)
0.1 0.2 GO:0004106 chorismate mutase activity(GO:0004106)
0.1 0.9 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
0.1 0.4 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.1 0.2 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.1 0.2 GO:0050412 cinnamate beta-D-glucosyltransferase activity(GO:0050412)
0.1 0.8 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.1 0.2 GO:0015292 uniporter activity(GO:0015292)
0.0 0.2 GO:1990269 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.0 0.2 GO:0038199 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.0 0.5 GO:0004784 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.0 0.5 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.0 1.1 GO:0008810 cellulase activity(GO:0008810)
0.0 0.4 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.0 0.1 GO:0015119 hexose phosphate transmembrane transporter activity(GO:0015119) glucose-6-phosphate transmembrane transporter activity(GO:0015152)
0.0 0.7 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.0 1.2 GO:0005179 hormone activity(GO:0005179)
0.0 0.8 GO:0004568 chitinase activity(GO:0004568)
0.0 0.2 GO:0046030 inositol trisphosphate phosphatase activity(GO:0046030)
0.0 0.2 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.0 0.1 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.0 0.1 GO:0004335 galactokinase activity(GO:0004335)
0.0 0.4 GO:0003689 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.0 0.2 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.0 0.1 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
0.0 0.1 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.0 0.1 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.0 0.1 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.0 0.2 GO:0008381 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.0 0.1 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.0 0.7 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.0 0.2 GO:0060229 phospholipase activator activity(GO:0016004) lipase activator activity(GO:0060229)
0.0 0.2 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.4 GO:0008175 tRNA methyltransferase activity(GO:0008175)
0.0 0.2 GO:0004715 non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.0 0.3 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.0 0.2 GO:0017108 5'-flap endonuclease activity(GO:0017108)
0.0 0.1 GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity(GO:0004473)
0.0 0.1 GO:0000150 recombinase activity(GO:0000150)
0.0 0.2 GO:0004161 dimethylallyltranstransferase activity(GO:0004161)
0.0 0.1 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)
0.0 0.2 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.0 0.1 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.0 0.1 GO:0032036 myosin tail binding(GO:0032029) myosin heavy chain binding(GO:0032036) myosin XI tail binding(GO:0080115)
0.0 0.1 GO:0003680 AT DNA binding(GO:0003680)
0.0 0.1 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.0 0.1 GO:0001032 polymerase III regulatory region sequence-specific DNA binding(GO:0000992) RNA polymerase III type 3 promoter sequence-specific DNA binding(GO:0001006) RNA polymerase III regulatory region DNA binding(GO:0001016) RNA polymerase III type 3 promoter DNA binding(GO:0001032)
0.0 0.1 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.0 0.3 GO:1901981 phosphatidylinositol phosphate binding(GO:1901981)
0.0 0.1 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.0 0.1 GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.0 0.8 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.0 0.2 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 0.7 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.2 GO:0031420 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 0.0 GO:0019781 NEDD8 activating enzyme activity(GO:0019781)
0.0 1.1 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.0 GO:0017022 myosin binding(GO:0017022)
0.0 0.1 GO:0010285 L,L-diaminopimelate aminotransferase activity(GO:0010285)
0.0 1.0 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.2 GO:0004017 adenylate kinase activity(GO:0004017)
0.0 0.1 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
0.0 0.3 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.1 GO:0008705 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.0 0.1 GO:0070182 DNA polymerase binding(GO:0070182)
0.0 0.2 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 0.2 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.0 1.8 GO:0003779 actin binding(GO:0003779)
0.0 0.1 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.0 0.4 GO:0016881 acid-amino acid ligase activity(GO:0016881)
0.0 0.1 GO:0008083 growth factor activity(GO:0008083)
0.0 0.1 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.3 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.1 GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891)
0.0 0.6 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.0 0.2 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 PID IL12 2PATHWAY IL12-mediated signaling events
0.0 0.0 PID DELTA NP63 PATHWAY Validated transcriptional targets of deltaNp63 isoforms
0.0 0.0 PID EPHA2 FWD PATHWAY EPHA2 forward signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 REACTOME MHC CLASS II ANTIGEN PRESENTATION Genes involved in MHC class II antigen presentation
0.1 0.2 REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
0.0 0.1 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)