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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G02460
Z-value: 1.00
Transcription factors associated with AT5G02460
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G02460
|
AT5G02460 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G02460 | arTal_v1_Chr5_-_541316_541316 | 0.80 | 3.8e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 3.87 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 3.76 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 3.76 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_20385380_20385380 Show fit | 3.53 |
AT1G54570.1
|
Esterase/lipase/thioesterase family protein |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 3.30 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr5_+_3358787_3358787 Show fit | 3.14 |
AT5G10625.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr1_+_27538190_27538190 Show fit | 3.13 |
AT1G73220.1
|
organic cation/carnitine transporter1 |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 3.12 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 3.09 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr3_+_22216540_22216540 Show fit | 3.05 |
AT3G60140.2
AT3G60140.1 |
Glycosyl hydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G02460
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 40.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 22.5 | GO:0044257 | cellular protein catabolic process(GO:0044257) |
| 0.3 | 14.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.2 | 12.9 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.1 | 12.8 | GO:0007568 | aging(GO:0007568) |
| 0.1 | 11.6 | GO:0016311 | dephosphorylation(GO:0016311) |
| 0.1 | 10.2 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.2 | 8.5 | GO:0006749 | glutathione metabolic process(GO:0006749) |
| 0.5 | 7.8 | GO:0009697 | salicylic acid biosynthetic process(GO:0009697) |
| 0.1 | 7.5 | GO:0009738 | abscisic acid-activated signaling pathway(GO:0009738) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 28.0 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.0 | 9.0 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.1 | 8.9 | GO:0033646 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.4 | 7.9 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.3 | 7.9 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.1 | 7.9 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 7.8 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 7.8 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.2 | 7.7 | GO:0016592 | mediator complex(GO:0016592) |
| 0.1 | 6.1 | GO:0010008 | endosome membrane(GO:0010008) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 26.8 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.2 | 24.5 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 16.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 14.2 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 12.8 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
| 0.1 | 12.3 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 11.3 | GO:0003779 | actin binding(GO:0003779) |
| 0.7 | 11.1 | GO:0003978 | UDP-glucose 4-epimerase activity(GO:0003978) |
| 0.2 | 11.0 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.2 | 10.4 | GO:0004364 | glutathione transferase activity(GO:0004364) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.8 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 2.5 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.5 | 2.4 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.2 | 1.1 | PID P73PATHWAY | p73 transcription factor network |
| 0.1 | 1.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 0.9 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.9 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.3 | 0.8 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.3 | 0.8 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.2 | 0.8 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.2 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 4.1 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.7 | 2.6 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.6 | 2.4 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.3 | 2.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 1.5 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 0.2 | 1.4 | REACTOME CIRCADIAN CLOCK | Genes involved in Circadian Clock |
| 0.2 | 1.4 | REACTOME RESOLUTION OF AP SITES VIA THE MULTIPLE NUCLEOTIDE PATCH REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the multiple-nucleotide patch replacement pathway |
| 0.4 | 1.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.3 | 1.0 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |