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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G02320
Z-value: 1.38
Transcription factors associated with AT5G02320
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G02320
|
AT5G02320 | myb domain protein 3r-5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB3R-5 | arTal_v1_Chr5_-_486434_486473 | -0.80 | 2.5e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 7.26 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 6.66 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr1_+_10375754_10375754 Show fit | 6.50 |
AT1G29670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 6.49 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
|
| arTal_v1_Chr1_+_10375599_10375599 Show fit | 6.44 |
AT1G29670.2
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_+_2199151_2199151 Show fit | 5.89 |
AT2G05790.1
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr3_+_23345754_23345754 Show fit | 5.72 |
AT3G63200.1
|
PATATIN-like protein 9 |
|
| arTal_v1_Chr2_-_9062093_9062093 Show fit | 5.69 |
AT2G21140.1
|
proline-rich protein 2 |
|
| arTal_v1_Chr1_-_598657_598657 Show fit | 5.68 |
AT1G02730.1
|
cellulose synthase-like D5 |
|
| arTal_v1_Chr1_+_3008910_3008910 Show fit | 5.45 |
AT1G09310.1
|
plant/protein (Protein of unknown function, DUF538) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G02320
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 19.8 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.6 | 14.7 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.2 | 14.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 14.0 | GO:0006412 | translation(GO:0006412) |
| 0.7 | 13.1 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.5 | 12.6 | GO:0010103 | stomatal complex morphogenesis(GO:0010103) |
| 0.4 | 11.4 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.5 | 11.1 | GO:0042044 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.4 | 10.0 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.1 | 8.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 52.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 38.2 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 20.9 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 18.2 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 18.0 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 14.2 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 11.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 11.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 1.4 | 10.8 | GO:0009533 | chloroplast stromal thylakoid(GO:0009533) |
| 0.2 | 10.2 | GO:0010319 | stromule(GO:0010319) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 21.1 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.7 | 14.9 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.6 | 14.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.4 | 14.2 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.4 | 14.1 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 13.7 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.6 | 13.3 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 12.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 10.6 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.8 | 10.0 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.9 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 2.0 | PID ATR PATHWAY | ATR signaling pathway |
| 0.6 | 1.7 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 1.0 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 0.6 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.1 | 0.6 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.1 | 0.1 | PID REELIN PATHWAY | Reelin signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.0 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.2 | 1.4 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.2 | 1.0 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.2 | 0.6 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.1 | 0.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |