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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G01380
Z-value: 0.74
Transcription factors associated with AT5G01380
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G01380
|
AT5G01380 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G01380 | arTal_v1_Chr5_-_157601_157601 | 0.59 | 8.7e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 2.88 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 2.77 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 2.77 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 2.64 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr5_-_15859911_15859911 Show fit | 2.46 |
AT5G39610.1
|
NAC domain containing protein 6 |
|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 2.41 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr5_+_3239617_3239617 Show fit | 2.32 |
AT5G10300.2
|
methyl esterase 5 |
|
| arTal_v1_Chr5_+_3239455_3239455 Show fit | 2.28 |
AT5G10300.1
|
methyl esterase 5 |
|
| arTal_v1_Chr1_+_26122080_26122080 Show fit | 2.23 |
AT1G69490.1
|
NAC-like, activated by AP3/PI |
|
| arTal_v1_Chr2_-_14146471_14146555 Show fit | 2.22 |
AT2G33380.2
AT2G33380.1 |
Caleosin-related family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G01380
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 10.4 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.0 | 8.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 6.2 | GO:0009611 | response to wounding(GO:0009611) |
| 1.0 | 5.2 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 1.1 | 4.6 | GO:0016139 | glycoside catabolic process(GO:0016139) |
| 0.0 | 4.4 | GO:0071365 | cellular response to auxin stimulus(GO:0071365) |
| 0.3 | 3.5 | GO:0000304 | response to singlet oxygen(GO:0000304) |
| 0.0 | 2.9 | GO:0009753 | response to jasmonic acid(GO:0009753) |
| 0.2 | 2.7 | GO:0019375 | galactolipid biosynthetic process(GO:0019375) |
| 0.9 | 2.6 | GO:0002215 | defense response to nematode(GO:0002215) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.5 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 2.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 2.0 | GO:0005881 | cytoplasmic microtubule(GO:0005881) |
| 0.1 | 2.0 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
| 0.1 | 1.8 | GO:0031231 | integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231) |
| 0.0 | 1.6 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 1.5 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.1 | 1.3 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
| 0.0 | 1.3 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 1.2 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.9 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.0 | 6.3 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.0 | 6.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 1.1 | 4.6 | GO:0046593 | mandelonitrile lyase activity(GO:0046593) |
| 0.0 | 3.5 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.0 | 2.9 | GO:0008236 | serine-type peptidase activity(GO:0008236) serine hydrolase activity(GO:0017171) |
| 0.1 | 2.8 | GO:0080030 | methyl indole-3-acetate esterase activity(GO:0080030) |
| 0.1 | 2.8 | GO:0015035 | protein disulfide oxidoreductase activity(GO:0015035) |
| 0.0 | 2.8 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.1 | 2.6 | GO:0042973 | glucan endo-1,3-beta-D-glucosidase activity(GO:0042973) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.9 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.6 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.2 | 0.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.4 | ST G ALPHA I PATHWAY | G alpha i Pathway |
| 0.0 | 0.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.1 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.3 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.9 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.1 | 0.6 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.6 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.2 | 0.5 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |