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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G38170
Z-value: 3.26
Transcription factors associated with AT4G38170
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G38170
|
AT4G38170 | FAR1-related sequence 9 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| FRS9 | arTal_v1_Chr4_+_17904532_17904532 | -0.88 | 1.1e-09 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 18.16 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 16.62 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 16.46 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 16.33 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 16.02 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 14.88 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 14.47 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 13.26 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 13.22 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 13.03 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G38170
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 5.0 | 65.4 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.8 | 64.6 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.7 | 39.0 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 2.7 | 35.2 | GO:0032544 | plastid translation(GO:0032544) |
| 1.8 | 32.5 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.5 | 28.5 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 1.3 | 25.4 | GO:2000033 | regulation of seed dormancy process(GO:2000033) |
| 0.3 | 23.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 1.5 | 23.0 | GO:0006833 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.3 | 21.4 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 147.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 114.1 | GO:0009579 | thylakoid(GO:0009579) |
| 0.6 | 95.1 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 2.2 | 93.2 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 84.3 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.3 | 58.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.4 | 49.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 3.9 | 31.5 | GO:0009533 | chloroplast stromal thylakoid(GO:0009533) |
| 0.1 | 24.5 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 1.0 | 23.2 | GO:0016324 | apical plasma membrane(GO:0016324) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.2 | 69.0 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 45.3 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 1.7 | 43.4 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 31.9 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 29.8 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.6 | 27.3 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
| 0.7 | 27.0 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 2.7 | 26.9 | GO:0008379 | thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920) |
| 0.4 | 23.4 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 1.1 | 22.0 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 7.6 | 61.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 3.1 | 12.2 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.9 | 6.1 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.7 | 3.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.6 | 3.2 | PID ATM PATHWAY | ATM pathway |
| 0.8 | 3.0 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.9 | 2.7 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.6 | 1.8 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.1 | 1.2 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.9 | PID E2F PATHWAY | E2F transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 10.9 | 65.4 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 2.1 | 8.2 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 1.0 | 7.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 6.8 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 1.9 | 5.7 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 1.0 | 4.0 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.8 | 3.2 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.6 | 3.0 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 2.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 1.3 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |