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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G37260
Z-value: 1.20
Transcription factors associated with AT4G37260
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G37260
|
AT4G37260 | myb domain protein 73 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB73 | arTal_v1_Chr4_+_17540490_17540490 | 0.21 | 2.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_10391298_10391298 Show fit | 2.13 |
AT4G18970.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_-_10390991_10390991 Show fit | 2.12 |
AT4G18970.2
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_-_846792_846814 Show fit | 2.06 |
AT4G01950.1
AT4G01950.2 |
glycerol-3-phosphate acyltransferase 3 |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 1.94 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr3_+_19417372_19417401 Show fit | 1.92 |
AT3G52370.2
AT3G52370.1 |
FASCICLIN-like arabinogalactan protein 15 precursor |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 1.86 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 1.80 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr2_-_15014147_15014284 Show fit | 1.77 |
AT2G35710.3
AT2G35710.4 AT2G35710.1 |
Nucleotide-diphospho-sugar transferases superfamily protein |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 1.76 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 1.68 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G37260
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.5 | 10.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 8.0 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
| 0.2 | 5.1 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.2 | 4.2 | GO:0046341 | CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341) |
| 0.4 | 3.5 | GO:0016103 | diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487) |
| 0.0 | 3.5 | GO:0043086 | negative regulation of catalytic activity(GO:0043086) |
| 0.4 | 3.2 | GO:0080165 | callose deposition in phloem sieve plate(GO:0080165) |
| 0.1 | 3.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.9 | 2.7 | GO:0015840 | urea transport(GO:0015840) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 72.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 19.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 6.2 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 4.2 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.2 | 2.4 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 2.3 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 2.2 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.1 | 2.1 | GO:0090404 | growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404) |
| 0.0 | 2.1 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 1.4 | GO:0015629 | actin cytoskeleton(GO:0015629) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 9.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 7.5 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.3 | 7.4 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.3 | 6.5 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.3 | 4.7 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.3 | 4.2 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.5 | 3.7 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.0 | 3.6 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.4 | 3.5 | GO:0045543 | gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634) |
| 0.2 | 3.4 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.5 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 1.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 0.8 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.2 | 0.6 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.3 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.0 | 0.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.1 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.1 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.8 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.3 | 1.2 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.1 | 1.2 | REACTOME RNA POL II TRANSCRIPTION | Genes involved in RNA Polymerase II Transcription |
| 0.2 | 0.8 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.1 | 0.4 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.1 | 0.4 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.1 | 0.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.4 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.1 | 0.3 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.0 | 0.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |