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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G36920
Z-value: 1.06
Transcription factors associated with AT4G36920
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G36920
|
AT4G36920 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AP2 | arTal_v1_Chr4_+_17400610_17400724 | -0.81 | 2.2e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_26141726_26141836 Show fit | 6.23 |
AT1G69530.2
AT1G69530.1 AT1G69530.3 AT1G69530.5 AT1G69530.4 |
expansin A1 |
|
| arTal_v1_Chr5_-_18026077_18026077 Show fit | 6.00 |
AT5G44680.1
|
DNA glycosylase superfamily protein |
|
| arTal_v1_Chr3_-_4008018_4008018 Show fit | 5.81 |
AT3G12610.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr4_+_12660687_12660687 Show fit | 5.53 |
AT4G24510.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr3_-_2130451_2130451 Show fit | 5.06 |
AT3G06750.1
|
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr2_-_9428170_9428170 Show fit | 5.01 |
AT2G22170.1
|
Lipase/lipooxygenase, PLAT/LH2 family protein |
|
| arTal_v1_Chr5_+_4974671_4974671 Show fit | 4.50 |
AT5G15310.2
AT5G15310.4 AT5G15310.3 AT5G15310.1 |
myb domain protein 16 |
|
| arTal_v1_Chr1_+_418726_418767 Show fit | 4.12 |
AT1G02205.4
AT1G02205.3 AT1G02205.5 AT1G02205.1 |
Fatty acid hydroxylase superfamily |
|
| arTal_v1_Chr5_-_4299264_4299264 Show fit | 3.90 |
AT5G13400.1
|
Major facilitator superfamily protein |
|
| arTal_v1_Chr5_-_2185972_2185972 Show fit | 3.85 |
AT5G07030.1
|
Eukaryotic aspartyl protease family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G36920
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 7.3 | GO:0043447 | alkane biosynthetic process(GO:0043447) |
| 0.3 | 6.2 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 6.0 | GO:0006284 | base-excision repair(GO:0006284) |
| 1.0 | 5.8 | GO:0009650 | UV protection(GO:0009650) |
| 0.3 | 5.5 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.3 | 5.1 | GO:0009641 | shade avoidance(GO:0009641) |
| 1.5 | 4.5 | GO:0035017 | cuticle pattern formation(GO:0035017) |
| 0.0 | 4.4 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 4.2 | GO:0010103 | stomatal complex morphogenesis(GO:0010103) |
| 0.1 | 4.2 | GO:0010166 | wax metabolic process(GO:0010166) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.3 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.0 | 6.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 4.5 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 3.9 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.5 | 2.6 | GO:0009897 | external side of plasma membrane(GO:0009897) |
| 0.1 | 1.9 | GO:0009986 | cell surface(GO:0009986) |
| 0.5 | 1.6 | GO:0009925 | basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178) |
| 0.4 | 1.5 | GO:0010330 | cellulose synthase complex(GO:0010330) |
| 0.1 | 1.5 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.0 | 1.4 | GO:0000790 | nuclear chromatin(GO:0000790) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 12.3 | GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups(GO:0016747) |
| 0.0 | 8.3 | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
| 2.4 | 7.3 | GO:0009924 | octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465) |
| 0.5 | 6.0 | GO:0003905 | alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733) |
| 0.6 | 5.0 | GO:0004096 | catalase activity(GO:0004096) |
| 0.1 | 4.2 | GO:0080044 | quercetin 7-O-glucosyltransferase activity(GO:0080044) |
| 0.1 | 3.9 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.1 | 3.5 | GO:0043621 | protein self-association(GO:0043621) |
| 0.0 | 2.6 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.4 | 2.2 | GO:0045544 | gibberellin 20-oxidase activity(GO:0045544) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.2 | 8.9 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.9 | PID E2F PATHWAY | E2F transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 7.3 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.2 | 1.6 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.1 | 0.9 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |