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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G36920

Z-value: 1.06

Transcription factors associated with AT4G36920

Gene Symbol Gene ID Gene Info
AT4G36920 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AP2arTal_v1_Chr4_+_17400610_17400724-0.812.2e-07Click!

Activity profile of AT4G36920 motif

Sorted Z-values of AT4G36920 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_26141726 6.23 AT1G69530.2
AT1G69530.1
AT1G69530.3
AT1G69530.5
AT1G69530.4
expansin A1
Chr5_-_18026077 6.00 AT5G44680.1
DNA glycosylase superfamily protein
Chr3_-_4008018 5.81 AT3G12610.1
Leucine-rich repeat (LRR) family protein
Chr4_+_12660687 5.53 AT4G24510.1
HXXXD-type acyl-transferase family protein
Chr3_-_2130451 5.06 AT3G06750.1
hydroxyproline-rich glycoprotein family protein
Chr2_-_9428170 5.01 AT2G22170.1
Lipase/lipooxygenase, PLAT/LH2 family protein
Chr5_+_4974671 4.50 AT5G15310.2
AT5G15310.4
AT5G15310.3
AT5G15310.1
myb domain protein 16
Chr1_+_418726 4.12 AT1G02205.4
AT1G02205.3
AT1G02205.5
AT1G02205.1
Fatty acid hydroxylase superfamily
Chr5_-_4299264 3.90 AT5G13400.1
Major facilitator superfamily protein
Chr5_-_2185972 3.85 AT5G07030.1
Eukaryotic aspartyl protease family protein
Chr2_+_9259511 3.78 AT2G21650.1
Homeodomain-like superfamily protein
Chr2_-_17837618 3.65 AT2G42870.1
phy rapidly regulated 1
Chr4_-_11604637 3.46 AT4G21870.1
HSP20-like chaperones superfamily protein
Chr5_-_671687 3.24 AT5G02890.1
HXXXD-type acyl-transferase family protein
Chr1_+_418416 3.20 AT1G02205.2
Fatty acid hydroxylase superfamily
Chr1_+_4877506 3.14 AT1G14280.1
phytochrome kinase substrate 2
Chr3_+_18635758 3.00 AT3G50270.1
HXXXD-type acyl-transferase family protein
Chr1_+_4084162 2.95 AT1G12080.1
AT1G12080.2
Vacuolar calcium-binding protein-like protein
Chr1_-_8310916 2.90 AT1G23390.1
Kelch repeat-containing F-box family protein
Chr2_+_17527167 2.77 AT2G41990.1
late embryogenesis abundant protein
Chr2_+_17507343 2.65 AT2G41940.1
zinc finger protein 8
Chr1_-_1063809 2.65 AT1G04110.1
Subtilase family protein
Chr3_+_20776220 2.58 AT3G55980.2
AT3G55980.1
salt-inducible zinc finger 1
Chr1_-_26804292 2.52 AT1G71050.1
Heavy metal transport/detoxification superfamily protein
Chr5_+_1765390 2.44 AT5G05860.1
UDP-glucosyl transferase 76C2
Chr1_-_27298649 2.43 AT1G72500.3
AT1G72500.2
AT1G72500.1
inter alpha-trypsin inhibitor, heavy chain-like protein
Chr4_-_2332814 2.41 AT4G04630.1
senescence regulator (Protein of unknown function, DUF584)
Chr5_-_23785512 2.40 AT5G58900.1
Homeodomain-like transcriptional regulator
Chr1_+_18209194 2.26 AT1G49230.1
RING/U-box superfamily protein
Chr4_-_12992585 2.25 AT4G25420.2
AT4G25420.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_25040540 2.14 AT5G62360.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr4_+_5740219 2.10 AT4G08950.1
Phosphate-responsive 1 family protein
Chr2_+_16273897 2.04 AT2G38970.1
Zinc finger (C3HC4-type RING finger) family protein
Chr4_-_524249 2.02 AT4G01250.1
WRKY family transcription factor
Chr3_-_10287758 2.00 AT3G27770.2
plant/protein
Chr3_-_10287931 1.98 AT3G27770.1
plant/protein
Chr1_-_23892193 1.97 AT1G64380.1
Integrase-type DNA-binding superfamily protein
Chr2_-_19407098 1.83 AT2G47260.1
WRKY DNA-binding protein 23
Chr1_+_28377377 1.79 AT1G75580.1
SAUR-like auxin-responsive protein family
Chr3_+_20673564 1.76 AT3G55710.1
UDP-Glycosyltransferase superfamily protein
Chr4_-_17640925 1.69 AT4G37540.1
LOB domain-containing protein 39
Chr3_+_21738883 1.63 AT3G58780.5
K-box region and MADS-box transcription factor family protein
Chr2_+_11279913 1.62 AT2G26520.1
transmembrane protein
Chr3_+_21738460 1.61 AT3G58780.2
K-box region and MADS-box transcription factor family protein
Chr1_+_27659673 1.60 AT1G73590.1
Auxin efflux carrier family protein
Chr4_-_13460105 1.57 AT4G26690.1
PLC-like phosphodiesterase family protein
Chr1_+_4908249 1.56 AT1G14350.1
AT1G14350.4
Duplicated homeodomain-like superfamily protein
Chr5_-_5741500 1.53 AT5G17420.1
Cellulose synthase family protein
Chr1_+_4907887 1.52 AT1G14350.2
AT1G14350.3
Duplicated homeodomain-like superfamily protein
Chr4_-_14117367 1.51 AT4G28560.1
ROP-interactive CRIB motif-containing protein 7
Chr1_+_26604855 1.49 AT1G70560.1
tryptophan aminotransferase of Arabidopsis 1
Chr3_-_9486924 1.46 AT3G25905.1
CLAVATA3/ESR-RELATED 27
Chr1_-_6683533 1.43 AT1G19330.3
AT1G19330.1
AT1G19330.2
histone deacetylase complex subunit
Chr3_+_21738160 1.40 AT3G58780.4
AT3G58780.1
AT3G58780.3
K-box region and MADS-box transcription factor family protein
Chr3_+_16525245 1.36 AT3G45140.1
AT3G45140.2
lipoxygenase 2
Chr5_-_24292162 1.34 AT5G60400.2
AT5G60400.1
AT5G60400.3
hypothetical protein
Chr3_-_15775873 1.33 AT3G43960.1
Cysteine proteinases superfamily protein
Chr5_+_25836514 1.27 AT5G64640.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr3_+_6710349 1.20 AT3G19370.3
AT3G19370.1
filament-like protein (DUF869)
Chr3_+_6710720 1.19 AT3G19370.2
filament-like protein (DUF869)
Chr3_-_19453212 1.14 AT3G52480.1
transmembrane protein
Chr1_-_6791919 1.12 AT1G19640.1
jasmonic acid carboxyl methyltransferase
Chr1_-_2229357 1.06 AT1G07260.1
UDP-glucosyl transferase 71C3
Chr1_-_371090 1.05 AT1G02070.1
zinc ion-binding protein
Chr3_+_3923735 1.03 AT3G12320.2
hypothetical protein
Chr4_-_8138392 0.99 AT4G14130.1
xyloglucan endotransglucosylase/hydrolase 15
Chr1_+_3957284 0.98 AT1G11730.1
Galactosyltransferase family protein
Chr1_+_30133718 0.97 AT1G80100.3
AT1G80100.1
AT1G80100.2
histidine phosphotransfer protein 6
Chr3_+_16818347 0.97 AT3G45780.2
phototropin 1
Chr3_+_16816721 0.97 AT3G45780.1
phototropin 1
Chr5_-_4450864 0.96 AT5G13790.1
AT5G13790.2
AGAMOUS-like 15
Chr4_+_10382856 0.95 AT4G18960.2
AT4G18960.4
AT4G18960.1
AT4G18960.3
K-box region and MADS-box transcription factor family protein
Chr3_+_3923515 0.92 AT3G12320.1
hypothetical protein
Chr1_+_5283268 0.91 AT1G15360.2
AT1G15360.1
Integrase-type DNA-binding superfamily protein
Chr3_+_3923969 0.90 AT3G12320.3
hypothetical protein
Chr1_-_26796529 0.87 AT1G71030.1
AT1G71030.2
MYB-like 2
Chr1_+_19806263 0.83 AT1G53160.1
AT1G53160.2
AT1G53160.3
squamosa promoter binding protein-like 4
Chr2_+_19104632 0.78 AT2G46530.1
AT2G46530.2
auxin response factor 11
Chr4_+_17368915 0.78 AT4G36870.2
BEL1-like homeodomain 2
Chr4_-_9296089 0.77 AT4G16490.1
ARM repeat superfamily protein
Chr2_+_19105112 0.76 AT2G46530.3
auxin response factor 11
Chr4_-_1500100 0.73 AT4G03400.2
Auxin-responsive GH3 family protein
Chr4_+_12497055 0.72 AT4G24050.2
AT4G24050.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_28490443 0.70 AT1G75880.2
AT1G75880.1
SGNH hydrolase-type esterase superfamily protein
Chr2_+_6018558 0.68 AT2G14210.2
AT2G14210.1
AGAMOUS-like 44
Chr5_+_26765992 0.66 AT5G67060.2
AT5G67060.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_-_1501599 0.64 AT4G03400.1
Auxin-responsive GH3 family protein
Chr4_+_17369179 0.64 AT4G36870.3
AT4G36870.1
AT4G36870.4
BEL1-like homeodomain 2
Chr4_+_7669948 0.64 AT4G13210.2
AT4G13210.1
Pectin lyase-like superfamily protein
Chr2_+_17820114 0.62 AT2G42830.1
AT2G42830.2
K-box region and MADS-box transcription factor family protein
Chr2_-_12228543 0.57 AT2G28550.6
AT2G28550.5
AT2G28550.4
AT2G28550.3
AT2G28550.1
AT2G28550.2
related to AP2.7
Chr2_-_11095542 0.55 AT2G26040.1
PYR1-like 2
Chr1_+_10230085 0.50 AT1G29270.2
transcription factor bHLH35-like protein
Chr1_+_10229808 0.49 AT1G29270.1
transcription factor bHLH35-like protein
Chr4_-_10529092 0.45 AT4G19240.1
hypothetical protein
Chr2_-_10704825 0.38 AT2G25150.1
HXXXD-type acyl-transferase family protein
Chr4_+_13639963 0.38 AT4G27240.2
zinc finger (C2H2 type) family protein
Chr2_+_7275657 0.35 AT2G16760.1
Calcium-dependent phosphotriesterase superfamily protein
Chr1_-_13229796 0.34 AT1G35730.1
AT1G35730.2
pumilio 9
Chr4_+_13639641 0.32 AT4G27240.1
zinc finger (C2H2 type) family protein
Chr1_+_19783185 0.27 AT1G53090.3
AT1G53090.1
AT1G53090.2
AT1G53090.5
AT1G53090.4
SPA1-related 4
Chr2_-_8008681 0.26 AT2G18470.3
roline-rich extensin-like receptor kinase 4
Chr2_-_17810265 0.21 AT2G42800.1
receptor like protein 29
Chr1_+_415074 0.19 AT1G02190.1
AT1G02190.2
Fatty acid hydroxylase superfamily
Chr5_-_24765511 0.18 AT5G61590.1
Integrase-type DNA-binding superfamily protein
Chr5_-_8468173 0.16 AT5G24710.1
Transducin/WD40 repeat-like superfamily protein
Chr5_-_18800115 0.15 AT5G46340.2
AT5G46340.1
O-acetyltransferase family protein
Chr1_+_4542168 0.11 AT1G13260.1
related to ABI3/VP1 1
Chr1_-_7958464 0.09 AT1G22530.2
AT1G22530.1
PATELLIN 2
Chr1_-_19081451 0.07 AT1G51460.1
ABC-2 type transporter family protein
Chr5_+_6833564 0.06 AT5G20250.2
AT5G20250.1
AT5G20250.4
AT5G20250.3
Raffinose synthase family protein
Chr4_+_1116972 0.04 AT4G02540.2
AT4G02540.1
Cysteine/Histidine-rich C1 domain family protein
Chr2_-_15955752 0.01 AT2G38110.1
glycerol-3-phosphate acyltransferase 6

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G36920

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 4.5 GO:0035017 cuticle pattern formation(GO:0035017)
1.2 7.3 GO:0043447 alkane biosynthetic process(GO:0043447)
1.0 5.8 GO:0009650 UV protection(GO:0009650)
0.8 3.1 GO:0050891 regulation of body fluid levels(GO:0050878) multicellular organismal water homeostasis(GO:0050891)
0.6 2.5 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.6 2.4 GO:0016139 glycoside catabolic process(GO:0016139)
0.5 1.4 GO:0010597 green leaf volatile biosynthetic process(GO:0010597)
0.4 1.9 GO:0034766 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.4 1.1 GO:0010113 negative regulation of systemic acquired resistance(GO:0010113)
0.3 6.2 GO:0006949 syncytium formation(GO:0006949)
0.3 1.3 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.3 1.6 GO:0010338 leaf formation(GO:0010338)
0.3 5.5 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.3 1.5 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.3 5.1 GO:0009641 shade avoidance(GO:0009641)
0.2 3.9 GO:0015833 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.2 1.9 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.2 6.0 GO:0006284 base-excision repair(GO:0006284)
0.2 1.4 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.2 0.8 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.2 0.7 GO:0048462 transmitting tissue development(GO:0010500) carpel formation(GO:0048462)
0.2 2.2 GO:0048572 short-day photoperiodism(GO:0048572) short-day photoperiodism, flowering(GO:0048575)
0.2 4.2 GO:0010103 stomatal complex morphogenesis(GO:0010103)
0.1 4.2 GO:0010166 wax metabolic process(GO:0010166)
0.1 2.5 GO:0009638 phototropism(GO:0009638)
0.1 0.9 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 3.5 GO:0051259 protein oligomerization(GO:0051259)
0.1 0.7 GO:0071249 cellular response to nitrate(GO:0071249)
0.1 1.0 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.1 3.8 GO:0010114 response to red light(GO:0010114)
0.1 1.1 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.0 1.0 GO:0010218 response to far red light(GO:0010218)
0.0 1.5 GO:0045168 cell-cell signaling involved in cell fate commitment(GO:0045168)
0.0 2.1 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.0 0.5 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.4 GO:0008216 spermidine metabolic process(GO:0008216)
0.0 4.4 GO:0010200 response to chitin(GO:0010200)
0.0 1.3 GO:0052542 defense response by callose deposition(GO:0052542)
0.0 1.9 GO:0048481 plant ovule development(GO:0048481)
0.0 1.0 GO:0010089 xylem development(GO:0010089)
0.0 2.2 GO:0009741 response to brassinosteroid(GO:0009741)
0.0 0.1 GO:0080051 cutin transport(GO:0080051)
0.0 1.3 GO:0048767 root hair elongation(GO:0048767)
0.0 0.2 GO:1990937 xylan acetylation(GO:1990937)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.6 GO:0009925 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.5 2.6 GO:0009897 external side of plasma membrane(GO:0009897)
0.4 1.5 GO:0010330 cellulose synthase complex(GO:0010330)
0.1 1.9 GO:0009986 cell surface(GO:0009986)
0.1 1.5 GO:0016324 apical plasma membrane(GO:0016324)
0.0 6.7 GO:0009505 plant-type cell wall(GO:0009505)
0.0 1.3 GO:0005764 lysosome(GO:0005764)
0.0 4.5 GO:0099503 secretory vesicle(GO:0099503)
0.0 7.3 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.0 3.9 GO:0030312 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 1.4 GO:0000790 nuclear chromatin(GO:0000790)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.4 7.3 GO:0009924 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.6 5.0 GO:0004096 catalase activity(GO:0004096)
0.5 6.0 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.4 2.2 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.4 1.5 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.4 1.1 GO:0004134 4-alpha-glucanotransferase activity(GO:0004134)
0.3 1.4 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.2 1.9 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 1.0 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.1 1.6 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.1 1.6 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.1 4.2 GO:0080044 quercetin 7-O-glucosyltransferase activity(GO:0080044)
0.1 1.0 GO:0009927 histidine phosphotransfer kinase activity(GO:0009927)
0.1 3.9 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.1 3.5 GO:0043621 protein self-association(GO:0043621)
0.0 1.5 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 1.4 GO:0016881 acid-amino acid ligase activity(GO:0016881)
0.0 12.3 GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups(GO:0016747)
0.0 8.3 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012)
0.0 0.5 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.6 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 2.6 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 1.3 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 1.3 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.7 GO:0016746 transferase activity, transferring acyl groups(GO:0016746)
0.0 1.9 GO:0003712 transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
2.2 8.9 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
0.1 0.9 PID E2F PATHWAY E2F transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 7.3 REACTOME DEVELOPMENTAL BIOLOGY Genes involved in Developmental Biology
0.2 1.6 REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES Genes involved in Antiviral mechanism by IFN-stimulated genes
0.1 0.9 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1