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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G36780
Z-value: 1.17
Transcription factors associated with AT4G36780
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G36780
|
AT4G36780 | BES1/BZR1 homolog 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BEH2 | arTal_v1_Chr4_-_17334355_17334355 | 0.09 | 6.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 3.73 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr1_+_21207537_21207537 Show fit | 3.43 |
AT1G56600.1
|
galactinol synthase 2 |
|
| arTal_v1_Chr1_+_11310997_11310997 Show fit | 2.97 |
AT1G31580.1
|
ECS1 |
|
| arTal_v1_Chr1_+_8542212_8542212 Show fit | 2.82 |
AT1G24147.1
|
transmembrane protein |
|
| arTal_v1_Chr5_-_3402389_3402389 Show fit | 2.73 |
AT5G10760.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 2.67 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 2.65 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_19515143_19515151 Show fit | 2.56 |
AT1G52400.3
AT1G52400.2 |
beta glucosidase 18 |
|
| arTal_v1_Chr1_+_19514989_19514989 Show fit | 2.46 |
AT1G52400.1
|
beta glucosidase 18 |
|
| arTal_v1_Chr1_+_1882907_1882907 Show fit | 2.43 |
AT1G06160.1
|
octadecanoid-responsive AP2/ERF 59 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G36780
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 5.2 | GO:0009819 | drought recovery(GO:0009819) |
| 0.2 | 5.1 | GO:0030091 | protein repair(GO:0030091) |
| 0.4 | 4.7 | GO:0009610 | response to symbiotic fungus(GO:0009610) |
| 0.3 | 4.7 | GO:0030104 | water homeostasis(GO:0030104) |
| 0.2 | 4.7 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.3 | 4.2 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
| 0.6 | 4.0 | GO:0006021 | inositol biosynthetic process(GO:0006021) |
| 0.2 | 3.9 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 3.8 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.3 | 3.5 | GO:2000896 | amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.1 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.2 | 7.3 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 6.4 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 5.6 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 5.6 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 5.4 | GO:0044434 | chloroplast part(GO:0044434) |
| 0.5 | 5.0 | GO:0010168 | ER body(GO:0010168) |
| 0.1 | 4.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 3.6 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 2.8 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 43.9 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.1 | 4.6 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.0 | 4.5 | GO:0008422 | beta-glucosidase activity(GO:0008422) |
| 0.4 | 4.4 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.5 | 4.3 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 1.0 | 4.0 | GO:0004512 | inositol-3-phosphate synthase activity(GO:0004512) |
| 0.0 | 3.9 | GO:0030246 | carbohydrate binding(GO:0030246) |
| 0.6 | 3.7 | GO:0004848 | ureidoglycolate hydrolase activity(GO:0004848) |
| 0.1 | 3.7 | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor(GO:0016671) |
| 0.1 | 3.2 | GO:0016168 | chlorophyll binding(GO:0016168) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.5 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.0 | 0.5 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.4 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.1 | 0.4 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
| 0.1 | 0.4 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
| 0.1 | 0.4 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.2 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.0 | 0.2 | PID CDC42 PATHWAY | CDC42 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.5 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.4 | 1.2 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.3 | 0.8 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.6 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.1 | 0.5 | REACTOME SIGNALING BY NOTCH1 | Genes involved in Signaling by NOTCH1 |
| 0.1 | 0.5 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 0.3 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |
| 0.1 | 0.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.3 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |