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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G36740
Z-value: 1.25
Transcription factors associated with AT4G36740
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G36740
|
AT4G36740 | homeobox protein 40 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB40 | arTal_v1_Chr4_-_17316374_17316441 | -0.23 | 2.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 5.95 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 5.81 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 5.67 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 5.38 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 5.31 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 5.11 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 4.96 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 4.86 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 4.81 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 4.77 |
AT3G01500.3
|
carbonic anhydrase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G36740
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 30.3 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 1.5 | 28.7 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.3 | 28.5 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 2.1 | 26.9 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.7 | 25.4 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.5 | 21.9 | GO:0009767 | photosynthetic electron transport chain(GO:0009767) |
| 0.3 | 19.5 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.8 | 17.6 | GO:0042044 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.3 | 13.9 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.1 | 13.5 | GO:0080167 | response to karrikin(GO:0080167) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 168.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.4 | 95.9 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.3 | 62.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 45.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.9 | 40.5 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 39.6 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.3 | 37.5 | GO:0009579 | thylakoid(GO:0009579) |
| 0.2 | 35.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.7 | 31.0 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 18.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 36.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 27.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 1.1 | 25.2 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 24.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.4 | 23.8 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.8 | 20.0 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.9 | 19.9 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 18.5 | GO:0043531 | ADP binding(GO:0043531) |
| 0.3 | 16.3 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.8 | 15.7 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.4 | 18.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 1.3 | 5.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.4 | 4.3 | PID E2F PATHWAY | E2F transcription factor network |
| 0.3 | 3.1 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.4 | 2.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.4 | 1.7 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.3 | 1.7 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.5 | 1.4 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 1.1 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.8 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.5 | 27.1 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 1.2 | 3.6 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.7 | 3.4 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.3 | 2.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.7 | 2.1 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.4 | 2.1 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.6 | 1.9 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.3 | 1.6 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.3 | 1.4 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.3 | 1.3 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |