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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G36620
Z-value: 1.31
Transcription factors associated with AT4G36620
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G36620
|
AT4G36620 | GATA transcription factor 19 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GATA19 | arTal_v1_Chr4_-_17269999_17269999 | -0.52 | 4.2e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_24362054_24362054 Show fit | 5.73 |
AT1G65520.1
|
delta(3), delta(2)-enoyl CoA isomerase 1 |
|
| arTal_v1_Chr5_-_24317935_24317935 Show fit | 4.52 |
AT5G60460.2
|
Preprotein translocase Sec, Sec61-beta subunit protein |
|
| arTal_v1_Chr1_-_19690589_19690589 Show fit | 4.47 |
AT1G52880.1
|
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
|
| arTal_v1_Chr5_-_24318241_24318241 Show fit | 4.46 |
AT5G60460.1
|
Preprotein translocase Sec, Sec61-beta subunit protein |
|
| arTal_v1_Chr4_-_10404393_10404393 Show fit | 3.78 |
AT4G18990.1
AT4G18990.2 |
xyloglucan endotransglucosylase/hydrolase 29 |
|
| arTal_v1_Chr2_+_15158561_15158561 Show fit | 3.45 |
AT2G36090.1
|
F-box family protein |
|
| arTal_v1_Chr2_+_1515828_1515828 Show fit | 3.32 |
AT2G04350.2
|
AMP-dependent synthetase and ligase family protein |
|
| arTal_v1_Chr2_+_1515634_1515634 Show fit | 3.30 |
AT2G04350.1
|
AMP-dependent synthetase and ligase family protein |
|
| arTal_v1_Chr4_+_12564945_12564945 Show fit | 3.09 |
AT4G24220.1
AT4G24220.2 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr5_-_19733025_19733156 Show fit | 3.08 |
AT5G48655.3
AT5G48655.4 AT5G48655.6 AT5G48655.5 AT5G48655.1 AT5G48655.2 |
RING/U-box superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G36620
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 10.7 | GO:0031204 | posttranslational protein targeting to membrane, translocation(GO:0031204) |
| 0.0 | 6.6 | GO:0006631 | fatty acid metabolic process(GO:0006631) |
| 0.0 | 6.4 | GO:0006486 | protein glycosylation(GO:0006486) macromolecule glycosylation(GO:0043413) |
| 0.1 | 5.7 | GO:0006635 | fatty acid beta-oxidation(GO:0006635) |
| 0.3 | 4.5 | GO:0048317 | seed morphogenesis(GO:0048317) |
| 0.1 | 3.8 | GO:0030042 | actin filament depolymerization(GO:0030042) |
| 0.3 | 3.2 | GO:0002221 | pattern recognition receptor signaling pathway(GO:0002221) |
| 0.0 | 3.1 | GO:0010051 | xylem and phloem pattern formation(GO:0010051) |
| 0.0 | 3.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 2.9 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 16.3 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 1.8 | 10.7 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.0 | 4.0 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 3.8 | GO:0015629 | actin cytoskeleton(GO:0015629) |
| 0.0 | 3.0 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.0 | 3.0 | GO:0016021 | integral component of membrane(GO:0016021) |
| 0.7 | 2.8 | GO:0018444 | translation release factor complex(GO:0018444) |
| 0.0 | 2.4 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.5 | 2.1 | GO:0000220 | vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220) |
| 0.1 | 2.0 | GO:0005758 | mitochondrial intermembrane space(GO:0005758) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 10.7 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
| 0.6 | 6.6 | GO:0102391 | decanoate--CoA ligase activity(GO:0102391) |
| 1.4 | 5.7 | GO:0016856 | racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856) |
| 0.1 | 3.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 3.8 | GO:0051015 | actin filament binding(GO:0051015) |
| 0.1 | 3.6 | GO:0035091 | phosphatidylinositol binding(GO:0035091) |
| 0.2 | 3.2 | GO:0004709 | MAP kinase kinase kinase activity(GO:0004709) |
| 1.0 | 3.1 | GO:0035671 | enone reductase activity(GO:0035671) |
| 0.4 | 2.9 | GO:0060229 | phospholipase activator activity(GO:0016004) lipase activator activity(GO:0060229) |
| 0.0 | 2.9 | GO:0043492 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 2.3 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.5 | 0.5 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 5.7 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.3 | 2.3 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.1 | 1.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.6 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.1 | 0.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.3 | 0.5 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |