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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G36160
Z-value: 0.93
Transcription factors associated with AT4G36160
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G36160
|
AT4G36160 | NAC domain containing protein 76 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC076 | arTal_v1_Chr4_-_17113486_17113486 | 0.33 | 9.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 2.01 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr1_-_20385380_20385380 Show fit | 1.74 |
AT1G54570.1
|
Esterase/lipase/thioesterase family protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 1.71 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 1.70 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_+_1153740_1153740 Show fit | 1.68 |
AT5G04200.1
|
metacaspase 9 |
|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 1.65 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 1.59 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr5_+_4488476_4488476 Show fit | 1.55 |
AT5G13930.1
|
Chalcone and stilbene synthase family protein |
|
| arTal_v1_Chr4_-_9368852_9368852 Show fit | 1.53 |
AT4G16640.1
|
Matrixin family protein |
|
| arTal_v1_Chr3_-_19643276_19643282 Show fit | 1.52 |
AT3G52970.1
AT3G52970.2 |
cytochrome P450, family 76, subfamily G, polypeptide 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G36160
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 4.0 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.1 | 3.6 | GO:0046856 | phosphatidylinositol dephosphorylation(GO:0046856) |
| 0.1 | 2.9 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 2.9 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
| 0.4 | 2.7 | GO:0071732 | cellular response to nitric oxide(GO:0071732) |
| 0.9 | 2.6 | GO:0016124 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
| 0.9 | 2.6 | GO:0031115 | negative regulation of microtubule polymerization(GO:0031115) |
| 0.6 | 2.6 | GO:0033306 | phytol metabolic process(GO:0033306) |
| 0.4 | 2.6 | GO:0090548 | response to nitrate starvation(GO:0090548) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 5.5 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 4.5 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.1 | 4.3 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 4.2 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 3.8 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 3.1 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 2.6 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 2.1 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 1.9 | GO:0005764 | lysosome(GO:0005764) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.3 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 4.1 | GO:0003779 | actin binding(GO:0003779) |
| 0.4 | 4.0 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.5 | 3.5 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.2 | 3.1 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.1 | 3.1 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.2 | 3.0 | GO:0003978 | UDP-glucose 4-epimerase activity(GO:0003978) |
| 0.5 | 2.7 | GO:0050302 | aryl-aldehyde oxidase activity(GO:0018488) indole-3-acetaldehyde oxidase activity(GO:0050302) |
| 0.2 | 2.6 | GO:0008199 | ferric iron binding(GO:0008199) |
| 0.4 | 2.5 | GO:0080109 | indole-3-acetonitrile nitrile hydratase activity(GO:0080109) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.7 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 0.7 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.1 | 0.5 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.5 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.5 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.5 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.1 | 0.4 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.2 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.3 | 1.1 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.3 | 0.9 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.9 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.1 | 0.8 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.2 | 0.5 | REACTOME PKB MEDIATED EVENTS | Genes involved in PKB-mediated events |
| 0.1 | 0.4 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.4 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.0 | 0.4 | REACTOME ACTIVATION OF THE MRNA UPON BINDING OF THE CAP BINDING COMPLEX AND EIFS AND SUBSEQUENT BINDING TO 43S | Genes involved in Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S |
| 0.1 | 0.3 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |