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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G32730
Z-value: 1.00
Transcription factors associated with AT4G32730
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G32730
|
AT4G32730 | Homeodomain-like protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| PC-MYB1 | arTal_v1_Chr4_+_15790345_15790345 | -0.44 | 1.8e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 2.77 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 2.53 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 2.40 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 2.26 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 2.25 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 2.16 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 2.02 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 2.02 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 1.96 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr5_+_625254_625254 Show fit | 1.86 |
AT5G02760.1
|
Protein phosphatase 2C family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G32730
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 13.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 12.1 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.3 | 5.6 | GO:0042044 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.3 | 5.5 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.3 | 5.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 5.3 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.2 | 5.2 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.0 | 4.3 | GO:0007017 | microtubule-based process(GO:0007017) |
| 0.2 | 3.9 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.1 | 3.6 | GO:0010025 | wax biosynthetic process(GO:0010025) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 47.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 36.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 24.5 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 9.3 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 8.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 7.9 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 7.6 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 7.6 | GO:0048046 | apoplast(GO:0048046) |
| 0.3 | 6.3 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.1 | 4.7 | GO:0010287 | plastoglobule(GO:0010287) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 14.0 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.3 | 7.8 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 7.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 7.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 7.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.3 | 6.7 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.3 | 6.2 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.2 | 6.2 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.2 | 4.9 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.4 | 4.6 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 1.0 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.3 | 0.9 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.3 | 0.9 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 0.9 | PID ATM PATHWAY | ATM pathway |
| 0.2 | 0.8 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.7 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.6 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.3 | 0.5 | PID AURORA A PATHWAY | Aurora A signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 1.5 | REACTOME DNA STRAND ELONGATION | Genes involved in DNA strand elongation |
| 0.2 | 1.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.9 | REACTOME POST TRANSLATIONAL PROTEIN MODIFICATION | Genes involved in Post-translational protein modification |
| 0.3 | 0.8 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.2 | 0.8 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.2 | 0.6 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.6 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.1 | 0.6 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.5 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |