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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G31800
Z-value: 1.86
Transcription factors associated with AT4G31800
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G31800
|
AT4G31800 | WRKY DNA-binding protein 18 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY18 | arTal_v1_Chr4_+_15383633_15383633 | 0.80 | 3.9e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 5.31 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 5.29 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 4.79 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 4.76 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 4.61 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 4.60 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_-_18077517_18077517 Show fit | 4.43 |
AT2G43570.1
|
chitinase |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 4.27 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 4.26 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr2_+_12600914_12601033 Show fit | 4.21 |
AT2G29350.2
AT2G29350.1 AT2G29350.3 |
senescence-associated gene 13 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G31800
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 56.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 28.4 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.3 | 25.5 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.4 | 23.6 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.5 | 21.8 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 1.1 | 18.0 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.4 | 16.3 | GO:0072665 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.3 | 16.1 | GO:0031347 | regulation of defense response(GO:0031347) |
| 0.2 | 15.1 | GO:0018209 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.4 | 13.8 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 99.7 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 36.0 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 22.9 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 15.9 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.1 | 15.5 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 15.1 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.7 | 12.9 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.3 | 12.3 | GO:0005770 | late endosome(GO:0005770) |
| 0.1 | 12.1 | GO:0042025 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.2 | 11.7 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 69.6 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 34.9 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 25.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 25.3 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.1 | 22.0 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.0 | 20.9 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.1 | 17.4 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
| 0.3 | 16.2 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.3 | 15.6 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
| 0.2 | 14.2 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.2 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
| 0.4 | 2.7 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.8 | 2.5 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.5 | 2.5 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.2 | 2.5 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.8 | 2.3 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.6 | 1.9 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 1.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 1.1 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.3 | 0.8 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 5.2 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.5 | 4.7 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.5 | 3.9 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.4 | 3.8 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 0.6 | 3.4 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.5 | 3.2 | REACTOME BASE EXCISION REPAIR | Genes involved in Base Excision Repair |
| 0.6 | 2.8 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.6 | 2.4 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.3 | 2.3 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.2 | 1.5 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |