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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G31060

Z-value: 0.96

Transcription factors associated with AT4G31060

Gene Symbol Gene ID Gene Info
AT4G31060
AT4G31060 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT4G31060arTal_v1_Chr4_+_15116148_151161480.721.8e-05Click!

Activity profile of AT4G31060 motif

Sorted Z-values of AT4G31060 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_18098633 7.06 AT4G38770.1
PRP4
proline-rich protein 4
Chr3_+_5505360 6.10 AT3G16240.1
DELTA-TIP
delta tonoplast integral protein
Chr5_+_8863224 5.45 AT5G25460.1
DGR2
transmembrane protein, putative (Protein of unknown function, DUF642)
Chr2_-_18744322 5.32 AT2G45470.1
FLA8
FASCICLIN-like arabinogalactan protein 8
Chr1_+_27338034 5.16 AT1G72600.2
AT1G72600.1
AT1G72600
hydroxyproline-rich glycoprotein family protein
Chr2_+_2763449 4.65 AT2G06850.1
AT2G06850.2
XTH4
xyloglucan endotransglucosylase/hydrolase 4
Chr2_+_17592038 4.57 AT2G42220.1
AT2G42220
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr3_-_3357754 4.56 AT3G10720.2
AT3G10720
Plant invertase/pectin methylesterase inhibitor superfamily
Chr4_-_7493080 4.42 AT4G12730.1
FLA2
FASCICLIN-like arabinogalactan 2
Chr2_+_9844134 4.37 AT2G23130.1
AT2G23130.2
AGP17
arabinogalactan protein 17
Chr1_-_7043392 4.36 AT1G20340.1
DRT112
Cupredoxin superfamily protein
Chr3_-_23328789 4.34 AT3G63140.1
CSP41A
chloroplast stem-loop binding protein of 41 kDa
Chr2_-_17648945 4.34 AT2G42380.1
AT2G42380.4
AT2G42380.3
AT2G42380.2
AT2G42380.5
BZIP34
Basic-leucine zipper (bZIP) transcription factor family protein
Chr3_-_4744263 4.30 AT3G14240.1
AT3G14240
Subtilase family protein
Chr1_-_4530222 4.23 AT1G13250.1
GATL3
galacturonosyltransferase-like 3
Chr5_+_426226 4.21 AT5G02160.1
AT5G02160
transmembrane protein
Chr5_+_625254 4.21 AT5G02760.1
AT5G02760
Protein phosphatase 2C family protein
Chr5_-_8916856 4.09 AT5G25610.1
RD22
BURP domain-containing protein
Chr2_+_15059763 4.09 AT2G35860.1
FLA16
FASCICLIN-like arabinogalactan protein 16 precursor
Chr5_+_26767599 4.07 AT5G67070.1
RALFL34
ralf-like 34
Chr1_-_28419635 4.06 AT1G75680.1
GH9B7
glycosyl hydrolase 9B7
Chr4_+_17243583 4.01 AT4G36540.2
AT4G36540.1
BEE2
BR enhanced expression 2
Chr1_+_898480 4.00 AT1G03600.1
PSB27
photosystem II family protein
Chr2_+_13647699 3.99 AT2G32100.1
OFP16
ovate family protein 16
Chr2_-_15474717 3.92 AT2G36870.2
AT2G36870.1
XTH32
xyloglucan endotransglucosylase/hydrolase 32
Chr3_+_2717557 3.83 AT3G08940.2
AT3G08940.1
LHCB4.2
light harvesting complex photosystem II
Chr3_+_17949416 3.77 AT3G48460.1
AT3G48460
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_-_3356811 3.72 AT3G10720.1
AT3G10720
Plant invertase/pectin methylesterase inhibitor superfamily
Chr5_+_4087689 3.67 AT5G12940.1
AT5G12940
Leucine-rich repeat (LRR) family protein
Chr4_-_12768239 3.64 AT4G24770.1
RBP31
31-kDa RNA binding protein
Chr4_-_12769419 3.62 AT4G24770.2
RBP31
31-kDa RNA binding protein
Chr4_+_12876822 3.58 AT4G25080.6
AT4G25080.5
AT4G25080.2
AT4G25080.1
AT4G25080.3
AT4G25080.4
CHLM
magnesium-protoporphyrin IX methyltransferase
Chr2_+_8940833 3.56 AT2G20750.2
AT2G20750.1
EXPB1
expansin B1
Chr1_+_2047886 3.55 AT1G06680.2
PSBP-1
photosystem II subunit P-1
Chr1_+_2047634 3.54 AT1G06680.1
PSBP-1
photosystem II subunit P-1
Chr1_-_6319427 3.52 AT1G18360.1
AT1G18360
alpha/beta-Hydrolases superfamily protein
Chr5_+_16468327 3.50 AT5G41140.1
AT5G41140.2
AT5G41140
Myosin heavy chain-related protein
Chr4_-_13398307 3.49 AT4G26540.1
AT4G26540
Leucine-rich repeat receptor-like protein kinase family protein
Chr3_+_8586359 3.48 AT3G23805.1
RALFL24
ralf-like 24
Chr4_-_12772438 3.48 AT4G24780.1
AT4G24780.2
AT4G24780
Pectin lyase-like superfamily protein
Chr3_+_23345754 3.46 AT3G63200.1
PLP9
PATATIN-like protein 9
Chr4_-_7591259 3.43 AT4G12980.1
AT4G12980
Auxin-responsive family protein
Chr5_-_22560461 3.42 AT5G55730.2
AT5G55730.1
FLA1
FASCICLIN-like arabinogalactan 1
Chr5_+_2680401 3.42 AT5G08330.1
TCP11
TCP family transcription factor
Chr1_-_28603932 3.37 AT1G76240.1
AT1G76240
DUF241 domain protein (DUF241)
Chr1_+_17918207 3.33 AT1G48480.1
RKL1
receptor-like kinase 1
Chr1_-_26515188 3.33 AT1G70370.2
AT1G70370.1
PG2
polygalacturonase 2
Chr5_-_7419335 3.33 AT5G22390.1
AT5G22390
FANTASTIC four-like protein (DUF3049)
Chr1_-_21614169 3.31 AT1G58270.1
ZW9
TRAF-like family protein
Chr1_+_20101299 3.26 AT1G53840.1
PME1
pectin methylesterase 1
Chr3_-_8589754 3.25 AT3G23810.1
SAHH2
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr3_-_2334185 3.23 AT3G07320.1
AT3G07320
O-Glycosyl hydrolases family 17 protein
Chr4_-_17606924 3.20 AT4G37450.1
AT4G37450.2
AGP18
arabinogalactan protein 18
Chr1_+_28428671 3.18 AT1G75710.1
AT1G75710
C2H2-like zinc finger protein
Chr4_-_16806830 3.17 AT4G35320.1
AT4G35320
hypothetical protein
Chr3_+_22745514 3.16 AT3G61470.1
LHCA2
photosystem I light harvesting complex protein
Chr3_-_3108266 3.14 AT3G10080.1
AT3G10080.2
AT3G10080
RmlC-like cupins superfamily protein
Chr4_-_8307934 3.13 AT4G14440.1
HCD1
3-hydroxyacyl-CoA dehydratase 1
Chr3_-_6855513 3.12 AT3G19720.3
AT3G19720.2
AT3G19720.1
ARC5
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_14517393 3.12 AT4G29610.1
AT4G29610
Cytidine/deoxycytidylate deaminase family protein
Chr2_-_15797059 3.11 AT2G37660.1
AT2G37660
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_-_13958107 3.11 AT4G28080.1
AT4G28080
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_7545326 3.11 AT4G12880.2
ENODL19
early nodulin-like protein 19
Chr4_+_17986384 3.08 AT4G38430.1
ROPGEF1
rho guanyl-nucleotide exchange factor 1
Chr2_+_14216771 3.06 AT2G33570.1
GALS1
glycosyltransferase family protein (DUF23)
Chr3_-_19467455 3.05 AT3G52500.1
AT3G52500
Eukaryotic aspartyl protease family protein
Chr4_-_7545512 3.04 AT4G12880.1
ENODL19
early nodulin-like protein 19
Chr1_-_19101265 3.04 AT1G51500.1
ABCG12
ABC-2 type transporter family protein
Chr4_+_15401640 3.01 AT4G31840.1
ENODL15
early nodulin-like protein 15
Chr5_-_24990331 3.01 AT5G62220.1
GT18
glycosyltransferase 18
Chr3_-_7796310 3.01 AT3G22120.1
AT3G22120.2
CWLP
cell wall-plasma membrane linker protein
Chr3_+_11252807 2.99 AT3G29320.1
PHS1
Glycosyl transferase, family 35
Chr4_+_9803624 2.97 AT4G17600.1
LIL3:1
Chlorophyll A-B binding family protein
Chr5_+_2446669 2.96 AT5G07690.1
MYB29
myb domain protein 29
Chr3_+_7280792 2.92 AT3G20820.1
AT3G20820
Leucine-rich repeat (LRR) family protein
Chr5_+_1952505 2.91 AT5G06390.1
FLA17
FASCICLIN-like arabinogalactan protein 17 precursor
Chr1_-_16709713 2.91 AT1G44000.1
AT1G44000
STAY-GREEN-like protein
Chr2_+_14849357 2.91 AT2G35260.1
AT2G35260
CAAX protease self-immunity protein
Chr3_+_18262290 2.90 AT3G49260.1
AT3G49260.3
AT3G49260.2
AT3G49260.4
iqd21
IQ-domain 21
Chr4_+_160643 2.88 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr5_+_7168106 2.88 AT5G21100.1
AT5G21100
Plant L-ascorbate oxidase
Chr5_+_19825078 2.86 AT5G48900.1
AT5G48900
Pectin lyase-like superfamily protein
Chr2_+_1676999 2.86 AT2G04780.2
FLA7
FASCICLIN-like arabinoogalactan 7
Chr1_-_1768837 2.86 AT1G05850.2
AT1G05850.1
POM1
Chitinase family protein
Chr1_-_15607966 2.85 AT1G41830.1
SKS6
SKU5-similar 6
Chr4_-_17181261 2.85 AT4G36360.2
BGAL3
beta-galactosidase 3
Chr4_-_17181466 2.83 AT4G36360.1
BGAL3
beta-galactosidase 3
Chr1_+_23911024 2.83 AT1G64390.1
GH9C2
glycosyl hydrolase 9C2
Chr5_-_990630 2.83 AT5G03760.1
ATCSLA09
Nucleotide-diphospho-sugar transferases superfamily protein
Chr2_-_183639 2.79 AT2G01420.3
AT2G01420.1
AT2G01420.2
PIN4
Auxin efflux carrier family protein
Chr2_+_1676717 2.78 AT2G04780.1
FLA7
FASCICLIN-like arabinoogalactan 7
Chr3_+_1225919 2.78 AT3G04550.1
AT3G04550
rubisco accumulation factor-like protein
Chr1_-_18690503 2.77 AT1G50450.1
AT1G50450
Saccharopine dehydrogenase
Chr5_+_16768935 2.77 AT5G41900.1
AT5G41900
alpha/beta-Hydrolases superfamily protein
Chr3_-_18834834 2.76 AT3G50685.1
AT3G50685
anti-muellerian hormone type-2 receptor
Chr5_-_7652714 2.76 AT5G22880.1
HTB2
histone B2
Chr1_+_19879405 2.74 AT1G53300.1
TTL1
tetratricopetide-repeat thioredoxin-like 1
Chr3_-_8902835 2.73 AT3G24480.1
AT3G24480
Leucine-rich repeat (LRR) family protein
Chr5_+_6387341 2.73 AT5G19090.1
AT5G19090.4
AT5G19090.3
AT5G19090.2
AT5G19090
Heavy metal transport/detoxification superfamily protein
Chr3_-_4775258 2.73 AT3G14310.1
PME3
pectin methylesterase 3
Chr3_+_19639549 2.71 AT3G52960.1
AT3G52960
Thioredoxin superfamily protein
Chr1_-_25649254 2.70 AT1G68400.1
AT1G68400
leucine-rich repeat transmembrane protein kinase family protein
Chr2_+_8063023 2.70 AT2G18570.1
AT2G18570
UDP-Glycosyltransferase superfamily protein
Chr5_-_3728726 2.70 AT5G11590.1
TINY2
Integrase-type DNA-binding superfamily protein
Chr1_+_28458691 2.70 AT1G75800.1
AT1G75800
Pathogenesis-related thaumatin superfamily protein
Chr3_+_8610979 2.67 AT3G23840.1
AT3G23840
HXXXD-type acyl-transferase family protein
Chr1_-_24023424 2.65 AT1G64640.1
ENODL8
early nodulin-like protein 8
Chr4_-_15429113 2.64 AT4G31890.2
AT4G31890.1
AT4G31890.3
AT4G31890
ARM repeat superfamily protein
Chr1_-_19565270 2.64 AT1G52510.2
AT1G52510.1
AT1G52510
alpha/beta-Hydrolases superfamily protein
Chr1_-_3880391 2.63 AT1G11545.1
XTH8
xyloglucan endotransglucosylase/hydrolase 8
Chr4_-_7353117 2.61 AT4G12420.1
AT4G12420.2
SKU5
Cupredoxin superfamily protein
Chr5_-_26845294 2.61 AT5G67280.1
RLK
receptor-like kinase
Chr5_+_6670275 2.61 AT5G19730.1
AT5G19730
Pectin lyase-like superfamily protein
Chr4_-_11785937 2.61 AT4G22290.1
AT4G22290
Ubiquitin-specific protease family C19-related protein
Chr1_-_3443957 2.59 AT1G10470.3
AT1G10470.2
ARR4
response regulator 4
Chr4_+_10231218 2.57 AT4G18570.2
AT4G18570.1
AT4G18570
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_3444360 2.55 AT1G10470.1
ARR4
response regulator 4
Chr3_+_22373013 2.55 AT3G60530.1
GATA4
GATA transcription factor 4
Chr3_+_288741 2.54 AT3G01810.2
AT3G01810
EEIG1/EHBP1 protein amino-terminal domain protein
Chr1_+_21159736 2.54 AT1G56500.2
AT1G56500.1
AT1G56500.3
AT1G56500
haloacid dehalogenase-like hydrolase family protein
Chr4_-_9754161 2.54 AT4G17490.1
ERF6
ethylene responsive element binding factor 6
Chr5_+_24667873 2.53 AT5G61350.1
AT5G61350
Protein kinase superfamily protein
Chr3_-_9255083 2.53 AT3G25500.1
AFH1
formin homology 1
Chr4_+_18296388 2.53 AT4G39350.1
CESA2
cellulose synthase A2
Chr3_-_427095 2.52 AT3G02250.1
AT3G02250
O-fucosyltransferase family protein
Chr3_+_288538 2.52 AT3G01810.3
AT3G01810
EEIG1/EHBP1 protein amino-terminal domain protein
Chr3_-_2944457 2.50 AT3G09580.1
AT3G09580
FAD/NAD(P)-binding oxidoreductase family protein
Chr2_-_5051613 2.50 AT2G12462.1
AT2G12462
sterile alpha motif (SAM) domain protein
Chr4_-_12068538 2.50 AT4G23020.2
AT4G23020.1
TRM11
hypothetical protein
Chr3_-_1855063 2.49 AT3G06130.2
AT3G06130.1
AT3G06130
Heavy metal transport/detoxification superfamily protein
Chr3_-_5252697 2.49 AT3G15520.1
AT3G15520.2
AT3G15520.3
AT3G15520
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr3_-_1864566 2.48 AT3G06150.1
AT3G06150
cytochrome P450 family protein
Chr3_+_288158 2.47 AT3G01810.1
AT3G01810
EEIG1/EHBP1 protein amino-terminal domain protein
Chr3_+_10524181 2.47 AT3G28220.1
AT3G28220
TRAF-like family protein
Chr5_-_740319 2.47 AT5G03140.1
AT5G03140
Concanavalin A-like lectin protein kinase family protein
Chr1_+_5514262 2.45 AT1G16080.1
AT1G16080
nuclear protein
Chr1_-_28581315 2.45 AT1G76160.1
sks5
SKU5 similar 5
Chr3_-_7187521 2.44 AT3G20570.1
ENODL9
early nodulin-like protein 9
Chr2_+_1679307 2.43 AT2G04790.10
AT2G04790.6
AT2G04790.5
AT2G04790.7
AT2G04790.9
AT2G04790.8
AT2G04790.13
AT2G04790.12
AT2G04790.11
AT2G04790.14
AT2G04790.15
AT2G04790.16
AT2G04790.4
AT2G04790.3
AT2G04790.1
AT2G04790.2
AT2G04790
PTB domain engulfment adapter
Chr4_-_15312987 2.43 AT4G31590.1
CSLC5
Cellulose-synthase-like C5
Chr1_+_12188678 2.43 AT1G33610.1
AT1G33610
Leucine-rich repeat (LRR) family protein
Chr3_-_1832190 2.43 AT3G06070.1
AT3G06070
hypothetical protein
Chr1_-_29638773 2.42 AT1G78830.1
AT1G78830
Curculin-like (mannose-binding) lectin family protein
Chr1_-_10326848 2.41 AT1G29530.1
AT1G29530
hypothetical protein
Chr5_+_18894378 2.40 AT5G46570.1
BSK2
BR-signaling kinase 2
Chr3_+_5314817 2.37 AT3G15680.1
AT3G15680.2
AT3G15680
Ran BP2/NZF zinc finger-like superfamily protein
Chr4_-_14439723 2.36 AT4G29310.1
AT4G29310.2
AT4G29310
DUF1005 family protein (DUF1005)
Chr2_-_12685145 2.36 AT2G29670.2
AT2G29670.1
AT2G29670
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_1307973 2.35 AT1G04680.1
AT1G04680
Pectin lyase-like superfamily protein
Chr1_+_28327698 2.35 AT1G75460.1
AT1G75460
ATP-dependent protease La (LON) domain protein
Chr2_-_18778374 2.35 AT2G45560.3
AT2G45560.2
CYP76C1
cytochrome P450, family 76, subfamily C, polypeptide 1
Chr5_+_23559474 2.34 AT5G58250.1
EMB3143
YCF54
Chr5_-_22194559 2.33 AT5G54630.1
AT5G54630
zinc finger protein-like protein
Chr2_-_9062093 2.33 AT2G21140.1
PRP2
proline-rich protein 2
Chr1_+_20048434 2.33 AT1G53700.1
WAG1
WAG 1
Chr3_+_10517977 2.32 AT3G28200.1
AT3G28200
Peroxidase superfamily protein
Chr1_+_4735474 2.32 AT1G13820.1
AT1G13820
alpha/beta-Hydrolases superfamily protein
Chr2_-_16573519 2.31 AT2G39730.3
RCA
rubisco activase
Chr2_-_16573692 2.31 AT2G39730.1
AT2G39730.2
RCA
rubisco activase
Chr5_-_3709403 2.31 AT5G11550.1
AT5G11550
ARM repeat superfamily protein
Chr1_+_23144385 2.29 AT1G62520.1
AT1G62520
sulfated surface-like glycoprotein
Chr2_-_18778676 2.29 AT2G45560.1
CYP76C1
cytochrome P450, family 76, subfamily C, polypeptide 1
Chr5_-_23873691 2.29 AT5G59130.1
AT5G59130.2
AT5G59130.3
AT5G59130.4
AT5G59130
Subtilase family protein
Chr5_+_26061165 2.26 AT5G65220.1
AT5G65220
Ribosomal L29 family protein
Chr3_-_17138259 2.26 AT3G46550.1
SOS5
Fasciclin-like arabinogalactan family protein
Chr1_+_13026206 2.25 AT1G35420.1
AT1G35420.2
AT1G35420.3
AT1G35420
alpha/beta-Hydrolases superfamily protein
Chr1_+_9259750 2.25 AT1G26770.2
EXPA10
expansin A10
Chr5_+_2271890 2.25 AT5G07240.2
AT5G07240.1
IQD24
IQ-domain 24
Chr3_+_6105908 2.25 AT3G17840.1
RLK902
receptor-like kinase 902
Chr4_-_15574737 2.24 AT4G32260.1
PDE334
ATPase, F0 complex, subunit B/B', bacterial/chloroplast
Chr3_-_5227935 2.24 AT3G15480.1
AT3G15480
fiber (DUF1218)
Chr2_-_7768040 2.22 AT2G17880.1
AT2G17880
Chaperone DnaJ-domain superfamily protein
Chr5_+_26568572 2.22 AT5G66570.1
PSBO1
PS II oxygen-evolving complex 1
Chr5_-_671687 2.21 AT5G02890.1
AT5G02890
HXXXD-type acyl-transferase family protein
Chr4_-_10278794 2.20 AT4G18670.1
AT4G18670
Leucine-rich repeat (LRR) family protein
Chr2_+_18785990 2.20 AT2G45590.1
AT2G45590
Protein kinase superfamily protein
Chr5_-_17635915 2.20 AT5G43870.1
AT5G43870.2
AT5G43870
auxin canalization protein (DUF828)
Chr5_+_25243405 2.19 AT5G62890.3
AT5G62890.1
AT5G62890
Xanthine/uracil permease family protein
Chr1_-_19472582 2.19 AT1G52290.2
AT1G52290.1
PERK15
Protein kinase superfamily protein
Chr2_+_15106940 2.17 AT2G35960.1
NHL12
NDR1/HIN1-like 12
Chr1_-_20357879 2.17 AT1G54500.1
AT1G54500
Rubredoxin-like superfamily protein
Chr1_-_6805092 2.17 AT1G19670.1
CLH1
chlorophyllase 1
Chr3_+_10505711 2.15 AT3G28180.1
CSLC04
Cellulose-synthase-like C4
Chr4_-_13496738 2.15 AT4G26830.1
AT4G26830.2
AT4G26830
O-Glycosyl hydrolases family 17 protein
Chr5_+_25243148 2.15 AT5G62890.2
AT5G62890.4
AT5G62890
Xanthine/uracil permease family protein
Chr3_-_5812690 2.13 AT3G17040.2
AT3G17040.4
AT3G17040.3
AT3G17040.1
HCF107
high chlorophyll fluorescent 107
Chr1_-_7040231 2.12 AT1G20330.1
SMT2
sterol methyltransferase 2
Chr1_+_9259432 2.11 AT1G26770.1
EXPA10
expansin A10
Chr4_-_14002069 2.08 AT4G28250.2
AT4G28250.3
AT4G28250.4
AT4G28250.1
EXPB3
expansin B3
Chr5_+_15742543 2.08 AT5G39320.1
UDG4
UDP-glucose 6-dehydrogenase family protein
Chr1_-_22382422 2.07 AT1G60790.1
TBL2
trichome birefringence-like protein (DUF828)
Chr1_-_11124220 2.06 AT1G31160.2
AT1G31160.1
HINT 2
HISTIDINE TRIAD NUCLEOTIDE-BINDING 2
Chr1_-_26293173 2.06 AT1G69830.1
AMY3
alpha-amylase-like 3
Chr4_-_16330212 2.04 AT4G34090.2
AT4G34090.3
AT4G34090.1
AT4G34090
cyclin delta-3
Chr3_-_9428277 2.03 AT3G25805.1
AT3G25805
transmembrane protein
Chr3_+_22151164 2.03 AT3G59970.3
AT3G59970.2
AT3G59970.1
MTHFR1
methylenetetrahydrofolate reductase 1
Chr2_-_12415661 2.02 AT2G28900.1
OEP16-1
outer plastid envelope protein 16-1
Chr1_-_8559066 2.02 AT1G24170.1
LGT9
Nucleotide-diphospho-sugar transferases superfamily protein
Chr1_-_6860376 2.02 AT1G19835.1
AT1G19835.4
AT1G19835.6
AT1G19835.3
AT1G19835
filament-like protein (DUF869)
Chr3_+_17311672 2.02 AT3G46990.1
AT3G46990
DUF740 family protein, putative (DUF740)

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G31060

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
2.0 6.1 GO:0015840 urea transport(GO:0015840)
0.9 3.7 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.9 7.3 GO:0043489 RNA stabilization(GO:0043489)
0.9 3.4 GO:0080094 response to trehalose-6-phosphate(GO:0080094)
0.8 4.2 GO:0010360 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.8 3.3 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.8 3.9 GO:0042549 photosystem II stabilization(GO:0042549)
0.7 0.7 GO:0010253 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.6 1.9 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.6 2.5 GO:0051574 positive regulation of histone H3-K9 methylation(GO:0051574)
0.6 1.8 GO:0010198 synergid death(GO:0010198)
0.6 3.0 GO:0005980 glycogen catabolic process(GO:0005980)
0.6 3.0 GO:1903175 fatty alcohol biosynthetic process(GO:1903175)
0.6 2.9 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.6 1.7 GO:0035017 cuticle pattern formation(GO:0035017)
0.6 2.2 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.5 10.3 GO:0006949 syncytium formation(GO:0006949)
0.5 2.7 GO:0010422 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.5 3.1 GO:0006216 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.5 2.1 GO:0030203 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.5 3.1 GO:0051098 regulation of binding(GO:0051098)
0.5 2.5 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.5 8.3 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.5 4.4 GO:0009819 drought recovery(GO:0009819)
0.4 5.3 GO:0032544 plastid translation(GO:0032544)
0.4 1.3 GO:0009915 phloem sucrose loading(GO:0009915)
0.4 1.3 GO:1900386 positive regulation of flavonol biosynthetic process(GO:1900386)
0.4 2.0 GO:0010226 response to lithium ion(GO:0010226)
0.4 2.4 GO:0097502 mannosylation(GO:0097502)
0.4 1.6 GO:0051211 anisotropic cell growth(GO:0051211)
0.4 1.2 GO:0046102 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.4 8.0 GO:0010207 photosystem II assembly(GO:0010207)
0.4 1.1 GO:0009143 nucleoside triphosphate catabolic process(GO:0009143)
0.4 4.6 GO:0010158 abaxial cell fate specification(GO:0010158)
0.4 31.1 GO:0045490 pectin catabolic process(GO:0045490)
0.3 4.8 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.3 5.4 GO:0010315 auxin efflux(GO:0010315)
0.3 1.0 GO:0017145 stem cell division(GO:0017145)
0.3 0.9 GO:0001736 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.3 2.2 GO:1902969 mitotic DNA replication(GO:1902969)
0.3 7.0 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.3 1.2 GO:0010500 transmitting tissue development(GO:0010500) carpel formation(GO:0048462)
0.3 1.5 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.3 5.4 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.3 1.4 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.3 1.9 GO:0042344 indole glucosinolate catabolic process(GO:0042344)
0.3 1.7 GO:0009090 homoserine biosynthetic process(GO:0009090)
0.3 6.6 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.3 2.7 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.3 5.4 GO:0055070 copper ion homeostasis(GO:0055070)
0.3 0.8 GO:0006432 phenylalanyl-tRNA aminoacylation(GO:0006432)
0.3 1.3 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.3 1.6 GO:0044205 'de novo' UMP biosynthetic process(GO:0044205)
0.3 10.0 GO:0009825 multidimensional cell growth(GO:0009825)
0.3 1.8 GO:0009099 valine biosynthetic process(GO:0009099)
0.3 11.4 GO:0045489 pectin biosynthetic process(GO:0045489)
0.3 1.8 GO:0010067 procambium histogenesis(GO:0010067)
0.2 1.0 GO:0042450 arginine biosynthetic process via ornithine(GO:0042450)
0.2 4.0 GO:0009645 response to low light intensity stimulus(GO:0009645)
0.2 0.5 GO:0046683 response to organophosphorus(GO:0046683)
0.2 1.2 GO:0070525 tRNA threonylcarbamoyladenosine metabolic process(GO:0070525)
0.2 1.2 GO:0034051 negative regulation of plant-type hypersensitive response(GO:0034051)
0.2 2.3 GO:0009094 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.2 2.2 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.2 3.8 GO:0010380 regulation of chlorophyll biosynthetic process(GO:0010380)
0.2 2.2 GO:0009957 epidermal cell fate specification(GO:0009957)
0.2 1.3 GO:0048871 multicellular organismal homeostasis(GO:0048871)
0.2 1.1 GO:0007142 male meiosis II(GO:0007142)
0.2 2.5 GO:0007143 female meiotic division(GO:0007143)
0.2 2.6 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.2 2.0 GO:0043171 peptide catabolic process(GO:0043171)
0.2 1.0 GO:0015939 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.2 0.6 GO:0006056 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506) response to cobalt ion(GO:0032025)
0.2 0.6 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.2 0.7 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.2 1.3 GO:0045003 double-strand break repair via synthesis-dependent strand annealing(GO:0045003)
0.2 2.3 GO:0009554 megasporogenesis(GO:0009554)
0.2 1.1 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.2 0.5 GO:0035019 somatic stem cell population maintenance(GO:0035019)
0.2 2.7 GO:0051346 negative regulation of hydrolase activity(GO:0051346)
0.2 1.3 GO:0031222 arabinan catabolic process(GO:0031222)
0.2 2.3 GO:0010274 hydrotropism(GO:0010274)
0.2 0.6 GO:0001578 microtubule bundle formation(GO:0001578)
0.2 1.0 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.2 1.6 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.2 2.0 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.2 0.6 GO:0010047 fruit dehiscence(GO:0010047)
0.2 1.7 GO:0050898 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.1 1.9 GO:0007140 male meiosis(GO:0007140)
0.1 1.3 GO:0009799 specification of symmetry(GO:0009799)
0.1 12.5 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.1 0.9 GO:0048446 petal morphogenesis(GO:0048446)
0.1 0.7 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.1 2.6 GO:0019853 L-ascorbic acid biosynthetic process(GO:0019853)
0.1 1.0 GO:0043486 histone exchange(GO:0043486)
0.1 2.7 GO:0009269 response to desiccation(GO:0009269)
0.1 1.9 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.1 3.1 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.1 5.9 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.1 0.9 GO:0010088 phloem development(GO:0010088)
0.1 0.6 GO:0010117 photoprotection(GO:0010117)
0.1 3.0 GO:0043622 cortical microtubule organization(GO:0043622)
0.1 2.2 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.1 1.0 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.1 0.9 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.1 2.8 GO:0009294 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.1 0.7 GO:0052546 cell wall pectin metabolic process(GO:0052546)
0.1 0.3 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.1 1.7 GO:0052803 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.1 1.1 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.1 3.7 GO:0051225 spindle assembly(GO:0051225)
0.1 3.6 GO:0010025 wax biosynthetic process(GO:0010025)
0.1 3.3 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.1 6.3 GO:0009736 cytokinin-activated signaling pathway(GO:0009736)
0.1 7.2 GO:0071383 brassinosteroid mediated signaling pathway(GO:0009742) steroid hormone mediated signaling pathway(GO:0043401) cellular response to steroid hormone stimulus(GO:0071383)
0.1 0.6 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.1 6.0 GO:0007267 cell-cell signaling(GO:0007267)
0.1 1.0 GO:0051446 positive regulation of meiotic cell cycle(GO:0051446)
0.1 0.6 GO:0045910 negative regulation of DNA recombination(GO:0045910)
0.1 0.8 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.1 1.0 GO:0060688 regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032)
0.1 0.3 GO:0080117 secondary growth(GO:0080117)
0.1 1.5 GO:0071329 cellular response to sucrose stimulus(GO:0071329)
0.1 1.5 GO:0048497 negative regulation of cell differentiation(GO:0045596) maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.1 2.9 GO:0051667 chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667)
0.1 1.7 GO:0005986 sucrose biosynthetic process(GO:0005986)
0.1 0.4 GO:0070601 meiotic sister chromatid cohesion, centromeric(GO:0051754) centromeric sister chromatid cohesion(GO:0070601)
0.1 2.2 GO:0006754 ATP biosynthetic process(GO:0006754) energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.1 6.9 GO:0019684 photosynthesis, light reaction(GO:0019684)
0.1 4.3 GO:0016485 protein processing(GO:0016485)
0.1 1.0 GO:0009423 chorismate biosynthetic process(GO:0009423)
0.1 2.0 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.1 0.9 GO:1905177 tracheary element differentiation(GO:1905177)
0.1 1.5 GO:0050821 protein stabilization(GO:0050821)
0.1 1.4 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.1 1.9 GO:0072596 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.1 2.3 GO:0007129 synapsis(GO:0007129)
0.1 0.5 GO:0006526 arginine biosynthetic process(GO:0006526)
0.1 0.2 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.1 0.8 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.1 2.0 GO:1901068 guanosine-containing compound metabolic process(GO:1901068)
0.1 2.3 GO:0006334 nucleosome assembly(GO:0006334)
0.1 1.4 GO:0000373 Group II intron splicing(GO:0000373)
0.1 0.4 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.1 0.7 GO:0009704 de-etiolation(GO:0009704)
0.1 0.4 GO:0007266 Rho protein signal transduction(GO:0007266)
0.1 1.2 GO:0006268 DNA unwinding involved in DNA replication(GO:0006268)
0.1 0.3 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.1 1.6 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.1 0.3 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.1 1.7 GO:0010584 pollen exine formation(GO:0010584)
0.1 1.3 GO:0006282 regulation of DNA repair(GO:0006282)
0.1 1.5 GO:0008356 asymmetric cell division(GO:0008356)
0.1 0.1 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.1 1.5 GO:0010229 inflorescence development(GO:0010229)
0.1 1.3 GO:0006863 purine nucleobase transport(GO:0006863)
0.1 0.3 GO:0007023 post-chaperonin tubulin folding pathway(GO:0007023)
0.1 0.4 GO:0009201 CTP biosynthetic process(GO:0006241) ribonucleoside triphosphate biosynthetic process(GO:0009201) pyrimidine ribonucleoside triphosphate metabolic process(GO:0009208) pyrimidine ribonucleoside triphosphate biosynthetic process(GO:0009209) CTP metabolic process(GO:0046036)
0.1 3.7 GO:0009664 plant-type cell wall organization(GO:0009664)
0.1 0.2 GO:0033477 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.1 2.6 GO:0009832 plant-type cell wall biogenesis(GO:0009832)
0.1 0.5 GO:0010358 leaf shaping(GO:0010358)
0.1 1.7 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 0.5 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 1.5 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.0 0.3 GO:0032890 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.0 4.1 GO:0009630 gravitropism(GO:0009630)
0.0 0.4 GO:0009231 riboflavin metabolic process(GO:0006771) riboflavin biosynthetic process(GO:0009231)
0.0 1.5 GO:0000741 karyogamy(GO:0000741) polar nucleus fusion(GO:0010197)
0.0 1.0 GO:0046219 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.0 0.9 GO:0010143 cutin biosynthetic process(GO:0010143)
0.0 0.7 GO:0031425 chloroplast RNA processing(GO:0031425)
0.0 4.2 GO:0080167 response to karrikin(GO:0080167)
0.0 0.5 GO:0048658 anther wall tapetum development(GO:0048658)
0.0 0.4 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.0 0.4 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.0 0.2 GO:0031333 negative regulation of protein complex assembly(GO:0031333)
0.0 1.1 GO:0099518 vesicle transport along actin filament(GO:0030050) actin filament-based transport(GO:0099515) vesicle cytoskeletal trafficking(GO:0099518)
0.0 0.5 GO:0070475 rRNA base methylation(GO:0070475)
0.0 1.6 GO:0009637 response to blue light(GO:0009637)
0.0 0.5 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.5 GO:0010103 stomatal complex morphogenesis(GO:0010103)
0.0 0.2 GO:0010230 alternative respiration(GO:0010230)
0.0 0.1 GO:0055047 generative cell mitosis(GO:0055047)
0.0 0.4 GO:0009741 response to brassinosteroid(GO:0009741)
0.0 0.8 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 0.1 GO:0071731 response to nitric oxide(GO:0071731)
0.0 0.4 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.4 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.0 0.4 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.0 0.9 GO:0009817 defense response to fungus, incompatible interaction(GO:0009817)
0.0 0.3 GO:0045927 positive regulation of growth(GO:0045927)
0.0 1.2 GO:0009873 ethylene-activated signaling pathway(GO:0009873)
0.0 0.2 GO:0042753 positive regulation of circadian rhythm(GO:0042753)
0.0 0.9 GO:0006101 tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101)
0.0 1.1 GO:0015979 photosynthesis(GO:0015979)
0.0 0.5 GO:0006661 phosphatidylinositol biosynthetic process(GO:0006661)
0.0 0.3 GO:0007029 endoplasmic reticulum organization(GO:0007029)
0.0 0.4 GO:0016128 phytosteroid metabolic process(GO:0016128) brassinosteroid metabolic process(GO:0016131)
0.0 0.2 GO:0052542 defense response by callose deposition(GO:0052542)
0.0 0.4 GO:0006891 intra-Golgi vesicle-mediated transport(GO:0006891) retrograde transport, endosome to Golgi(GO:0042147)
0.0 0.1 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 5.2 GO:0009897 external side of plasma membrane(GO:0009897)
0.6 2.3 GO:0010330 cellulose synthase complex(GO:0010330)
0.5 1.5 GO:0009925 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.5 22.1 GO:0009543 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.4 2.0 GO:0001673 male germ cell nucleus(GO:0001673)
0.4 4.2 GO:0000326 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.3 2.2 GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)(GO:0045263)
0.3 1.3 GO:0031352 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
0.3 0.9 GO:0009501 amyloplast(GO:0009501)
0.3 39.5 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.2 2.2 GO:0042555 MCM complex(GO:0042555)
0.2 9.0 GO:0010319 stromule(GO:0010319)
0.2 1.7 GO:0032153 cell division site(GO:0032153)
0.2 1.0 GO:0000812 Swr1 complex(GO:0000812)
0.2 4.8 GO:0016324 apical plasma membrane(GO:0016324)
0.2 3.2 GO:0009522 photosystem I(GO:0009522)
0.2 2.7 GO:0009986 cell surface(GO:0009986)
0.2 0.5 GO:0043240 Fanconi anaemia nuclear complex(GO:0043240)
0.2 2.3 GO:0000795 synaptonemal complex(GO:0000795)
0.2 32.8 GO:0009505 plant-type cell wall(GO:0009505)
0.2 2.2 GO:0005880 nuclear microtubule(GO:0005880)
0.2 1.3 GO:0005884 actin filament(GO:0005884)
0.2 4.2 GO:0055028 cortical microtubule(GO:0055028)
0.1 7.2 GO:0005797 Golgi medial cisterna(GO:0005797)
0.1 0.8 GO:0000796 condensin complex(GO:0000796)
0.1 1.5 GO:0045298 tubulin complex(GO:0045298)
0.1 6.3 GO:0009707 chloroplast outer membrane(GO:0009707)
0.1 9.4 GO:0000138 Golgi trans cisterna(GO:0000138)
0.1 28.1 GO:0055035 plastid thylakoid membrane(GO:0055035)
0.1 0.4 GO:0042788 polysomal ribosome(GO:0042788)
0.1 1.6 GO:0009508 plastid chromosome(GO:0009508)
0.1 21.6 GO:0048046 apoplast(GO:0048046)
0.1 18.2 GO:0030312 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.1 7.9 GO:0009579 thylakoid(GO:0009579)
0.1 0.4 GO:0033061 DNA recombinase mediator complex(GO:0033061)
0.1 1.5 GO:0005871 kinesin complex(GO:0005871)
0.1 1.1 GO:0005769 early endosome(GO:0005769)
0.1 0.6 GO:0032300 mismatch repair complex(GO:0032300)
0.1 0.4 GO:0005828 condensed nuclear chromosome kinetochore(GO:0000778) kinetochore microtubule(GO:0005828)
0.1 0.3 GO:0010168 ER body(GO:0010168)
0.0 2.1 GO:0031969 chloroplast membrane(GO:0031969)
0.0 1.4 GO:0099512 microtubule(GO:0005874) supramolecular fiber(GO:0099512) polymeric cytoskeletal fiber(GO:0099513)
0.0 0.6 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)
0.0 3.9 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 0.4 GO:0019773 proteasome core complex, alpha-subunit complex(GO:0019773)
0.0 70.1 GO:0005576 extracellular region(GO:0005576)
0.0 0.5 GO:0044815 DNA packaging complex(GO:0044815)
0.0 0.3 GO:0071782 endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827)
0.0 0.2 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.0 0.1 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.0 1.4 GO:0010008 endosome membrane(GO:0010008)
0.0 1.2 GO:0022627 cytosolic small ribosomal subunit(GO:0022627)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.0 6.1 GO:0015204 ammonium transmembrane transporter activity(GO:0008519) urea transmembrane transporter activity(GO:0015204)
1.2 2.4 GO:0051753 beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753)
1.1 3.3 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.8 1.6 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.7 3.0 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.7 23.8 GO:0008266 poly(U) RNA binding(GO:0008266)
0.7 2.9 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.7 1.4 GO:0047912 galacturonokinase activity(GO:0047912)
0.7 3.4 GO:0004001 adenosine kinase activity(GO:0004001)
0.6 2.9 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.6 1.7 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.6 1.7 GO:0004412 homoserine dehydrogenase activity(GO:0004412)
0.5 3.1 GO:0004126 cytidine deaminase activity(GO:0004126)
0.5 2.1 GO:0004556 alpha-amylase activity(GO:0004556)
0.5 4.2 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.5 2.7 GO:0051723 protein methylesterase activity(GO:0051723)
0.4 8.9 GO:0005199 structural constituent of cell wall(GO:0005199)
0.4 2.2 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.4 2.9 GO:0016681 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.4 2.1 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.4 2.5 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.4 1.2 GO:0004359 glutaminase activity(GO:0004359)
0.4 3.5 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.4 1.1 GO:1990518 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.4 11.9 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.4 1.1 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.3 1.0 GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849)
0.3 1.0 GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity(GO:0003864)
0.3 1.8 GO:0052655 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.3 5.4 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.3 1.5 GO:0042085 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.3 19.2 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.3 1.2 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.3 2.0 GO:0003885 D-arabinono-1,4-lactone oxidase activity(GO:0003885)
0.3 8.4 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.3 1.4 GO:0010313 phytochrome binding(GO:0010313)
0.3 1.1 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.3 1.7 GO:0070905 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.3 2.5 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.3 1.9 GO:0030332 cyclin binding(GO:0030332)
0.3 7.0 GO:0016168 chlorophyll binding(GO:0016168)
0.3 0.8 GO:0004826 phenylalanine-tRNA ligase activity(GO:0004826)
0.3 1.3 GO:0004127 cytidylate kinase activity(GO:0004127)
0.3 1.3 GO:0070035 ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) purine NTP-dependent helicase activity(GO:0070035)
0.3 1.3 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.3 6.9 GO:0008810 cellulase activity(GO:0008810)
0.3 6.3 GO:0004565 beta-galactosidase activity(GO:0004565)
0.2 2.2 GO:0043495 protein anchor(GO:0043495)
0.2 1.5 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
0.2 9.6 GO:0016759 cellulose synthase activity(GO:0016759)
0.2 1.0 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.2 0.9 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.2 9.3 GO:0045735 nutrient reservoir activity(GO:0045735)
0.2 2.7 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.2 0.7 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.2 3.1 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.2 4.3 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.2 1.7 GO:0050307 sucrose-phosphate phosphatase activity(GO:0050307)
0.2 1.1 GO:0043682 copper-transporting ATPase activity(GO:0043682)
0.2 1.0 GO:0034511 U3 snoRNA binding(GO:0034511)
0.2 5.0 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.2 0.6 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.2 1.2 GO:0019904 protein domain specific binding(GO:0019904)
0.2 6.5 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.2 2.9 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.2 1.0 GO:0004049 anthranilate synthase activity(GO:0004049)
0.2 1.9 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.2 0.6 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.2 0.7 GO:0015930 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.2 2.0 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.2 4.4 GO:0004568 chitinase activity(GO:0004568)
0.2 1.6 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.2 1.0 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.2 3.3 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.2 0.5 GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity(GO:0004042)
0.2 0.6 GO:0004475 mannose-1-phosphate guanylyltransferase activity(GO:0004475)
0.2 20.4 GO:0009055 electron carrier activity(GO:0009055)
0.1 1.3 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.1 5.0 GO:0005179 hormone activity(GO:0005179)
0.1 0.4 GO:0004424 imidazoleglycerol-phosphate dehydratase activity(GO:0004424)
0.1 0.7 GO:0000048 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.1 0.7 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.1 4.1 GO:0008378 galactosyltransferase activity(GO:0008378)
0.1 0.5 GO:0016433 rRNA (adenine) methyltransferase activity(GO:0016433)
0.1 0.4 GO:0008821 crossover junction endodeoxyribonuclease activity(GO:0008821)
0.1 1.2 GO:0035673 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.1 1.5 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.1 0.4 GO:0005094 Rho GDP-dissociation inhibitor activity(GO:0005094)
0.1 5.0 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.1 0.6 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.1 1.2 GO:0009378 four-way junction helicase activity(GO:0009378)
0.1 0.5 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.1 1.1 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.1 0.9 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.1 1.6 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.1 0.7 GO:0048487 beta-tubulin binding(GO:0048487)
0.1 1.3 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.1 0.9 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.1 0.5 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.1 0.4 GO:0042895 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.1 1.0 GO:0016774 phosphotransferase activity, carboxyl group as acceptor(GO:0016774)
0.1 3.6 GO:0008171 O-methyltransferase activity(GO:0008171)
0.1 11.7 GO:0008017 microtubule binding(GO:0008017)
0.1 2.5 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.1 0.8 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 2.6 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.1 1.1 GO:0003688 DNA replication origin binding(GO:0003688)
0.1 1.4 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.1 2.4 GO:0018024 histone-lysine N-methyltransferase activity(GO:0018024)
0.1 0.5 GO:0008381 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 2.0 GO:0004713 protein tyrosine kinase activity(GO:0004713)
0.1 0.8 GO:0016308 phosphatidylinositol phosphate kinase activity(GO:0016307) 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.1 0.2 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.1 0.4 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.1 0.2 GO:0047150 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.1 0.8 GO:0000175 3'-5'-exoribonuclease activity(GO:0000175)
0.1 1.3 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.1 5.6 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 7.7 GO:0005507 copper ion binding(GO:0005507)
0.0 0.8 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.0 0.4 GO:0005536 glucokinase activity(GO:0004340) glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.0 0.8 GO:0070628 proteasome binding(GO:0070628)
0.0 0.6 GO:0030674 protein binding, bridging(GO:0030674)
0.0 0.5 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.0 0.3 GO:0004792 thiosulfate sulfurtransferase activity(GO:0004792)
0.0 0.7 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.9 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.8 GO:0030599 pectinesterase activity(GO:0030599)
0.0 0.9 GO:0080032 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.0 1.1 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.0 2.0 GO:0070001 aspartic-type peptidase activity(GO:0070001)
0.0 1.8 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 0.6 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 3.4 GO:0008757 S-adenosylmethionine-dependent methyltransferase activity(GO:0008757)
0.0 0.3 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.0 0.6 GO:0005249 voltage-gated potassium channel activity(GO:0005249)
0.0 0.2 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 0.1 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.0 1.2 GO:0003678 DNA helicase activity(GO:0003678)
0.0 0.3 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.0 4.1 GO:0043531 ADP binding(GO:0043531)
0.0 0.1 GO:0070182 DNA polymerase binding(GO:0070182)
0.0 0.1 GO:0016985 mannan endo-1,4-beta-mannosidase activity(GO:0016985)
0.0 0.9 GO:0008408 3'-5' exonuclease activity(GO:0008408)
0.0 0.9 GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor(GO:0016671)
0.0 1.4 GO:0004364 glutathione transferase activity(GO:0004364)
0.0 0.4 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.0 1.2 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.0 1.2 GO:0015299 solute:proton antiporter activity(GO:0015299)
0.0 5.0 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.2 GO:0097599 endo-1,4-beta-xylanase activity(GO:0031176) xylanase activity(GO:0097599)
0.0 1.6 GO:0015171 amino acid transmembrane transporter activity(GO:0015171)
0.0 0.7 GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives(GO:0016857)
0.0 0.3 GO:0000990 transcription factor activity, core RNA polymerase binding(GO:0000990)
0.0 1.0 GO:0001871 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.0 0.3 GO:0031420 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 1.0 GO:0043621 protein self-association(GO:0043621)
0.0 0.1 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 0.2 GO:0008079 translation release factor activity(GO:0003747) translation termination factor activity(GO:0008079)
0.0 0.3 GO:0008375 acetylglucosaminyltransferase activity(GO:0008375)
0.0 0.1 GO:0032036 myosin tail binding(GO:0032029) myosin heavy chain binding(GO:0032036) myosin XI tail binding(GO:0080115)
0.0 0.7 GO:0016763 transferase activity, transferring pentosyl groups(GO:0016763)
0.0 0.4 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 0.1 GO:0001671 ATPase activator activity(GO:0001671)
0.0 0.4 GO:0070566 adenylyltransferase activity(GO:0070566)
0.0 0.7 GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706)
0.0 0.9 GO:0004601 peroxidase activity(GO:0004601)
0.0 0.2 GO:0016405 CoA-ligase activity(GO:0016405)
0.0 0.1 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.0 PID P53 REGULATION PATHWAY p53 pathway
0.3 2.0 PID HES HEY PATHWAY Notch-mediated HES/HEY network
0.3 0.8 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway
0.2 1.5 PID AP1 PATHWAY AP-1 transcription factor network
0.2 1.1 PID CMYB PATHWAY C-MYB transcription factor network
0.1 1.2 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.1 1.0 PID MYC ACTIV PATHWAY Validated targets of C-MYC transcriptional activation
0.1 0.3 PID AMB2 NEUTROPHILS PATHWAY amb2 Integrin signaling
0.1 0.7 SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES Genes related to the insulin receptor pathway
0.0 0.4 PID FANCONI PATHWAY Fanconi anemia pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 2.5 REACTOME REGULATION OF INSULIN SECRETION Genes involved in Regulation of Insulin Secretion
0.4 1.2 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.3 1.0 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.3 1.0 REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC
0.3 2.2 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.3 0.9 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.2 1.1 REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES Genes involved in Antiviral mechanism by IFN-stimulated genes
0.1 0.6 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.0 0.0 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)