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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G31060
Z-value: 0.96
Transcription factors associated with AT4G31060
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G31060
|
AT4G31060 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT4G31060 | arTal_v1_Chr4_+_15116148_15116148 | 0.72 | 1.8e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 7.06 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 6.10 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 5.45 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 5.32 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr1_+_27338034_27338062 Show fit | 5.16 |
AT1G72600.2
AT1G72600.1 |
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr2_+_2763449_2763513 Show fit | 4.65 |
AT2G06850.1
AT2G06850.2 |
xyloglucan endotransglucosylase/hydrolase 4 |
|
| arTal_v1_Chr2_+_17592038_17592038 Show fit | 4.57 |
AT2G42220.1
|
Rhodanese/Cell cycle control phosphatase superfamily protein |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 4.56 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 4.42 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 4.37 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G31060
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 31.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 12.5 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.3 | 11.4 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.5 | 10.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.3 | 10.0 | GO:0009825 | multidimensional cell growth(GO:0009825) |
| 0.5 | 8.3 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.4 | 8.0 | GO:0010207 | photosystem II assembly(GO:0010207) |
| 0.9 | 7.3 | GO:0043489 | RNA stabilization(GO:0043489) |
| 0.1 | 7.2 | GO:0071383 | brassinosteroid mediated signaling pathway(GO:0009742) steroid hormone mediated signaling pathway(GO:0043401) cellular response to steroid hormone stimulus(GO:0071383) |
| 0.3 | 7.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 70.1 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 39.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 32.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 28.1 | GO:0055035 | plastid thylakoid membrane(GO:0055035) |
| 0.5 | 22.1 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 21.6 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 18.2 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 9.4 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.2 | 9.0 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 7.9 | GO:0009579 | thylakoid(GO:0009579) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 23.8 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.2 | 20.4 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.3 | 19.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.4 | 11.9 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 11.7 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.2 | 9.6 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 0.2 | 9.3 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.4 | 8.9 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.3 | 8.4 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 7.7 | GO:0005507 | copper ion binding(GO:0005507) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.0 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.3 | 2.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 1.5 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 1.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 1.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 1.0 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.3 | 0.8 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.1 | 0.7 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.0 | 0.4 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.3 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 2.5 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.3 | 2.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 1.2 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 1.1 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.3 | 1.0 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.3 | 1.0 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.3 | 0.9 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.1 | 0.6 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.0 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |