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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G29230
Z-value: 1.30
Transcription factors associated with AT4G29230
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G29230
|
AT4G29230 | NAC domain containing protein 75 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC075 | arTal_v1_Chr4_+_14409772_14409871 | -0.77 | 1.7e-06 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 8.07 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 7.35 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 6.38 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 6.23 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 5.78 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 5.53 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 5.53 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr3_+_17228642_17228642 Show fit | 5.12 |
AT3G46780.1
|
plastid transcriptionally active 16 |
|
| arTal_v1_Chr5_-_6222300_6222300 Show fit | 5.11 |
AT5G18660.1
|
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr5_+_4758921_4758921 Show fit | 4.93 |
AT5G14740.9
|
carbonic anhydrase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G29230
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 22.7 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.2 | 14.9 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 2.4 | 14.6 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.2 | 13.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 13.6 | GO:0019762 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.7 | 12.4 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.7 | 10.7 | GO:0030497 | fatty acid elongation(GO:0030497) |
| 0.7 | 10.5 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.5 | 9.5 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.2 | 8.8 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 48.0 | GO:0048046 | apoplast(GO:0048046) |
| 0.4 | 29.4 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.1 | 25.8 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.1 | 24.0 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 17.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 16.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.4 | 15.9 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 13.3 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.5 | 9.1 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.2 | 8.8 | GO:0005875 | microtubule associated complex(GO:0005875) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 27.1 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 24.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.9 | 22.4 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.6 | 14.6 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 1.8 | 14.5 | GO:0019137 | thioglucosidase activity(GO:0019137) |
| 0.0 | 12.1 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.3 | 10.5 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 9.7 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.2 | 9.2 | GO:0005262 | calcium channel activity(GO:0005262) |
| 0.1 | 9.2 | GO:0004650 | polygalacturonase activity(GO:0004650) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 4.0 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.3 | 1.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.3 | 0.8 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.7 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.2 | 0.6 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
| 0.2 | 0.6 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 0.5 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.1 | 0.4 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.7 | 10.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.4 | 8.1 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.7 | 2.7 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.3 | 2.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 2.1 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.3 | 1.4 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
| 0.3 | 1.3 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.4 | 1.1 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.4 | 1.1 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.3 | 0.9 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |