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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G28500

Z-value: 0.57

Transcription factors associated with AT4G28500

Gene Symbol Gene ID Gene Info
AT4G28500
AT4G28500 NAC domain containing protein 73

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
NAC073arTal_v1_Chr4_+_14082660_140826600.688.0e-05Click!

Activity profile of AT4G28500 motif

Sorted Z-values of AT4G28500 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_10371675 2.65 AT1G29660.1
AT1G29660
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_+_12660687 2.33 AT4G24510.1
CER2
HXXXD-type acyl-transferase family protein
Chr5_+_21020014 2.27 AT5G51750.1
SBT1.3
subtilase 1.3
Chr1_-_21614169 2.23 AT1G58270.1
ZW9
TRAF-like family protein
Chr4_+_16810482 2.07 AT4G35350.2
AT4G35350.1
XCP1
xylem cysteine peptidase 1
Chr5_-_6842946 1.88 AT5G20270.1
HHP1
heptahelical transmembrane protein1
Chr1_-_30041952 1.74 AT1G79850.1
RPS17
ribosomal protein S17
Chr1_-_3518035 1.73 AT1G10640.1
AT1G10640
Pectin lyase-like superfamily protein
Chr3_-_7187521 1.71 AT3G20570.1
ENODL9
early nodulin-like protein 9
Chr2_-_7727404 1.70 AT2G17780.2
AT2G17780.4
AT2G17780.5
AT2G17780.8
AT2G17780.10
AT2G17780.9
AT2G17780.1
AT2G17780.6
AT2G17780.3
AT2G17780.7
MCA2
PLAC8 family protein
Chr2_+_18286321 1.66 AT2G44230.1
AT2G44230
hypothetical protein (DUF946)
Chr5_-_17581275 1.64 AT5G43750.1
PnsB5
NAD(P)H dehydrogenase 18
Chr5_+_19825078 1.57 AT5G48900.1
AT5G48900
Pectin lyase-like superfamily protein
Chr1_+_9259750 1.56 AT1G26770.2
EXPA10
expansin A10
Chr1_+_9259432 1.53 AT1G26770.1
EXPA10
expansin A10
Chr1_+_23144385 1.44 AT1G62520.1
AT1G62520
sulfated surface-like glycoprotein
Chr3_+_10505711 1.40 AT3G28180.1
CSLC04
Cellulose-synthase-like C4
Chr1_-_1358547 1.39 AT1G04820.1
TUA4
tubulin alpha-4 chain
Chr1_-_6940832 1.36 AT1G20010.1
TUB5
tubulin beta-5 chain
Chr3_-_9255083 1.32 AT3G25500.1
AFH1
formin homology 1
Chr4_-_17486358 1.29 AT4G37110.4
AT4G37110.3
AT4G37110.1
AT4G37110.2
AT4G37110
Zinc-finger domain of monoamine-oxidase A repressor R1
Chr5_-_3709403 1.28 AT5G11550.1
AT5G11550
ARM repeat superfamily protein
Chr5_-_5833989 1.22 AT5G17700.2
AT5G17700.1
AT5G17700.3
AT5G17700
MATE efflux family protein
Chr4_-_10304612 1.21 AT4G18740.3
AT4G18740.4
AT4G18740.1
AT4G18740.2
AT4G18740
Rho termination factor
Chr2_+_15906555 1.19 AT2G38010.2
AT2G38010.3
AT2G38010
Neutral/alkaline non-lysosomal ceramidase
Chr5_-_22988092 1.14 AT5G56850.3
AT5G56850.1
AT5G56850.2
AT5G56850.4
AT5G56850
hypothetical protein
Chr2_+_15906862 1.14 AT2G38010.1
AT2G38010
Neutral/alkaline non-lysosomal ceramidase
Chr1_+_564018 1.11 AT1G02640.1
BXL2
beta-xylosidase 2
Chr5_+_25191860 1.08 AT5G62720.2
AT5G62720
Integral membrane HPP family protein
Chr5_+_25191402 1.07 AT5G62720.1
AT5G62720
Integral membrane HPP family protein
Chr3_-_21805335 1.06 AT3G59010.1
PME61
pectin methylesterase 61
Chr2_-_12355480 1.06 AT2G28790.1
AT2G28790.2
AT2G28790
Pathogenesis-related thaumatin superfamily protein
Chr2_+_16869189 1.03 AT2G40400.1
AT2G40400.2
AT2G40400.3
AT2G40400
DUF399 family protein, putative (DUF399 and DUF3411)
Chr3_-_3003454 1.01 AT3G09780.1
CCR1
CRINKLY4 related 1
Chr3_-_18892508 1.01 AT3G50820.1
PSBO2
photosystem II subunit O-2
Chr5_-_22987509 1.01 AT5G56850.6
AT5G56850.7
AT5G56850
hypothetical protein
Chr3_-_4698141 0.98 AT3G14170.2
AT3G14170.1
AT3G14170
hypothetical protein (DUF936)
Chr1_+_26705420 0.98 AT1G70820.1
AT1G70820.2
AT1G70820
phosphoglucomutase, putative / glucose phosphomutase
Chr4_+_10148951 0.97 AT4G18370.1
AT4G18370.2
AT4G18370.3
DEG5
DEGP protease 5
Chr1_+_4157654 0.96 AT1G12244.1
AT1G12244
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr5_+_24667873 0.95 AT5G61350.1
AT5G61350
Protein kinase superfamily protein
Chr4_+_1440146 0.93 AT4G03280.1
AT4G03280.2
PETC
photosynthetic electron transfer C
Chr1_-_6038692 0.93 AT1G17560.2
AT1G17560.1
HLL
Ribosomal protein L14p/L23e family protein
Chr5_+_1785845 0.93 AT5G05940.2
AT5G05940.1
ROPGEF5
ROP guanine nucleotide exchange factor 5
Chr5_+_7168106 0.92 AT5G21100.1
AT5G21100
Plant L-ascorbate oxidase
Chr5_+_19031301 0.90 AT5G46880.1
AT5G46880.3
HB-7
homeobox-7
Chr3_-_5485187 0.90 AT3G16180.1
AT3G16180
Major facilitator superfamily protein
Chr5_+_98533 0.89 AT5G01240.2
LAX1
like AUXIN RESISTANT 1
Chr5_-_22987029 0.88 AT5G56850.8
AT5G56850
hypothetical protein
Chr1_-_21199126 0.88 AT1G56580.1
SVB
plant/protein (Protein of unknown function, DUF538)
Chr2_-_16346769 0.87 AT2G39180.1
CCR2
CRINKLY4 related 2
Chr5_+_24128491 0.86 AT5G59920.1
ULI3
Cysteine/Histidine-rich C1 domain family protein
Chr5_+_97536 0.86 AT5G01240.1
LAX1
like AUXIN RESISTANT 1
Chr5_-_22987194 0.85 AT5G56850.5
AT5G56850
hypothetical protein
Chr5_+_26568572 0.84 AT5G66570.1
PSBO1
PS II oxygen-evolving complex 1
Chr2_-_15084559 0.84 AT2G35930.1
PUB23
plant U-box 23
Chr1_-_28407182 0.83 AT1G75640.1
AT1G75640
Leucine-rich receptor-like protein kinase family protein
Chr5_+_5033933 0.83 AT5G15510.3
AT5G15510.1
AT5G15510.4
AT5G15510.2
AT5G15510
TPX2 (targeting protein for Xklp2) protein family
Chr5_-_2845530 0.80 AT5G08720.1
AT5G08720
polyketide cyclase/dehydrase/lipid transporter
Chr1_+_9476197 0.80 AT1G27285.1
AT1G27285

Chr4_-_11185844 0.80 AT4G20900.2
AT4G20900.1
MS5
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_6363042 0.79 AT1G18485.1
AT1G18485
Pentatricopeptide repeat (PPR) superfamily protein
Chr4_+_6234671 0.79 AT4G09950.1
AT4G09950
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_339838 0.79 AT5G01881.1
AT5G01881
transmembrane protein
Chr5_-_3517035 0.76 AT5G11070.1
AT5G11070
hypothetical protein
Chr5_-_5365391 0.74 AT5G16400.1
TRXF2
thioredoxin F2
Chr5_-_21207697 0.72 AT5G52220.1
AT5G52220.2
AT5G52220
chromosome transmission fidelity-like protein
Chr1_-_711857 0.72 AT1G03055.1
AT1G03055.2
D27
beta-carotene isomerase D27-like protein
Chr3_+_16283833 0.71 AT3G44730.2
AT3G44730.3
KP1
kinesin-like protein 1
Chr3_+_23054004 0.71 AT3G62300.2
AT3G62300.1
DUF7
agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7)
Chr3_+_18635758 0.70 AT3G50270.1
AT3G50270
HXXXD-type acyl-transferase family protein
Chr4_-_16216297 0.70 AT4G33810.4
AT4G33810.3
AT4G33810.2
AT4G33810
Glycosyl hydrolase superfamily protein
Chr4_-_9643738 0.68 AT4G17160.1
RABB1a
RAB GTPase homolog B1A
Chr3_-_8865239 0.68 AT3G24420.1
AT3G24420
alpha/beta-Hydrolases superfamily protein
Chr1_+_26996805 0.68 AT1G71790.1
CPB
Subunits of heterodimeric actin filament capping protein Capz superfamily
Chr1_-_26790262 0.66 AT1G71015.2
AT1G71015.1
AT1G71015
plastid movement impaired protein
Chr5_+_16161449 0.65 AT5G40390.1
SIP1
Raffinose synthase family protein
Chr1_-_19458069 0.65 AT1G52240.1
ROPGEF11
rop guanine nucleotide exchange factor-like protein
Chr4_+_6696712 0.64 AT4G10910.1
AT4G10910
hypothetical protein
Chr5_+_19030844 0.64 AT5G46880.2
HB-7
homeobox-7
Chr3_+_5708826 0.63 AT3G16780.1
AT3G16780
Ribosomal protein L19e family protein
Chr1_+_7231981 0.63 AT1G20810.1
AT1G20810.2
AT1G20810
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Chr4_-_12533924 0.62 AT4G24140.1
AT4G24140
alpha/beta-Hydrolases superfamily protein
Chr2_-_14716634 0.62 AT2G34880.1
MEE27
Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
Chr3_+_16285741 0.61 AT3G44730.4
KP1
kinesin-like protein 1
Chr4_+_6235173 0.60 AT4G09950.2
AT4G09950
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_16284624 0.59 AT3G44730.1
KP1
kinesin-like protein 1
Chr1_-_30027277 0.59 AT1G79820.2
AT1G79820.1
AT1G79820.4
SGB1
Major facilitator superfamily protein
Chr3_+_6496135 0.58 AT3G18840.2
AT3G18840.3
AT3G18840
LOW protein: PPR containing-like protein
Chr1_+_26216009 0.58 AT1G69690.1
TCP15
TCP family transcription factor
Chr1_+_23337167 0.58 AT1G62990.1
KNAT7
homeobox knotted-like protein
Chr3_+_3847743 0.57 AT3G12080.1
AT3G12080.2
emb2738
GTP-binding family protein
Chr4_-_9462253 0.57 AT4G16810.1
AT4G16810
VEFS-Box of polycomb protein
Chr4_-_17197247 0.56 AT4G36390.1
AT4G36390
Methylthiotransferase
Chr4_-_717579 0.55 AT4G01680.3
AT4G01680.1
MYB55
myb domain protein 55
Chr3_+_21738883 0.55 AT3G58780.5
SHP1
K-box region and MADS-box transcription factor family protein
Chr1_-_29084285 0.55 AT1G77390.1
CYCA1%3B2
CYCLIN A1;2
Chr3_+_21738460 0.55 AT3G58780.2
SHP1
K-box region and MADS-box transcription factor family protein
Chr5_-_19749061 0.55 AT5G48690.2
AT5G48690.1
AT5G48690.3
AT5G48690
ubiquitin-associated (UBA)/TS-N domain protein
Chr5_-_17873698 0.54 AT5G44360.1
AT5G44360.2
AT5G44360
FAD-binding Berberine family protein
Chr1_-_17035105 0.54 AT1G45063.1
AT1G45063.2
AT1G45063
copper ion binding / electron carrier protein
Chr3_+_9756007 0.53 AT3G26570.1
AT3G26570.2
PHT2%3B1
phosphate transporter 2;1
Chr5_-_17941646 0.53 AT5G44540.1
AT5G44540
Tapetum specific protein TAP35/TAP44
Chr4_-_8402961 0.53 AT4G14650.1
AT4G14650
hypothetical protein
Chr3_+_8603212 0.53 AT3G23820.1
GAE6
UDP-D-glucuronate 4-epimerase 6
Chr5_-_15201168 0.52 AT5G38100.4
AT5G38100.1
AT5G38100.2
AT5G38100
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_-_16215792 0.52 AT4G33810.5
AT4G33810
Glycosyl hydrolase superfamily protein
Chr4_+_2417800 0.52 AT4G04750.3
AT4G04750.2
AT4G04750.1
AT4G04750
Major facilitator superfamily protein
Chr4_-_16215594 0.52 AT4G33810.1
AT4G33810
Glycosyl hydrolase superfamily protein
Chr1_-_18061257 0.52 AT1G48830.2
AT1G48830.1
AT1G48830
Ribosomal protein S7e family protein
Chr1_+_22275484 0.51 AT1G60460.3
AT1G60460.1
AT1G60460.2
AT1G60460
hypothetical protein
Chr1_+_21167565 0.51 AT1G56510.1
WRR4
Disease resistance protein (TIR-NBS-LRR class)
Chr5_+_18905258 0.51 AT5G46590.1
AT5G46590.2
NAC096
NAC domain containing protein 96
Chr4_+_5712328 0.50 AT4G08910.1
AT4G08910
homeobox protein
Chr4_-_14257965 0.50 AT4G28890.1
AT4G28890
RING/U-box superfamily protein
Chr1_-_9150250 0.49 AT1G26450.1
AT1G26450
Carbohydrate-binding X8 domain superfamily protein
Chr3_+_22043919 0.49 AT3G59680.2
AT3G59680.1
AT3G59680
Serine/Threonine-kinase
Chr1_+_22277249 0.48 AT1G60460.5
AT1G60460
hypothetical protein
Chr5_-_26970668 0.48 AT5G67640.1
AT5G67640
hypothetical protein
Chr1_+_22276593 0.48 AT1G60460.4
AT1G60460
hypothetical protein
Chr1_-_30027634 0.48 AT1G79820.3
SGB1
Major facilitator superfamily protein
Chr1_+_1669350 0.48 AT1G05590.1
AT1G05590.3
AT1G05590.2
HEXO2
beta-hexosaminidase 2
Chr3_+_21738160 0.47 AT3G58780.4
AT3G58780.1
AT3G58780.3
SHP1
K-box region and MADS-box transcription factor family protein
Chr5_+_19149938 0.47 AT5G47150.1
AT5G47150
YDG/SRA domain-containing protein
Chr1_+_28247641 0.47 AT1G75260.1
AT1G75260
oxidoreductases, acting on NADH or NADPH
Chr5_-_18032293 0.47 AT5G44690.1
AT5G44690
RING finger PFF0165c-like protein
Chr1_-_30025658 0.47 AT1G79820.5
SGB1
Major facilitator superfamily protein
Chr4_-_8390833 0.46 AT4G14620.1
AT4G14620
hypothetical protein (DUF506)
Chr4_+_7576642 0.45 AT4G12950.1
AT4G12950
Fasciclin-like arabinogalactan family protein
Chr4_+_15440971 0.45 AT4G31910.1
BAT1
HXXXD-type acyl-transferase family protein
Chr5_+_17154718 0.45 AT5G42780.1
HB27
homeobox protein 27
Chr3_-_21564067 0.45 AT3G58210.1
AT3G58210
TRAF-like family protein
Chr4_+_16971221 0.44 AT4G35820.1
AT4G35820
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_5354314 0.44 AT1G15560.1
AT1G15560

Chr5_-_23691216 0.44 AT5G58610.8
AT5G58610
PHD finger transcription factor
Chr1_-_21487839 0.43 AT1G58050.1
AT1G58050
RNA helicase family protein
Chr1_+_24637196 0.43 AT1G66160.2
AT1G66160.1
CMPG1
CYS, MET, PRO, and GLY protein 1
Chr5_-_10268620 0.43 AT5G28285.1
AT5G28285

Chr1_-_1934103 0.42 AT1G06340.1
AT1G06340
Plant Tudor-like protein
Chr4_-_717415 0.42 AT4G01680.2
MYB55
myb domain protein 55
Chr3_+_18620450 0.42 AT3G50230.2
AT3G50230.1
AT3G50230
Leucine-rich repeat protein kinase family protein
Chr4_-_950431 0.41 AT4G02140.1
AT4G02140
hypothetical protein
Chr3_+_7358840 0.41 AT3G20990.1
AT3G20990

Chr2_-_19266446 0.41 AT2G46880.1
AT2G46880.2
PAP14
purple acid phosphatase 14
Chr5_-_3980021 0.41 AT5G12300.1
AT5G12300
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr1_-_28625408 0.41 AT1G76290.1
AT1G76290
AMP-dependent synthetase and ligase family protein
Chr2_-_12722463 0.41 AT2G29790.2
AT2G29790.3
AT2G29790.1
AT2G29790
maternally expressed family protein
Chr2_+_18283789 0.41 AT2G44220.1
AT2G44220
NEP-interacting protein (DUF239)
Chr4_-_7723989 0.40 AT4G13260.3
AT4G13260.2
AT4G13260.1
YUC2
Flavin-binding monooxygenase family protein
Chr1_+_26759834 0.40 AT1G70970.1
AT1G70970
F-box and associated interaction domains-containing protein
Chr1_+_27076020 0.39 AT1G71930.1
VND7
vascular related NAC-domain protein 7
Chr5_+_5403069 0.39 AT5G16540.3
AT5G16540.4
AT5G16540.1
AT5G16540.2
ZFN3
zinc finger nuclease 3
Chr3_-_16359983 0.39 AT3G44810.1
AT3G44810
F-box family protein
Chr2_+_450379 0.39 AT2G01960.1
TET14
tetraspanin14
Chr5_+_6776073 0.39 AT5G20060.1
AT5G20060.2
AT5G20060.4
AT5G20060.3
AT5G20060
alpha/beta-Hydrolases superfamily protein
Chr5_-_23691394 0.38 AT5G58610.4
AT5G58610.2
AT5G58610.3
AT5G58610.10
AT5G58610
PHD finger transcription factor
Chr5_-_23855499 0.38 AT5G59090.1
SBT4.12
subtilase 4.12
Chr5_-_18308303 0.38 AT5G45230.1
AT5G45230
Disease resistance protein (TIR-NBS-LRR class) family
Chr5_-_15200868 0.38 AT5G38100.3
AT5G38100
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_+_1798155 0.38 AT2G05060.1
AT2G05060
Protein kinase superfamily protein
Chr3_+_5748497 0.38 AT3G16850.1
AT3G16850
Pectin lyase-like superfamily protein
Chr3_-_16726116 0.37 AT3G45570.1
AT3G45570
RING/U-box protein with C6HC-type zinc finger domain-containing protein
Chr5_+_25236945 0.37 AT5G62880.2
AT5G62880.1
RAC10
RAC-like 10
Chr5_-_23855275 0.37 AT5G59090.2
AT5G59090.3
SBT4.12
subtilase 4.12
Chr5_-_23691053 0.37 AT5G58610.5
AT5G58610.6
AT5G58610.1
AT5G58610.7
AT5G58610.9
AT5G58610.11
AT5G58610
PHD finger transcription factor
Chr5_+_7753222 0.36 AT5G23100.1
AT5G23100
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr5_-_5427472 0.36 AT5G16580.1
BGLU2
beta glucosidase 2
Chr2_-_8045008 0.36 AT2G18540.1
AT2G18540.2
AT2G18540
RmlC-like cupins superfamily protein
Chr1_+_8401808 0.36 AT1G23760.1
JP630
BURP domain-containing protein
Chr5_+_13905836 0.35 AT5G35736.1
AT5G35736

Chr5_+_195452 0.35 AT5G01490.2
AT5G01490.1
CAX4
cation exchanger 4
Chr2_-_17469786 0.35 AT2G41860.2
CPK14
calcium-dependent protein kinase 14
Chr2_+_15382661 0.35 AT2G36695.1
AT2G36695
hypothetical protein
Chr4_-_3816028 0.35 AT4G06648.1
AT4G06648

Chr4_+_10564159 0.34 AT4G19360.1
AT4G19360.2
AT4G19360
SCD6 protein-like protein
Chr1_-_2551544 0.34 AT1G08135.1
CHX6B
cation/H+ exchanger 6B
Chr2_-_19294375 0.34 AT2G46960.2
AT2G46960.1
CYP709B1
cytochrome P450, family 709, subfamily B, polypeptide 1
Chr5_-_1467161 0.34 AT5G04970.1
AT5G04970
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_+_27074702 0.34 AT1G71930.2
VND7
vascular related NAC-domain protein 7
Chr3_-_12600432 0.33 AT3G30842.1
ABCG38
pleiotropic drug resistance 10
Chr2_-_17470157 0.33 AT2G41860.1
CPK14
calcium-dependent protein kinase 14
Chr5_+_24270808 0.33 AT5G60320.1
AT5G60320
Concanavalin A-like lectin protein kinase family protein
Chr5_+_694783 0.33 AT5G02970.1
AT5G02970
alpha/beta-Hydrolases superfamily protein
Chr2_+_13508493 0.33 AT2G31760.1
ARI10
RING/U-box superfamily protein
Chr3_+_17606359 0.33 AT3G47750.1
ABCA4
ATP binding cassette subfamily A4
Chr3_-_1435526 0.33 AT3G05130.1
AT3G05130
paramyosin-like protein
Chr4_-_15341955 0.32 AT4G31680.2
AT4G31680.1
AT4G31680
Transcriptional factor B3 family protein
Chr3_+_6516891 0.32 AT3G18900.2
AT3G18900.1
AT3G18900.3
AT3G18900.4
AT3G18900.5
AT3G18900
ternary complex factor MIP1 leucine-zipper protein
Chr3_-_16999992 0.32 AT3G46260.1
AT3G46260
kinase-like protein
Chr5_-_20009038 0.32 AT5G49340.1
TBL4
TRICHOME BIREFRINGENCE-LIKE 4
Chr1_-_4480325 0.32 AT1G13140.1
AT1G13140.2
CYP86C3
cytochrome P450, family 86, subfamily C, polypeptide 3
Chr5_+_257306 0.32 AT5G01690.1
CHX27
cation/H+ exchanger 27
Chr4_+_6483867 0.32 AT4G10490.1
AT4G10490
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_1448448 0.31 AT1G05040.2
AT1G05040.1
AT1G05040
UBA-like domain protein
Chr5_+_8096256 0.31 AT5G23970.1
AT5G23970
HXXXD-type acyl-transferase family protein
Chr1_-_22354517 0.31 AT1G60700.2
AT1G60700.1
AT1G60700
SMAD/FHA domain-containing protein
Chr3_+_5480416 0.31 AT3G16175.1
AT3G16175
Thioesterase superfamily protein
Chr1_-_20250310 0.31 AT1G54220.2
AT1G54220.1
AT1G54220
Dihydrolipoamide acetyltransferase, long form protein
Chr3_+_6707133 0.31 AT3G19360.1
AT3G19360.2
AT3G19360
Zinc finger (CCCH-type) family protein
Chr5_+_10188586 0.30 AT5G28210.1
AT5G28210
mRNA capping enzyme family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G28500

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0071258 cellular response to gravity(GO:0071258)
0.4 1.7 GO:0070509 calcium ion import(GO:0070509)
0.4 2.0 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.4 1.8 GO:0042549 photosystem II stabilization(GO:0042549)
0.3 0.9 GO:0050687 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.3 2.1 GO:0010623 programmed cell death involved in cell development(GO:0010623)
0.3 0.9 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.2 0.7 GO:0019594 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.2 0.7 GO:1901334 lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601)
0.2 0.8 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.2 0.5 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.2 3.1 GO:0006949 syncytium formation(GO:0006949)
0.2 0.5 GO:0015812 gamma-aminobutyric acid transport(GO:0015812)
0.1 1.1 GO:0031222 arabinan catabolic process(GO:0031222)
0.1 1.7 GO:0032544 plastid translation(GO:0032544)
0.1 0.5 GO:0019586 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.1 1.0 GO:0034471 rRNA 5'-end processing(GO:0000967) ncRNA 5'-end processing(GO:0034471)
0.1 2.3 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.1 0.7 GO:0090059 protoxylem development(GO:0090059)
0.1 1.5 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.1 1.7 GO:0048829 root cap development(GO:0048829)
0.1 0.9 GO:0010196 nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066)
0.1 0.4 GO:2001009 regulation of plant-type cell wall cellulose biosynthetic process(GO:2001009)
0.1 0.4 GO:0071366 cellular response to indolebutyric acid stimulus(GO:0071366)
0.1 1.0 GO:0010206 photosystem II repair(GO:0010206)
0.1 1.2 GO:0006353 DNA-templated transcription, termination(GO:0006353)
0.1 0.3 GO:0031468 nuclear envelope reassembly(GO:0031468)
0.1 0.2 GO:1990532 stress response to nickel ion(GO:1990532)
0.1 0.3 GO:0006370 7-methylguanosine mRNA capping(GO:0006370)
0.1 0.6 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.1 0.9 GO:0080060 integument development(GO:0080060)
0.0 0.6 GO:0080086 stamen filament development(GO:0080086)
0.0 0.2 GO:0046416 D-amino acid metabolic process(GO:0046416)
0.0 0.6 GO:0042793 transcription from plastid promoter(GO:0042793)
0.0 0.2 GO:0010253 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.0 0.7 GO:0007064 mitotic sister chromatid cohesion(GO:0007064)
0.0 0.2 GO:1903175 fatty alcohol biosynthetic process(GO:1903175)
0.0 1.9 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.0 0.5 GO:0010158 abaxial cell fate specification(GO:0010158)
0.0 0.5 GO:0034644 cellular response to UV(GO:0034644)
0.0 3.0 GO:0045490 pectin catabolic process(GO:0045490)
0.0 0.6 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 0.8 GO:0009556 microsporogenesis(GO:0009556)
0.0 0.4 GO:0019511 protein hydroxylation(GO:0018126) peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) peptidyl-proline hydroxylation(GO:0019511)
0.0 0.2 GO:0032456 endocytic recycling(GO:0032456)
0.0 1.6 GO:0048481 plant ovule development(GO:0048481)
0.0 0.2 GO:0018026 peptidyl-lysine monomethylation(GO:0018026)
0.0 0.4 GO:0010274 hydrotropism(GO:0010274)
0.0 1.9 GO:0007018 microtubule-based movement(GO:0007018)
0.0 0.3 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 0.1 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.0 0.5 GO:0042726 flavin-containing compound metabolic process(GO:0042726)
0.0 0.3 GO:0034063 stress granule assembly(GO:0034063)
0.0 0.3 GO:0006545 glycine biosynthetic process(GO:0006545)
0.0 0.1 GO:2000068 regulation of defense response to insect(GO:2000068)
0.0 0.1 GO:0032309 icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) icosanoid transport(GO:0071715) fatty acid derivative transport(GO:1901571) arachidonate transport(GO:1903963)
0.0 0.1 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 0.9 GO:0006885 regulation of pH(GO:0006885)
0.0 0.2 GO:0045493 xylan catabolic process(GO:0045493)
0.0 0.9 GO:0010090 trichome morphogenesis(GO:0010090)
0.0 0.1 GO:0009405 pathogenesis(GO:0009405)
0.0 0.9 GO:0010224 response to UV-B(GO:0010224)
0.0 1.0 GO:0010119 regulation of stomatal movement(GO:0010119)
0.0 0.6 GO:0006338 chromatin remodeling(GO:0006338)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0031390 Ctf18 RFC-like complex(GO:0031390)
0.2 1.7 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.2 2.7 GO:0045298 tubulin complex(GO:0045298)
0.1 1.8 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.1 0.3 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.1 1.6 GO:0009543 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.1 0.3 GO:0044545 NSL complex(GO:0044545)
0.0 2.1 GO:0005764 lysosome(GO:0005764)
0.0 0.9 GO:0005762 mitochondrial large ribosomal subunit(GO:0005762)
0.0 0.3 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.0 0.6 GO:0035097 histone methyltransferase complex(GO:0035097)
0.0 0.2 GO:0035619 root hair tip(GO:0035619)
0.0 5.7 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.5 GO:0070069 cytochrome complex(GO:0070069)
0.0 6.2 GO:0048046 apoplast(GO:0048046)
0.0 1.6 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 0.1 GO:0031314 extrinsic component of mitochondrial inner membrane(GO:0031314)
0.0 0.3 GO:0000784 nuclear chromosome, telomeric region(GO:0000784)
0.0 2.3 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.0 3.6 GO:0030312 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 0.2 GO:0005786 signal recognition particle, endoplasmic reticulum targeting(GO:0005786)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.8 GO:0010242 oxygen evolving activity(GO:0010242)
0.3 1.9 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.2 1.3 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.2 0.5 GO:0004563 beta-N-acetylhexosaminidase activity(GO:0004563)
0.2 0.5 GO:0015185 L-alanine transmembrane transporter activity(GO:0015180) gamma-aminobutyric acid transmembrane transporter activity(GO:0015185) alanine transmembrane transporter activity(GO:0022858)
0.1 3.0 GO:0005199 structural constituent of cell wall(GO:0005199)
0.1 1.0 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.1 0.5 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)
0.1 0.3 GO:0004651 mRNA guanylyltransferase activity(GO:0004484) polynucleotide 5'-phosphatase activity(GO:0004651) RNA guanylyltransferase activity(GO:0008192)
0.1 0.5 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.1 1.1 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.1 2.7 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.1 0.2 GO:0004557 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.1 1.6 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.1 0.9 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.1 0.3 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.1 0.4 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.1 1.6 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.1 0.2 GO:0047661 racemase and epimerase activity, acting on amino acids and derivatives(GO:0016855) racemase activity, acting on amino acids and derivatives(GO:0036361) amino-acid racemase activity(GO:0047661)
0.1 0.4 GO:0015369 calcium:proton antiporter activity(GO:0015369)
0.1 0.6 GO:0032453 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.0 1.7 GO:0005262 calcium channel activity(GO:0005262)
0.0 0.2 GO:0042084 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.0 4.2 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.4 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.0 2.2 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.5 GO:0047631 ADP-ribose diphosphatase activity(GO:0047631)
0.0 0.4 GO:0031545 procollagen-proline 4-dioxygenase activity(GO:0004656) procollagen-proline dioxygenase activity(GO:0019798) peptidyl-proline 4-dioxygenase activity(GO:0031545)
0.0 0.2 GO:0030942 endoplasmic reticulum signal peptide binding(GO:0030942)
0.0 0.7 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.0 1.4 GO:0016759 cellulose synthase activity(GO:0016759)
0.0 2.1 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.9 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.0 0.3 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.0 1.9 GO:0003777 microtubule motor activity(GO:0003777)
0.0 3.2 GO:0009055 electron carrier activity(GO:0009055)
0.0 0.4 GO:0019903 protein phosphatase binding(GO:0019903)
0.0 2.0 GO:0015144 carbohydrate transmembrane transporter activity(GO:0015144)
0.0 1.3 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.1 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.0 0.2 GO:0004714 transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.0 0.3 GO:0008139 nuclear localization sequence binding(GO:0008139)
0.0 1.2 GO:0042910 xenobiotic transporter activity(GO:0042910)
0.0 0.6 GO:0031490 chromatin DNA binding(GO:0031490)
0.0 1.6 GO:0038023 signaling receptor activity(GO:0038023)
0.0 0.2 GO:0097599 endo-1,4-beta-xylanase activity(GO:0031176) xylanase activity(GO:0097599)
0.0 0.6 GO:0016782 transferase activity, transferring sulfur-containing groups(GO:0016782)
0.0 0.2 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.0 0.1 GO:0017022 myosin binding(GO:0017022)
0.0 0.6 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.8 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 0.7 GO:0005451 monovalent cation:proton antiporter activity(GO:0005451)
0.0 0.1 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.0 1.2 GO:0051015 actin filament binding(GO:0051015)
0.0 0.1 GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 3.6 GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups(GO:0016747)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 PID HIF1A PATHWAY Hypoxic and oxygen homeostasis regulation of HIF-1-alpha
0.1 0.3 PID AP1 PATHWAY AP-1 transcription factor network
0.0 0.2 PID HDAC CLASSI PATHWAY Signaling events mediated by HDAC Class I

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.9 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.2 0.5 REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha
0.2 0.3 REACTOME G ALPHA I SIGNALLING EVENTS Genes involved in G alpha (i) signalling events
0.1 0.4 REACTOME GLYCOSPHINGOLIPID METABOLISM Genes involved in Glycosphingolipid metabolism
0.1 1.7 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0 0.2 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport