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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G28500
Z-value: 0.57
Transcription factors associated with AT4G28500
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G28500
|
AT4G28500 | NAC domain containing protein 73 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC073 | arTal_v1_Chr4_+_14082660_14082660 | 0.68 | 8.0e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 2.65 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_+_12660687_12660687 Show fit | 2.33 |
AT4G24510.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr5_+_21020014_21020014 Show fit | 2.27 |
AT5G51750.1
|
subtilase 1.3 |
|
| arTal_v1_Chr1_-_21614169_21614169 Show fit | 2.23 |
AT1G58270.1
|
TRAF-like family protein |
|
| arTal_v1_Chr4_+_16810482_16810482 Show fit | 2.07 |
AT4G35350.2
AT4G35350.1 |
xylem cysteine peptidase 1 |
|
| arTal_v1_Chr5_-_6842946_6842946 Show fit | 1.88 |
AT5G20270.1
|
heptahelical transmembrane protein1 |
|
| arTal_v1_Chr1_-_30041952_30041952 Show fit | 1.74 |
AT1G79850.1
|
ribosomal protein S17 |
|
| arTal_v1_Chr1_-_3518035_3518035 Show fit | 1.73 |
AT1G10640.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr3_-_7187521_7187521 Show fit | 1.71 |
AT3G20570.1
|
early nodulin-like protein 9 |
|
| arTal_v1_Chr2_-_7727404_7727503 Show fit | 1.70 |
AT2G17780.2
AT2G17780.4 AT2G17780.5 AT2G17780.8 AT2G17780.10 AT2G17780.9 AT2G17780.1 AT2G17780.6 AT2G17780.3 AT2G17780.7 |
PLAC8 family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G28500
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.1 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 3.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 2.3 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.3 | 2.1 | GO:0010623 | programmed cell death involved in cell development(GO:0010623) |
| 0.4 | 2.0 | GO:0051016 | barbed-end actin filament capping(GO:0051016) |
| 0.0 | 1.9 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.0 | 1.9 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.4 | 1.8 | GO:0042549 | photosystem II stabilization(GO:0042549) |
| 0.4 | 1.7 | GO:0070509 | calcium ion import(GO:0070509) |
| 0.1 | 1.7 | GO:0032544 | plastid translation(GO:0032544) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.2 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 5.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 3.6 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.2 | 2.7 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 2.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 2.1 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 1.8 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.2 | 1.7 | GO:0000312 | plastid small ribosomal subunit(GO:0000312) |
| 0.1 | 1.6 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 1.6 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.0 | 3.6 | GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups(GO:0016747) |
| 0.0 | 3.2 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 3.0 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.1 | 2.7 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.0 | 2.2 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 2.1 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 2.0 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
| 0.3 | 1.9 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
| 0.0 | 1.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 0.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.2 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 1.7 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.2 | 0.5 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.1 | 0.4 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.2 | 0.3 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 0.0 | 0.2 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |