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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G26640
Z-value: 0.83
Transcription factors associated with AT4G26640
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G26640
|
AT4G26640 | WRKY family transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY20 | arTal_v1_Chr4_-_13441884_13441884 | -0.74 | 6.5e-06 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 4.18 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_+_2763449_2763513 Show fit | 3.19 |
AT2G06850.1
AT2G06850.2 |
xyloglucan endotransglucosylase/hydrolase 4 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 3.16 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 3.11 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr5_+_17760865_17760865 Show fit | 3.11 |
AT5G44130.1
|
FASCICLIN-like arabinogalactan protein 13 precursor |
|
| arTal_v1_Chr1_-_59215_59215 Show fit | 2.92 |
AT1G01120.1
|
3-ketoacyl-CoA synthase 1 |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 2.81 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr5_+_152446_152446 Show fit | 2.70 |
AT5G01370.1
|
ALC-interacting protein 1 |
|
| arTal_v1_Chr3_-_3356811_3356811 Show fit | 2.66 |
AT3G10720.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr5_+_4758921_4758921 Show fit | 2.63 |
AT5G14740.9
|
carbonic anhydrase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G26640
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 12.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.5 | 8.6 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.1 | 7.0 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.2 | 6.6 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.2 | 4.6 | GO:0009645 | response to low light intensity stimulus(GO:0009645) |
| 0.1 | 4.5 | GO:0009630 | gravitropism(GO:0009630) |
| 0.1 | 4.4 | GO:0006730 | one-carbon metabolic process(GO:0006730) |
| 0.4 | 4.2 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
| 0.1 | 4.2 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.5 | 4.0 | GO:0043489 | RNA stabilization(GO:0043489) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 18.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 11.6 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 8.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 5.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 5.2 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 4.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 4.7 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.1 | 4.0 | GO:0005811 | lipid particle(GO:0005811) |
| 0.5 | 3.7 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.0 | 2.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 12.2 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 10.0 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 5.8 | GO:0046983 | protein dimerization activity(GO:0046983) |
| 0.2 | 5.7 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.2 | 4.9 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.4 | 4.4 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.2 | 4.4 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.2 | 4.2 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.0 | 4.1 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.0 | 3.5 | GO:0016407 | acetyltransferase activity(GO:0016407) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.8 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.0 | 0.6 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 5.4 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 1.9 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.2 | 1.3 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
| 0.2 | 1.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.8 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.2 | 0.6 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.2 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.0 | 0.2 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |