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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G25490
Z-value: 0.50
Transcription factors associated with AT4G25490
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G25490
|
AT4G25490 | C-repeat/DRE binding factor 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| CBF1 | arTal_v1_Chr4_-_13022996_13022996 | -0.49 | 8.4e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 1.62 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 1.49 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 1.30 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 1.22 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 1.16 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 1.15 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 1.11 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 1.06 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 1.03 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr3_+_23345754_23345754 Show fit | 1.01 |
AT3G63200.1
|
PATATIN-like protein 9 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G25490
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.6 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 5.4 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 5.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 4.4 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.2 | 4.4 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 2.8 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.0 | 2.7 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.3 | 2.3 | GO:0043489 | RNA stabilization(GO:0043489) |
| 0.1 | 2.3 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.7 | 2.0 | GO:0015840 | urea transport(GO:0015840) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 7.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 5.6 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 5.1 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 4.3 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 4.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 3.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 3.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 2.5 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.0 | 2.4 | GO:0099512 | supramolecular fiber(GO:0099512) polymeric cytoskeletal fiber(GO:0099513) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 4.4 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 4.3 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.1 | 4.3 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 3.7 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.0 | 2.9 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 2.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.0 | 2.5 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.0 | 2.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 2.3 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 2.2 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.8 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.5 | PID ATM PATHWAY | ATM pathway |
| 0.1 | 0.3 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.3 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.0 | 0.3 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.2 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.2 | PID IFNG PATHWAY | IFN-gamma pathway |
| 0.0 | 0.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.5 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.7 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
| 0.2 | 0.6 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.1 | 0.5 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.4 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 0.4 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.4 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.1 | 0.3 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.3 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |