GSE43616: Time-course of wild-type Arabidopsis leaf
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT4G25480
|
AT4G25480 | dehydration response element B1A |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
DREB1A | arTal_v1_Chr4_-_13019400_13019400 | -0.03 | 8.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr3_+_15983199_15983199 Show fit | 1.41 |
AT3G44300.1
|
nitrilase 2 |
|
arTal_v1_Chr3_-_162905_162905 Show fit | 1.41 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
arTal_v1_Chr4_+_17855637_17855637 Show fit | 1.32 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
arTal_v1_Chr2_-_18781973_18781973 Show fit | 1.31 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
arTal_v1_Chr1_+_5822309_5822309 Show fit | 1.27 |
AT1G17030.1
|
hypothetical protein |
|
arTal_v1_Chr5_+_1153740_1153740 Show fit | 1.22 |
AT5G04200.1
|
metacaspase 9 |
|
arTal_v1_Chr1_+_10892445_10892445 Show fit | 1.22 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
arTal_v1_Chr5_+_20130752_20130752 Show fit | 1.17 |
AT5G49600.1
|
plant/protein (Protein of unknown function, DUF538) |
|
arTal_v1_Chr1_+_1469541_1469541 Show fit | 1.16 |
AT1G05100.1
|
mitogen-activated protein kinase kinase kinase 18 |
|
arTal_v1_Chr1_-_460696_460831 Show fit | 1.15 |
AT1G02310.1
AT1G02310.2 |
Glycosyl hydrolase superfamily protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.1 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
0.1 | 3.3 | GO:0046283 | anthocyanin-containing compound metabolic process(GO:0046283) |
0.4 | 2.5 | GO:0009413 | response to flooding(GO:0009413) |
0.6 | 2.3 | GO:0042759 | long-chain fatty acid biosynthetic process(GO:0042759) |
0.0 | 2.1 | GO:0009817 | defense response to fungus, incompatible interaction(GO:0009817) |
0.0 | 2.0 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
0.1 | 1.8 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
0.0 | 1.8 | GO:0016579 | protein deubiquitination(GO:0016579) |
0.3 | 1.7 | GO:0042447 | cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447) |
0.2 | 1.6 | GO:0006597 | spermine biosynthetic process(GO:0006597) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.4 | GO:0000325 | plant-type vacuole(GO:0000325) |
0.0 | 2.5 | GO:0000790 | nuclear chromatin(GO:0000790) |
0.1 | 2.4 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
0.0 | 1.4 | GO:0005615 | extracellular space(GO:0005615) |
0.1 | 1.2 | GO:0031970 | organelle envelope lumen(GO:0031970) |
0.1 | 1.2 | GO:0031012 | extracellular matrix(GO:0031012) |
0.1 | 1.1 | GO:0017119 | Golgi transport complex(GO:0017119) |
0.1 | 1.0 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
0.0 | 0.8 | GO:0016607 | nuclear speck(GO:0016607) |
0.0 | 0.7 | GO:0044463 | cell projection part(GO:0044463) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
0.0 | 3.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
0.4 | 2.8 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
0.2 | 2.6 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
0.0 | 2.2 | GO:0051213 | dioxygenase activity(GO:0051213) |
0.0 | 2.2 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
0.1 | 2.1 | GO:0016844 | strictosidine synthase activity(GO:0016844) |
0.0 | 2.0 | GO:0101005 | ubiquitinyl hydrolase activity(GO:0101005) |
0.2 | 1.7 | GO:0019139 | cytokinin dehydrogenase activity(GO:0019139) |
0.1 | 1.7 | GO:0016157 | sucrose synthase activity(GO:0016157) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.4 | PID IL12 2PATHWAY | IL12-mediated signaling events |
0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 0.3 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
0.1 | 0.3 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.1 | 0.2 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
0.0 | 0.1 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
0.0 | 0.1 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
0.0 | 0.1 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.1 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.0 | 0.5 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
0.1 | 0.4 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.1 | 0.3 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.1 | 0.3 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
0.1 | 0.2 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 0.2 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
0.0 | 0.1 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |
0.0 | 0.1 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |