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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G25470
Z-value: 0.74
Transcription factors associated with AT4G25470
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G25470
|
AT4G25470 | C-repeat/DRE binding factor 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| CBF2 | arTal_v1_Chr4_-_13016235_13016235 | -0.29 | 1.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17648945_17649062 Show fit | 1.08 |
AT2G42380.1
AT2G42380.4 AT2G42380.3 AT2G42380.2 AT2G42380.5 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr2_+_17854557_17854557 Show fit | 0.86 |
AT2G42900.1
|
Plant basic secretory protein (BSP) family protein |
|
| arTal_v1_Chr5_+_4087689_4087689 Show fit | 0.84 |
AT5G12940.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr1_-_16917053_16917053 Show fit | 0.79 |
AT1G44800.1
|
nodulin MtN21 /EamA-like transporter family protein |
|
| arTal_v1_Chr2_-_15474717_15474828 Show fit | 0.76 |
AT2G36870.2
AT2G36870.1 |
xyloglucan endotransglucosylase/hydrolase 32 |
|
| arTal_v1_Chr4_+_5244865_5244865 Show fit | 0.75 |
AT4G08300.1
|
nodulin MtN21 /EamA-like transporter family protein |
|
| arTal_v1_Chr2_-_15490347_15490449 Show fit | 0.70 |
AT2G36895.2
AT2G36895.3 AT2G36895.1 |
D-tagatose-1,6-bisphosphate aldolase subunit |
|
| arTal_v1_Chr4_+_5238773_5238917 Show fit | 0.67 |
AT4G08290.1
AT4G08290.2 |
nodulin MtN21 /EamA-like transporter family protein |
|
| arTal_v1_Chr3_-_7557969_7557969 Show fit | 0.67 |
AT3G21460.1
|
Glutaredoxin family protein |
|
| arTal_v1_Chr4_-_16806830_16806830 Show fit | 0.65 |
AT4G35320.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G25470
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 1.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 1.6 | GO:0080144 | amino acid homeostasis(GO:0080144) |
| 0.0 | 1.4 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.0 | 1.3 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.0 | 1.1 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.1 | 1.0 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.0 | 1.0 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.0 | 0.9 | GO:0008284 | positive regulation of cell proliferation(GO:0008284) |
| 0.1 | 0.8 | GO:0046482 | para-aminobenzoic acid metabolic process(GO:0046482) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 2.0 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 0.6 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.0 | 0.5 | GO:0000792 | heterochromatin(GO:0000792) |
| 0.0 | 0.5 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.0 | 0.4 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
| 0.0 | 0.4 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 0.3 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 0.2 | GO:0032432 | actin filament bundle(GO:0032432) |
| 0.1 | 0.2 | GO:0070382 | exocytic vesicle(GO:0070382) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.0 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 1.8 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.0 | 1.4 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.0 | 1.2 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 1.2 | GO:0005179 | hormone activity(GO:0005179) |
| 0.0 | 1.1 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.1 | 1.0 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.1 | 0.9 | GO:0004629 | phospholipase C activity(GO:0004629) |
| 0.0 | 0.9 | GO:0015179 | L-amino acid transmembrane transporter activity(GO:0015179) |
| 0.2 | 0.8 | GO:0080002 | indole-3-acetate beta-glucosyltransferase activity(GO:0047215) UDP-glucose:4-aminobenzoate acylglucosyltransferase activity(GO:0080002) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.0 | 0.1 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.1 | 0.3 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.1 | 0.3 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
| 0.1 | 0.2 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.0 | 0.2 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.0 | 0.1 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
| 0.0 | 0.1 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |