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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G24020

Z-value: 1.09

Transcription factors associated with AT4G24020

Gene Symbol Gene ID Gene Info
AT4G24020 NIN like protein 7

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
NLP7arTal_v1_Chr4_+_12479528_124795280.115.6e-01Click!

Activity profile of AT4G24020 motif

Sorted Z-values of AT4G24020 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_2341447 1.63 AT1G07610.1
metallothionein 1C
Chr3_-_7557969 1.32 AT3G21460.1
Glutaredoxin family protein
Chr1_+_7949476 1.29 AT1G22500.1
RING/U-box superfamily protein
Chr1_+_25574381 1.29 AT1G68238.1
transmembrane protein
Chr5_-_1459039 1.20 AT5G04950.1
nicotianamine synthase 1
Chr4_+_8937358 1.08 AT4G15700.1
Thioredoxin superfamily protein
Chr4_+_8929031 1.02 AT4G15670.1
Thioredoxin superfamily protein
Chr5_+_25524045 1.00 AT5G63780.2
RING/FYVE/PHD zinc finger superfamily protein
Chr5_+_25523827 0.97 AT5G63780.1
RING/FYVE/PHD zinc finger superfamily protein
Chr3_-_22907958 0.97 AT3G61880.1
AT3G61880.2
cytochrome p450 78a9
Chr4_+_8931617 0.94 AT4G15680.1
Thioredoxin superfamily protein
Chr5_-_16384504 0.93 AT5G40890.2
chloride channel A
Chr3_+_2347186 0.91 AT3G07350.1
sulfate/thiosulfate import ATP-binding protein, putative (DUF506)
Chr5_-_16385424 0.90 AT5G40890.1
chloride channel A
Chr5_+_25969190 0.90 AT5G65010.2
asparagine synthetase 2
Chr5_+_25969035 0.90 AT5G65010.1
asparagine synthetase 2
Chr5_+_6457026 0.88 AT5G19190.1
hypothetical protein
Chr1_-_5540002 0.83 AT1G16170.1
ephrin-A3 protein
Chr1_-_18322505 0.82 AT1G49500.2
transcription initiation factor TFIID subunit 1b-like protein
Chr1_-_18322284 0.80 AT1G49500.1
transcription initiation factor TFIID subunit 1b-like protein
Chr3_-_17910736 0.78 AT3G48360.3
AT3G48360.1
AT3G48360.2
BTB and TAZ domain protein 2
Chr5_-_6184038 0.78 AT5G18600.1
Thioredoxin superfamily protein
Chr5_+_9157142 0.76 AT5G26200.1
Mitochondrial substrate carrier family protein
Chr5_-_18383693 0.76 AT5G45350.2
AT5G45350.4
AT5G45350.3
AT5G45350.5
AT5G45350.7
proline-rich family protein
Chr4_-_9061833 0.75 AT4G15990.1
hypothetical protein
Chr4_+_5244865 0.73 AT4G08300.1
nodulin MtN21 /EamA-like transporter family protein
Chr4_-_15614544 0.72 AT4G32340.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_+_16945230 0.71 AT3G46130.2
AT3G46130.1
myb domain protein 48
Chr1_-_25816983 0.71 AT1G68740.1
AT1G68740.2
EXS (ERD1/XPR1/SYG1) family protein
Chr5_-_18383492 0.71 AT5G45350.6
proline-rich family protein
Chr3_+_18514266 0.70 AT3G49940.1
LOB domain-containing protein 38
Chr5_-_18384069 0.68 AT5G45350.1
proline-rich family protein
Chr2_+_9089226 0.66 AT2G21220.1
SAUR-like auxin-responsive protein family
Chr1_-_20043498 0.66 AT1G53690.2
AT1G53690.1
DNA directed RNA polymerase, 7 kDa subunit
Chr3_+_16945433 0.65 AT3G46130.3
AT3G46130.4
myb domain protein 48
Chr3_-_17194397 0.65 AT3G46670.1
UDP-glucosyl transferase 76E11
Chr1_-_624567 0.65 AT1G02820.1
Late embryogenesis abundant 3 (LEA3) family protein
Chr1_+_3888610 0.65 AT1G11580.2
AT1G11580.1
methylesterase PCR A
Chr5_+_20442613 0.65 AT5G50210.1
quinolinate synthase
Chr3_+_20396597 0.65 AT3G55030.1
phosphatidylglycerolphosphate synthase 2
Chr1_-_11719988 0.62 AT1G32450.1
nitrate transporter 1.5
Chr3_-_8393467 0.60 AT3G23430.1
phosphate 1
Chr3_-_16558169 0.57 AT3G45210.1
transcription initiation factor TFIID subunit (Protein of unknown function, DUF584)
Chr3_-_8036005 0.57 AT3G22740.1
homocysteine S-methyltransferase 3
Chr3_-_6000447 0.55 AT3G17520.1
Late embryogenesis abundant protein (LEA) family protein
Chr2_-_9085909 0.55 AT2G21210.1
AT2G21210.2
SAUR-like auxin-responsive protein family
Chr2_+_9926378 0.55 AT2G23321.1
hypothetical protein
Chr1_+_27790737 0.54 AT1G73920.1
AT1G73920.2
alpha/beta-Hydrolases superfamily protein
Chr4_-_16644928 0.54 AT4G34950.1
Major facilitator superfamily protein
Chr5_-_17907638 0.54 AT5G44420.1
plant defensin 1.2
Chr5_-_6617047 0.54 AT5G19600.1
sulfate transporter 3;5
Chr5_-_14753088 0.53 AT5G37260.1
Homeodomain-like superfamily protein
Chr1_+_29703055 0.52 AT1G78970.3
AT1G78970.1
lupeol synthase 1
Chr5_+_23003909 0.52 AT5G56870.1
beta-galactosidase 4
Chr1_+_23888832 0.51 AT1G64370.1
filaggrin-like protein
Chr5_+_15851389 0.50 AT5G39590.1
TLD-domain containing nucleolar protein
Chr5_-_26906517 0.50 AT5G67420.1
AT5G67420.2
LOB domain-containing protein 37
Chr3_-_18161486 0.49 AT3G48990.1
AMP-dependent synthetase and ligase family protein
Chr3_-_16984867 0.48 AT3G46230.1
heat shock protein 17.4
Chr2_+_8108898 0.48 AT2G18700.1
trehalose phosphatase/synthase 11
Chr1_+_3554104 0.47 AT1G10700.2
AT1G10700.1
phosphoribosyl pyrophosphate (PRPP) synthase 3
Chr1_+_2752124 0.47 AT1G08650.1
AT1G08650.2
phosphoenolpyruvate carboxylase kinase 1
Chr2_-_7990586 0.46 AT2G18400.1
ribosomal protein L6 family protein
Chr2_-_11518323 0.45 AT2G26980.5
AT2G26980.1
AT2G26980.2
CBL-interacting protein kinase 3
Chr5_+_6746814 0.45 AT5G19970.1
AT5G19970.2
GRAS family transcription factor family protein
Chr4_-_18459257 0.44 AT4G39780.1
Integrase-type DNA-binding superfamily protein
Chr3_-_7584741 0.44 AT3G21530.4
AT3G21530.1
AT3G21530.3
DNAse I-like superfamily protein
Chr3_+_4810888 0.43 AT3G14395.1
hypothetical protein
Chr1_+_19783185 0.42 AT1G53090.3
AT1G53090.1
AT1G53090.2
AT1G53090.5
AT1G53090.4
SPA1-related 4
Chr5_+_25191860 0.42 AT5G62720.2
Integral membrane HPP family protein
Chr4_-_17640925 0.42 AT4G37540.1
LOB domain-containing protein 39
Chr4_-_10132180 0.42 AT4G18340.2
AT4G18340.1
Glycosyl hydrolase superfamily protein
Chr5_+_25191402 0.41 AT5G62720.1
Integral membrane HPP family protein
Chr4_+_16277282 0.41 AT4G33960.1
hypothetical protein
Chr1_+_29347581 0.40 AT1G78050.1
phosphoglycerate/bisphosphoglycerate mutase
Chr1_-_25738134 0.40 AT1G68560.1
alpha-xylosidase 1
Chr4_-_9033648 0.39 AT4G15920.1
Nodulin MtN3 family protein
Chr1_+_10654800 0.38 AT1G30270.1
AT1G30270.2
AT1G30270.3
CBL-interacting protein kinase 23
Chr1_+_25781801 0.37 AT1G68670.1
myb-like transcription factor family protein
Chr2_+_19336653 0.37 AT2G47070.1
AT2G47070.2
squamosa promoter binding protein-like 1
Chr2_-_11518692 0.37 AT2G26980.4
AT2G26980.3
CBL-interacting protein kinase 3
Chr1_-_8271933 0.36 AT1G23310.2
AT1G23310.1
glutamate:glyoxylate aminotransferase
Chr4_+_10142255 0.36 AT4G18350.1
nine-cis-epoxycarotenoid dioxygenase 2
Chr3_-_20315164 0.36 AT3G54830.1
Transmembrane amino acid transporter family protein
Chr5_-_17705793 0.35 AT5G44005.1
hypothetical protein
Chr4_+_11150049 0.35 AT4G20820.1
FAD-binding Berberine family protein
Chr1_+_21967986 0.33 AT1G59740.1
Major facilitator superfamily protein
Chr3_-_20315887 0.33 AT3G54830.2
Transmembrane amino acid transporter family protein
Chr1_+_26038905 0.33 AT1G69260.1
ABI five binding protein
Chr5_+_18681326 0.33 AT5G46060.1
spastin, putative (Protein of unknown function, DUF599)
Chr5_+_5161724 0.33 AT5G15820.1
RING/U-box superfamily protein
Chr5_+_866339 0.33 AT5G03470.1
Protein phosphatase 2A regulatory B subunit family protein
Chr2_-_1535118 0.32 AT2G04410.1
RPM1-interacting protein 4 (RIN4) family protein
Chr1_+_8976326 0.32 AT1G25550.2
AT1G25550.1
myb-like transcription factor family protein
Chr1_-_24205775 0.32 AT1G65150.1
AT1G65150.2
TRAF-like family protein
Chr1_-_19408319 0.31 AT1G52140.1
Avr9/Cf-9 rapidly elicited protein
Chr1_-_22181313 0.31 AT1G60140.3
AT1G60140.4
AT1G60140.2
AT1G60140.1
trehalose phosphate synthase
Chr1_-_19672021 0.31 AT1G52827.1
cadmium tolerance 1
Chr1_+_27225665 0.31 AT1G72310.1
RING/U-box superfamily protein
Chr4_-_16308801 0.30 AT4G34040.1
RING/U-box superfamily protein
Chr5_+_9189425 0.30 AT5G26240.1
AT5G26240.2
chloride channel D
Chr5_+_24494291 0.30 AT5G60890.1
myb domain protein 34
Chr4_+_14192569 0.30 AT4G28720.1
Flavin-binding monooxygenase family protein
Chr1_-_24657638 0.30 AT1G66200.2
AT1G66200.3
AT1G66200.1
hypothetical protein
Chr1_-_1191458 0.29 AT1G04410.1
Lactate/malate dehydrogenase family protein
Chr3_-_5637870 0.29 AT3G16560.4
Protein phosphatase 2C family protein
Chr2_-_18075498 0.28 AT2G43560.2
AT2G43560.1
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Chr2_+_16782366 0.28 AT2G40180.1
phosphatase 2C5
Chr4_-_12339967 0.28 AT4G23690.1
Disease resistance-responsive (dirigent-like protein) family protein
Chr3_-_5638107 0.28 AT3G16560.2
Protein phosphatase 2C family protein
Chr3_+_13601800 0.27 AT3G33058.1

Chr3_-_3238267 0.27 AT3G10410.1
SERINE CARBOXYPEPTIDASE-LIKE 49
Chr2_-_14211693 0.27 AT2G33550.1
Homeodomain-like superfamily protein
Chr2_-_9577616 0.27 AT2G22530.1
Alkaline-phosphatase-like family protein
Chr1_+_29703330 0.26 AT1G78970.2
lupeol synthase 1
Chr4_+_14656954 0.26 AT4G29950.1
AT4G29950.3
AT4G29950.2
Ypt/Rab-GAP domain of gyp1p superfamily protein
Chr3_+_9195334 0.26 AT3G25250.1
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Chr5_+_9553300 0.26 AT5G27150.1
Na+/H+ exchanger 1
Chr4_-_1203380 0.26 AT4G02715.1
AT4G02715.2
flocculation FLO11-like protein
Chr1_-_8713225 0.26 AT1G24577.1
hypothetical protein
Chr2_+_18132484 0.25 AT2G43760.3
AT2G43760.2
AT2G43760.1
molybdopterin biosynthesis MoaE family protein
Chr3_-_5638576 0.25 AT3G16560.3
Protein phosphatase 2C family protein
Chr5_-_24083528 0.25 AT5G59780.2
AT5G59780.1
AT5G59780.3
myb domain protein 59
Chr2_+_14980891 0.25 AT2G35635.1
ubiquitin 7
Chr4_-_3950602 0.25 AT4G06700.1

Chr1_+_17382998 0.25 AT1G47395.1
hypothetical protein
Chr2_-_19361162 0.25 AT2G47160.2
HCO3- transporter family
Chr5_-_20919964 0.25 AT5G51500.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr3_-_7585856 0.25 AT3G21530.2
DNAse I-like superfamily protein
Chr2_-_1430406 0.25 AT2G04190.1
TRAF-like family protein
Chr2_-_19361328 0.25 AT2G47160.1
HCO3- transporter family
Chr5_-_17245988 0.25 AT5G42990.1
ubiquitin-conjugating enzyme 18
Chr1_-_18182391 0.24 AT1G49160.1
AT1G49160.4
AT1G49160.3
AT1G49160.5
AT1G49160.2
Protein kinase superfamily protein
Chr3_-_5638798 0.24 AT3G16560.1
Protein phosphatase 2C family protein
Chr1_-_7128762 0.24 AT1G20575.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr1_+_557092 0.24 AT1G02620.1
Ras-related small GTP-binding family protein
Chr1_-_22181740 0.24 AT1G60140.5
trehalose phosphate synthase
Chr3_-_16479559 0.24 AT3G45060.1
high affinity nitrate transporter 2.6
Chr3_+_1047640 0.24 AT3G04040.1
transmembrane protein
Chr1_-_6460210 0.24 AT1G18720.1
ER membrane protein, putative (DUF962)
Chr1_-_6460405 0.24 AT1G18720.2
ER membrane protein, putative (DUF962)
Chr5_+_23577388 0.23 AT5G58320.2
AT5G58320.4
AT5G58320.5
Kinase interacting (KIP1-like) family protein
Chr1_-_22180579 0.23 AT1G60140.6
trehalose phosphate synthase
Chr1_-_26800483 0.23 AT1G71040.1
Cupredoxin superfamily protein
Chr3_-_6804114 0.23 AT3G19580.2
zinc-finger protein 2
Chr3_+_4403355 0.23 AT3G13510.1
carboxyl-terminal peptidase, putative (DUF239)
Chr1_+_20458952 0.23 AT1G54870.2
AT1G54870.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_3945584 0.23 AT1G11700.1
senescence regulator (Protein of unknown function, DUF584)
Chr5_-_11024865 0.22 AT5G29000.2
AT5G29000.3
AT5G29000.1
Homeodomain-like superfamily protein
Chr3_+_23031531 0.22 AT3G62230.1
F-box family protein
Chr5_+_20315390 0.22 AT5G49940.1
AT5G49940.2
NIFU-like protein 2
Chr4_-_14135292 0.22 AT4G28610.1
phosphate starvation response 1
Chr2_+_12424303 0.22 AT2G28930.3
AT2G28930.2
protein kinase 1B
Chr5_+_26058031 0.22 AT5G65210.4
AT5G65210.2
bZIP transcription factor family protein
Chr1_-_14172040 0.22 AT1G37140.1
AT1G37140.2
MEI2 C-terminal RRM only like 1
Chr4_+_16139198 0.22 AT4G33580.3
beta carbonic anhydrase 5
Chr1_+_21676388 0.22 AT1G58360.1
amino acid permease 1
Chr5_+_5438165 0.21 AT5G16600.1
myb domain protein 43
Chr3_+_5539631 0.21 AT3G16340.2
pleiotropic drug resistance 1
Chr4_-_7201571 0.21 AT4G12010.1
Disease resistance protein (TIR-NBS-LRR class) family
Chr3_+_5539385 0.21 AT3G16340.1
pleiotropic drug resistance 1
Chr1_+_28668664 0.21 AT1G76410.1
RING/U-box superfamily protein
Chr4_+_5775210 0.20 AT4G09000.1
AT4G09000.2
general regulatory factor 1
Chr1_+_26131294 0.20 AT1G69526.2
AT1G69526.3
AT1G69526.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_-_29239484 0.20 AT1G77760.1
nitrate reductase 1
Chr4_+_13163929 0.20 AT4G25910.1
NFU domain protein 3
Chr5_+_15256243 0.20 AT5G38200.2
AT5G38200.3
AT5G38200.1
Class I glutamine amidotransferase-like superfamily protein
Chr4_+_16138251 0.20 AT4G33580.1
AT4G33580.2
beta carbonic anhydrase 5
Chr5_+_23577765 0.20 AT5G58320.3
Kinase interacting (KIP1-like) family protein
Chr4_-_17192445 0.20 AT4G36380.2
AT4G36380.1
Cytochrome P450 superfamily protein
Chr1_+_25785506 0.19 AT1G68680.1
SH3/FCH domain protein
Chr5_+_23524487 0.19 AT5G58140.4
AT5G58140.3
phototropin 2
Chr5_+_23577128 0.19 AT5G58320.1
Kinase interacting (KIP1-like) family protein
Chr5_-_7106834 0.19 AT5G20940.1
Glycosyl hydrolase family protein
Chr5_+_23523825 0.19 AT5G58140.2
AT5G58140.5
phototropin 2
Chr4_-_17355891 0.19 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
PQ-loop repeat family protein / transmembrane family protein
Chr5_+_23524130 0.19 AT5G58140.7
AT5G58140.6
AT5G58140.1
phototropin 2
Chr2_+_8080354 0.19 AT2G18630.2
AT2G18630.1
transmembrane protein, putative (DUF677)
Chr5_+_26057533 0.19 AT5G65210.1
AT5G65210.6
bZIP transcription factor family protein
Chr5_+_26057814 0.19 AT5G65210.5
AT5G65210.3
bZIP transcription factor family protein
Chr3_-_6804296 0.19 AT3G19580.1
zinc-finger protein 2
Chr2_-_15993276 0.19 AT2G38170.2
AT2G38170.3
AT2G38170.1
cation exchanger 1
Chr5_-_26899736 0.19 AT5G67411.1
GRAS family transcription factor
Chr1_+_4556878 0.19 AT1G13300.1
myb-like transcription factor family protein
Chr5_+_26058542 0.19 AT5G65210.7
bZIP transcription factor family protein
Chr3_+_3786314 0.18 AT3G11960.3
AT3G11960.4
AT3G11960.1
AT3G11960.2
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Chr1_+_6913001 0.18 AT1G19910.1
AT1G19910.2
ATPase, F0/V0 complex, subunit C protein
Chr1_-_7160590 0.18 AT1G20650.1
Protein kinase superfamily protein
Chr5_-_25071111 0.18 AT5G62430.1
cycling DOF factor 1
Chr1_+_4606500 0.18 AT1G13430.1
sulfotransferase 4C
Chr4_-_16781411 0.18 AT4G35270.4
AT4G35270.3
Plant regulator RWP-RK family protein
Chr2_-_17336969 0.18 AT2G41560.4
autoinhibited Ca(2+)-ATPase, isoform 4
Chr1_+_190408 0.18 AT1G01520.4
AT1G01520.2
AT1G01520.3
AT1G01520.1
AT1G01520.5
Homeodomain-like superfamily protein
Chr2_-_17337269 0.18 AT2G41560.2
AT2G41560.3
autoinhibited Ca(2+)-ATPase, isoform 4
Chr1_+_24538886 0.18 AT1G65930.1
cytosolic NADP+-dependent isocitrate dehydrogenase
Chr2_-_17337492 0.17 AT2G41560.1
autoinhibited Ca(2+)-ATPase, isoform 4
Chr4_-_8331864 0.17 AT4G14480.1
Protein kinase superfamily protein
Chr1_-_26300684 0.17 AT1G69850.1
nitrate transporter 1:2
Chr5_-_11024275 0.17 AT5G29000.4
Homeodomain-like superfamily protein
Chr4_-_16782054 0.17 AT4G35270.1
AT4G35270.2
Plant regulator RWP-RK family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G24020

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.2 GO:0030417 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.3 1.8 GO:0070981 L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982)
0.3 0.8 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.3 1.3 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.2 1.8 GO:0006821 chloride transport(GO:0006821)
0.2 0.8 GO:0016099 monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099)
0.2 0.6 GO:0033528 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.2 0.5 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.2 0.5 GO:0046521 sphingoid catabolic process(GO:0046521)
0.2 0.8 GO:0019745 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.2 0.5 GO:0046391 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391)
0.1 0.4 GO:0034486 hexose transport(GO:0008645) fructose transport(GO:0015755) vacuolar transmembrane transport(GO:0034486)
0.1 0.3 GO:0035865 cellular response to potassium ion(GO:0035865)
0.1 0.6 GO:0032410 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.1 0.6 GO:0006531 aspartate metabolic process(GO:0006531) positive regulation of sulfur metabolic process(GO:0051176)
0.1 0.5 GO:0046713 borate transport(GO:0046713)
0.1 0.4 GO:1902458 positive regulation of stomatal opening(GO:1902458)
0.1 0.2 GO:0006493 protein O-linked glycosylation(GO:0006493)
0.1 0.4 GO:0009590 detection of gravity(GO:0009590)
0.1 0.6 GO:0006542 glutamine biosynthetic process(GO:0006542)
0.1 0.1 GO:0031114 regulation of microtubule depolymerization(GO:0031114)
0.1 1.6 GO:0046688 response to copper ion(GO:0046688)
0.1 0.6 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655)
0.1 2.0 GO:0010492 maintenance of shoot apical meristem identity(GO:0010492)
0.1 0.3 GO:0010351 lithium ion transport(GO:0010351)
0.1 0.2 GO:1904215 regulation of protein import into chloroplast stroma(GO:1904215)
0.1 0.4 GO:0030002 cellular anion homeostasis(GO:0030002)
0.1 0.3 GO:0006107 oxaloacetate metabolic process(GO:0006107)
0.1 0.3 GO:0009806 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.1 0.2 GO:0051938 L-amino acid import(GO:0043092) L-glutamate import(GO:0051938) L-alpha-amino acid transmembrane transport(GO:1902475)
0.1 0.4 GO:0097428 protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.1 0.4 GO:0006751 glutathione catabolic process(GO:0006751)
0.1 0.2 GO:0009660 amyloplast organization(GO:0009660)
0.1 0.3 GO:0071585 detoxification of cadmium ion(GO:0071585)
0.1 0.3 GO:0048442 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.1 0.2 GO:0002119 nematode larval development(GO:0002119) larval development(GO:0002164) regulation of nematode larval development(GO:0061062)
0.1 0.2 GO:0055047 generative cell mitosis(GO:0055047)
0.1 0.3 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.0 0.6 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.0 0.2 GO:0006427 histidyl-tRNA aminoacylation(GO:0006427)
0.0 0.1 GO:0010220 positive regulation of vernalization response(GO:0010220)
0.0 0.6 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.1 GO:0001738 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.0 0.2 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.0 0.4 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.2 GO:0009650 photoreactive repair(GO:0000719) UV protection(GO:0009650)
0.0 0.5 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.1 GO:0019586 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.0 0.1 GO:0080003 thalianol metabolic process(GO:0080003)
0.0 0.7 GO:0046834 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.0 0.1 GO:0034635 glutathione transport(GO:0034635) tripeptide transport(GO:0042939)
0.0 0.5 GO:0043649 dicarboxylic acid catabolic process(GO:0043649)
0.0 0.2 GO:0071249 cellular response to nitrate(GO:0071249)
0.0 0.4 GO:0015976 carbon utilization(GO:0015976)
0.0 0.5 GO:0009861 jasmonic acid and ethylene-dependent systemic resistance(GO:0009861)
0.0 0.1 GO:0010455 positive regulation of cell fate commitment(GO:0010455)
0.0 0.3 GO:0007584 response to nutrient(GO:0007584)
0.0 0.1 GO:0034059 response to anoxia(GO:0034059)
0.0 0.6 GO:0006817 phosphate ion transport(GO:0006817)
0.0 0.2 GO:0006882 cellular zinc ion homeostasis(GO:0006882) cellular manganese ion homeostasis(GO:0030026)
0.0 0.3 GO:0010440 stomatal lineage progression(GO:0010440)
0.0 0.1 GO:0051452 vacuolar acidification(GO:0007035) intracellular pH reduction(GO:0051452)
0.0 0.1 GO:0042989 sequestering of actin monomers(GO:0042989)
0.0 0.2 GO:0033206 meiotic cytokinesis(GO:0033206)
0.0 0.3 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
0.0 0.5 GO:0043069 negative regulation of programmed cell death(GO:0043069)
0.0 0.4 GO:0045493 xylan catabolic process(GO:0045493)
0.0 0.1 GO:0006654 phosphatidic acid biosynthetic process(GO:0006654)
0.0 0.2 GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c(GO:0006122)
0.0 0.2 GO:0042814 monopolar cell growth(GO:0042814)
0.0 0.1 GO:0048577 negative regulation of short-day photoperiodism, flowering(GO:0048577)
0.0 0.1 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.0 0.1 GO:0010233 vascular transport(GO:0010232) phloem transport(GO:0010233)
0.0 0.1 GO:0009303 rRNA transcription(GO:0009303)
0.0 0.2 GO:0000266 mitochondrial fission(GO:0000266)
0.0 0.3 GO:0031647 regulation of protein stability(GO:0031647)
0.0 0.0 GO:0015744 succinate transport(GO:0015744)
0.0 0.1 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.0 0.5 GO:0051259 protein oligomerization(GO:0051259)
0.0 0.1 GO:0006828 manganese ion transport(GO:0006828)
0.0 0.1 GO:1902074 response to salt(GO:1902074)
0.0 0.0 GO:0010495 long-distance posttranscriptional gene silencing(GO:0010495)
0.0 0.2 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.0 0.1 GO:0006491 N-glycan processing(GO:0006491)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0043667 pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
0.2 0.5 GO:0002189 ribose phosphate diphosphokinase complex(GO:0002189)
0.1 0.2 GO:0031501 mannosyltransferase complex(GO:0031501) dolichol-phosphate-mannose synthase complex(GO:0033185)
0.0 0.2 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.0 0.2 GO:0043036 chloroplast starch grain(GO:0009569) starch grain(GO:0043036)
0.0 0.7 GO:0005736 DNA-directed RNA polymerase I complex(GO:0005736)
0.0 3.4 GO:0009705 plant-type vacuole membrane(GO:0009705)
0.0 0.2 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.0 0.2 GO:0009533 chloroplast stromal thylakoid(GO:0009533)
0.0 0.9 GO:0005811 lipid particle(GO:0005811)
0.0 0.1 GO:0090544 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.0 0.3 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 0.1 GO:0009538 photosystem I reaction center(GO:0009538)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.8 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.6 1.8 GO:0004071 aspartate-ammonia ligase activity(GO:0004071)
0.3 1.2 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.2 0.6 GO:0047150 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.2 0.5 GO:0004749 ribose phosphate diphosphokinase activity(GO:0004749)
0.1 0.4 GO:0015292 uniporter activity(GO:0015292)
0.1 0.8 GO:0050551 myrcene synthase activity(GO:0050551)
0.1 0.5 GO:0080139 borate transmembrane transporter activity(GO:0046715) borate efflux transmembrane transporter activity(GO:0080139)
0.1 0.8 GO:0042299 lupeol synthase activity(GO:0042299)
0.1 0.5 GO:0031956 medium-chain fatty acid-CoA ligase activity(GO:0031956)
0.1 0.3 GO:0051377 mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.1 0.4 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.1 0.6 GO:0016880 ammonia ligase activity(GO:0016211) acid-ammonia (or amide) ligase activity(GO:0016880)
0.1 0.3 GO:0005254 voltage-gated chloride channel activity(GO:0005247) chloride channel activity(GO:0005254)
0.1 0.4 GO:0000048 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.1 0.2 GO:0022858 L-alanine transmembrane transporter activity(GO:0015180) alanine transmembrane transporter activity(GO:0022858)
0.1 0.6 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.1 0.6 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.2 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.1 0.2 GO:0004582 dolichyl-phosphate beta-D-mannosyltransferase activity(GO:0004582)
0.1 0.2 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.1 0.3 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.1 0.4 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.0 0.2 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.0 0.3 GO:0015369 calcium:proton antiporter activity(GO:0015369)
0.0 0.2 GO:0004821 histidine-tRNA ligase activity(GO:0004821)
0.0 0.2 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.0 0.2 GO:0080118 brassinosteroid sulfotransferase activity(GO:0080118)
0.0 0.6 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.2 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.0 1.3 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.0 0.2 GO:0003913 DNA photolyase activity(GO:0003913)
0.0 1.0 GO:0051539 4 iron, 4 sulfur cluster binding(GO:0051539)
0.0 0.6 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.0 0.1 GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity(GO:0004571)
0.0 0.4 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.0 0.2 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.9 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.0 0.1 GO:0046027 phospholipid:diacylglycerol acyltransferase activity(GO:0046027)
0.0 0.3 GO:0017169 CDP-alcohol phosphatidyltransferase activity(GO:0017169)
0.0 0.1 GO:0050412 cinnamate beta-D-glucosyltransferase activity(GO:0050412)
0.0 0.2 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.3 GO:0035198 miRNA binding(GO:0035198)
0.0 0.3 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.0 0.1 GO:0051010 microtubule plus-end binding(GO:0051010)
0.0 0.1 GO:0004839 ubiquitin activating enzyme activity(GO:0004839)
0.0 0.3 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.0 0.1 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.0 0.1 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.0 0.5 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.1 GO:0052691 UDP-arabinopyranose mutase activity(GO:0052691)
0.0 0.1 GO:0019156 isoamylase activity(GO:0019156)
0.0 0.1 GO:0047912 galacturonokinase activity(GO:0047912)
0.0 0.1 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.3 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 0.1 GO:0035673 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.0 0.7 GO:0080044 quercetin 7-O-glucosyltransferase activity(GO:0080044)
0.0 0.9 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.7 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 0.2 GO:0015248 sterol transporter activity(GO:0015248)
0.0 0.1 GO:0048038 quinone binding(GO:0048038)
0.0 0.1 GO:0005034 osmosensor activity(GO:0005034)
0.0 0.2 GO:0008106 alcohol dehydrogenase (NADP+) activity(GO:0008106)
0.0 0.6 GO:0004683 calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 REACTOME GLUTATHIONE CONJUGATION Genes involved in Glutathione conjugation
0.1 0.3 REACTOME G1 S SPECIFIC TRANSCRIPTION Genes involved in G1/S-Specific Transcription
0.0 0.1 REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT Genes involved in SLC-mediated transmembrane transport