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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G24020
Z-value: 1.09
Transcription factors associated with AT4G24020
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G24020
|
AT4G24020 | NIN like protein 7 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NLP7 | arTal_v1_Chr4_+_12479528_12479528 | 0.11 | 5.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_2341447_2341447 Show fit | 1.63 |
AT1G07610.1
|
metallothionein 1C |
|
| arTal_v1_Chr3_-_7557969_7557969 Show fit | 1.32 |
AT3G21460.1
|
Glutaredoxin family protein |
|
| arTal_v1_Chr1_+_7949476_7949476 Show fit | 1.29 |
AT1G22500.1
|
RING/U-box superfamily protein |
|
| arTal_v1_Chr1_+_25574381_25574381 Show fit | 1.29 |
AT1G68238.1
|
transmembrane protein |
|
| arTal_v1_Chr5_-_1459039_1459039 Show fit | 1.20 |
AT5G04950.1
|
nicotianamine synthase 1 |
|
| arTal_v1_Chr4_+_8937358_8937358 Show fit | 1.08 |
AT4G15700.1
|
Thioredoxin superfamily protein |
|
| arTal_v1_Chr4_+_8929031_8929031 Show fit | 1.02 |
AT4G15670.1
|
Thioredoxin superfamily protein |
|
| arTal_v1_Chr5_+_25524045_25524045 Show fit | 1.00 |
AT5G63780.2
|
RING/FYVE/PHD zinc finger superfamily protein |
|
| arTal_v1_Chr5_+_25523827_25523827 Show fit | 0.97 |
AT5G63780.1
|
RING/FYVE/PHD zinc finger superfamily protein |
|
| arTal_v1_Chr3_-_22907958_22907958 Show fit | 0.97 |
AT3G61880.1
AT3G61880.2 |
cytochrome p450 78a9 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G24020
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.0 | GO:0010492 | maintenance of shoot apical meristem identity(GO:0010492) |
| 0.3 | 1.8 | GO:0070981 | L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982) |
| 0.2 | 1.8 | GO:0006821 | chloride transport(GO:0006821) |
| 0.1 | 1.6 | GO:0046688 | response to copper ion(GO:0046688) |
| 0.3 | 1.3 | GO:0033591 | response to L-ascorbic acid(GO:0033591) |
| 0.3 | 1.2 | GO:0030417 | nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351) |
| 0.3 | 0.8 | GO:0051973 | positive regulation of telomerase activity(GO:0051973) |
| 0.2 | 0.8 | GO:0016099 | monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099) |
| 0.2 | 0.8 | GO:0019745 | pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745) |
| 0.0 | 0.7 | GO:0046834 | lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.4 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 0.9 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 0.7 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
| 0.2 | 0.6 | GO:0043667 | pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
| 0.2 | 0.5 | GO:0002189 | ribose phosphate diphosphokinase complex(GO:0002189) |
| 0.0 | 0.3 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
| 0.1 | 0.2 | GO:0031501 | mannosyltransferase complex(GO:0031501) dolichol-phosphate-mannose synthase complex(GO:0033185) |
| 0.0 | 0.2 | GO:0000220 | vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220) |
| 0.0 | 0.2 | GO:0043036 | chloroplast starch grain(GO:0009569) starch grain(GO:0043036) |
| 0.0 | 0.2 | GO:0031464 | Cul4A-RING E3 ubiquitin ligase complex(GO:0031464) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.8 | GO:0009671 | nitrate:proton symporter activity(GO:0009671) |
| 0.6 | 1.8 | GO:0004071 | aspartate-ammonia ligase activity(GO:0004071) |
| 0.0 | 1.3 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
| 0.3 | 1.2 | GO:0030410 | nicotianamine synthase activity(GO:0030410) |
| 0.0 | 1.0 | GO:0051539 | 4 iron, 4 sulfur cluster binding(GO:0051539) |
| 0.0 | 0.9 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 0.9 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 0.8 | GO:0050551 | myrcene synthase activity(GO:0050551) |
| 0.1 | 0.8 | GO:0042299 | lupeol synthase activity(GO:0042299) |
| 0.0 | 0.7 | GO:0080044 | quercetin 7-O-glucosyltransferase activity(GO:0080044) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.1 | 0.3 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.0 | 0.1 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |