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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G23980

Z-value: 0.28

Transcription factors associated with AT4G23980

Gene Symbol Gene ID Gene Info
AT4G23980
AT4G23980 auxin response factor 9

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ARF9arTal_v1_Chr4_+_12451143_12451198-0.843.2e-08Click!

Activity profile of AT4G23980 motif

Sorted Z-values of AT4G23980 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_10316886 0.91 AT4G18780.1
IRX1
cellulose synthase family protein
Chr5_+_17714390 0.78 AT5G44030.2
AT5G44030.1
CESA4
cellulose synthase A4
Chr5_-_5741500 0.76 AT5G17420.1
IRX3
Cellulose synthase family protein
Chr5_+_17715687 0.51 AT5G44030.3
CESA4
cellulose synthase A4
Chr3_+_3203988 0.51 AT3G10340.1
PAL4
phenylalanine ammonia-lyase 4
Chr4_-_16063070 0.50 AT4G33330.2
AT4G33330.1
AT4G33330.5
AT4G33330.3
AT4G33330.4
PGSIP3
plant glycogenin-like starch initiation protein 3
Chr5_+_5084524 0.47 AT5G15630.1
AT5G15630.2
AT5G15630.3
AT5G15630.4
AT5G15630.5
IRX6
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Chr1_+_27076020 0.31 AT1G71930.1
VND7
vascular related NAC-domain protein 7
Chr1_+_27074702 0.26 AT1G71930.2
VND7
vascular related NAC-domain protein 7
Chr3_-_2578276 0.22 AT3G08500.1
MYB83
myb domain protein 83
Chr5_-_4065075 0.04 AT5G12870.1
MYB46
myb domain protein 46
Chr5_+_24396981 0.02 AT5G60690.1
REV
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G23980

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.2 0.8 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.1 0.5 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.1 0.6 GO:0090059 protoxylem development(GO:0090059)
0.0 1.3 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.5 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 0.5 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0010330 cellulose synthase complex(GO:0010330)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.1 0.5 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.1 3.0 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)