ISMARA results: AT4G23810

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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G23810

Z-value: 1.04

Transcription factors associated with AT4G23810

Gene Symbol	Gene ID	Gene Info
AT4G23810 TAIR	AT4G23810	WRKY family transcription factor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
WRKY53	arTal_v1_Chr4_-_12393982_12393982	0.44	2.0e-02	Click!

Activity profile of AT4G23810 motif

Sorted Z-values of AT4G23810 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr5_+_18613239_18613239 Show fit	16.09	AT5G45890.1	SAG12 TAIR Show fit	senescence-associated gene 12
arTal_v1_Chr2_-_19166949_19166967 Show fit	7.43	AT2G46680.2 AT2G46680.1	HB-7 TAIR Show fit	homeobox 7
arTal_v1_Chr1_-_23019494_23019494 Show fit	5.75	AT1G62300.1	WRKY6 TAIR Show fit	WRKY family transcription factor
arTal_v1_Chr3_+_25355_25507 Show fit	5.39	AT3G01080.2 AT3G01080.3 AT3G01080.1	WRKY58 TAIR Show fit	WRKY DNA-binding protein 58
arTal_v1_Chr4_+_13236253_13236253 Show fit	4.69	AT4G26120.2	AT4G26120 TAIR Show fit	Ankyrin repeat family protein / BTB/POZ domain-containing protein
arTal_v1_Chr4_+_13236448_13236448 Show fit	4.64	AT4G26120.1	AT4G26120 TAIR Show fit	Ankyrin repeat family protein / BTB/POZ domain-containing protein
arTal_v1_Chr4_+_15383633_15383633 Show fit	4.24	AT4G31800.2	WRKY18 TAIR Show fit	WRKY DNA-binding protein 18
arTal_v1_Chr4_+_15383197_15383197 Show fit	4.13	AT4G31800.3	WRKY18 TAIR Show fit	WRKY DNA-binding protein 18
arTal_v1_Chr3_-_2890520_2890574 Show fit	4.12	AT3G09390.2 AT3G09390.1	MT2A TAIR Show fit	metallothionein 2A
arTal_v1_Chr4_+_15382777_15382777 Show fit	3.99	AT4G31800.1	WRKY18 TAIR Show fit	WRKY DNA-binding protein 18

Showing 1 to 10 of 44 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G23810

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
2.3	16.1	GO:0080187	floral organ senescence(GO:0080187)
1.4	13.8	GO:0050691	regulation of defense response to virus by host(GO:0050691)
0.2	9.3	GO:2000022	regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.5	7.4	GO:0048496	maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
1.4	5.7	GO:0080029	cellular response to boron-containing substance levels(GO:0080029)
0.0	5.4	GO:0031347	regulation of defense response(GO:0031347)
0.4	4.1	GO:0006878	cellular copper ion homeostasis(GO:0006878)
0.6	3.9	GO:0006000	fructose metabolic process(GO:0006000)
1.2	3.6	GO:0018119	protein nitrosylation(GO:0017014) peptidyl-cysteine S-nitrosylation(GO:0018119) peptidyl-cysteine S-trans-nitrosylation(GO:0035606)
0.0	3.3	GO:0009867	jasmonic acid mediated signaling pathway(GO:0009867)

Showing 1 to 10 of 22 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	16.1	GO:0005764	lysosome(GO:0005764)
0.0	3.6	GO:0005635	nuclear envelope(GO:0005635)
0.1	0.7	GO:0000808	origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)

Showing 1 to 3 of 3 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	17.9	GO:0003700	nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700)
0.2	16.1	GO:0004197	cysteine-type endopeptidase activity(GO:0004197)
0.1	14.9	GO:0008289	lipid binding(GO:0008289)
0.0	12.4	GO:0042802	identical protein binding(GO:0042802)
0.0	4.1	GO:0005507	copper ion binding(GO:0005507)
0.4	3.9	GO:0008865	fructokinase activity(GO:0008865)
1.2	3.6	GO:0035605	peptidyl-cysteine S-nitrosylase activity(GO:0035605)
0.2	3.1	GO:0030955	pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.1	2.5	GO:0004864	protein phosphatase inhibitor activity(GO:0004864)
0.1	2.2	GO:0080030	methyl indole-3-acetate esterase activity(GO:0080030)

Showing 1 to 10 of 15 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.7	4.1	PID AP1 PATHWAY	AP-1 transcription factor network

Showing 1 to 1 of 1 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.5	4.1	REACTOME INTERFERON SIGNALING	Genes involved in Interferon Signaling
0.1	0.7	REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION	Genes involved in E2F-enabled inhibition of pre-replication complex formation

Showing 1 to 2 of 2 entries

Results for AT4G23810

Z-value: 1.04

Transcription factors associated with AT4G23810

Activity-expression correlation:

Activity profile of AT4G23810 motif

Sorted Z-values of AT4G23810 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G23810

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: