Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT4G23550
Z-value: 2.06
Transcription factors associated with AT4G23550
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G23550
|
AT4G23550 | WRKY family transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY29 | arTal_v1_Chr4_+_12291632_12291632 | 0.55 | 2.5e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 9.59 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_+_18066960_18066960 Show fit | 9.48 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
|
| arTal_v1_Chr2_-_13101371_13101371 Show fit | 9.48 |
AT2G30750.1
|
cytochrome P450 family 71 polypeptide |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 9.29 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr1_-_24433165_24433165 Show fit | 8.77 |
AT1G65690.1
|
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
|
| arTal_v1_Chr2_+_19375985_19375985 Show fit | 8.33 |
AT2G47190.1
|
myb domain protein 2 |
|
| arTal_v1_Chr3_+_17724400_17724400 Show fit | 8.09 |
AT3G48020.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_18646606_18646606 Show fit | 7.99 |
AT2G45220.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr1_-_25662276_25662276 Show fit | 7.62 |
AT1G68450.1
|
VQ motif-containing protein |
|
| arTal_v1_Chr3_-_1063103_1063234 Show fit | 7.61 |
AT3G04070.2
AT3G04070.1 |
NAC domain containing protein 47 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G23550
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 19.6 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.4 | 15.2 | GO:0010252 | auxin homeostasis(GO:0010252) |
| 0.3 | 14.9 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 2.1 | 14.7 | GO:0006597 | spermine biosynthetic process(GO:0006597) |
| 0.1 | 12.5 | GO:0009620 | response to fungus(GO:0009620) |
| 0.3 | 12.1 | GO:0031348 | negative regulation of defense response(GO:0031348) |
| 0.3 | 11.9 | GO:0006874 | cellular calcium ion homeostasis(GO:0006874) |
| 0.0 | 11.6 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.3 | 11.0 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.5 | 10.5 | GO:0010112 | regulation of systemic acquired resistance(GO:0010112) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 121.3 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 13.1 | GO:0099503 | secretory vesicle(GO:0099503) |
| 1.4 | 13.0 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.0 | 11.7 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 11.3 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.5 | 10.2 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.4 | 10.0 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
| 0.4 | 9.0 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.2 | 7.5 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.2 | 6.1 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 32.9 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 32.3 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 1.5 | 20.9 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
| 0.9 | 20.5 | GO:0004568 | chitinase activity(GO:0004568) |
| 2.8 | 19.8 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 2.9 | 14.7 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.3 | 12.6 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.1 | 12.0 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 1.0 | 11.4 | GO:0050373 | UDP-arabinose 4-epimerase activity(GO:0050373) |
| 1.2 | 11.0 | GO:0015172 | acidic amino acid transmembrane transporter activity(GO:0015172) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 4.0 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.5 | 2.7 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.3 | 2.4 | PID P73PATHWAY | p73 transcription factor network |
| 0.3 | 2.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.5 | 1.9 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.2 | 0.7 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 0.3 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
| 0.0 | 0.1 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 5.7 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.4 | 4.0 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.5 | 3.7 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.2 | 1.9 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.3 | 1.8 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.2 | 1.8 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.4 | 1.7 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.1 | 1.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.4 | 1.1 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.3 | 0.9 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |