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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G21080
Z-value: 0.60
Transcription factors associated with AT4G21080
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G21080
|
AT4G21080 | Dof-type zinc finger domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DOF4.5 | arTal_v1_Chr4_-_11255351_11255351 | -0.06 | 7.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 1.27 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 1.04 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 1.03 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 1.03 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 1.00 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 0.98 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 0.96 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_26141726_26141836 Show fit | 0.94 |
AT1G69530.2
AT1G69530.1 AT1G69530.3 AT1G69530.5 AT1G69530.4 |
expansin A1 |
|
| arTal_v1_Chr1_+_11310997_11310997 Show fit | 0.88 |
AT1G31580.1
|
ECS1 |
|
| arTal_v1_Chr4_-_7316871_7316871 Show fit | 0.84 |
AT4G12320.1
|
cytochrome P450, family 706, subfamily A, polypeptide 6 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G21080
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 4.5 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.1 | 4.2 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.2 | 4.1 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 3.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 2.6 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.4 | 2.3 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.3 | 2.3 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
| 0.2 | 2.3 | GO:0019685 | photosynthesis, dark reaction(GO:0019685) |
| 0.0 | 2.0 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 1.9 | GO:0043572 | chloroplast fission(GO:0010020) plastid fission(GO:0043572) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 27.1 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 23.2 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 12.3 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 11.1 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 8.1 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 7.5 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 4.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.4 | 3.7 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.2 | 2.4 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.1 | 2.4 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.5 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.2 | 5.4 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 5.2 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.2 | 4.2 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 3.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 2.9 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 2.7 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.4 | 2.4 | GO:0004121 | cystathionine beta-lyase activity(GO:0004121) |
| 0.1 | 2.2 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.0 | 2.2 | GO:0070008 | serine-type exopeptidase activity(GO:0070008) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 1.0 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.3 | 0.8 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.1 | 0.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.4 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.3 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.3 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
| 0.1 | 0.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.2 | PID P53 REGULATION PATHWAY | p53 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 4.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 0.9 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.3 | 0.8 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
| 0.0 | 0.5 | REACTOME CLASS A1 RHODOPSIN LIKE RECEPTORS | Genes involved in Class A/1 (Rhodopsin-like receptors) |
| 0.1 | 0.4 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.4 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.1 | 0.4 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |
| 0.1 | 0.3 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.1 | 0.3 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 0.2 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |