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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G21030
Z-value: 0.86
Transcription factors associated with AT4G21030
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G21030
|
AT4G21030 | Dof-type zinc finger domain-containing protein |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_4762457_4762457 Show fit | 4.23 |
AT3G14280.1
|
LL-diaminopimelate aminotransferase |
|
| arTal_v1_Chr4_+_10974456_10974510 Show fit | 4.10 |
AT4G20320.2
AT4G20320.4 AT4G20320.3 AT4G20320.1 AT4G20320.5 AT4G20320.6 |
CTP synthase family protein |
|
| arTal_v1_Chr3_-_7576623_7576721 Show fit | 3.83 |
AT3G21500.1
AT3G21500.3 AT3G21500.2 |
1-deoxy-D-xylulose 5-phosphate synthase 1 |
|
| arTal_v1_Chr5_-_23281271_23281271 Show fit | 3.01 |
AT5G57480.1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|
| arTal_v1_Chr4_+_11655562_11655613 Show fit | 2.92 |
AT4G21980.1
AT4G21980.2 |
Ubiquitin-like superfamily protein |
|
| arTal_v1_Chr5_-_5759817_5759817 Show fit | 2.90 |
AT5G17460.3
AT5G17460.2 AT5G17460.1 |
glutamyl-tRNA (Gln) amidotransferase subunit C |
|
| arTal_v1_Chr2_-_12629640_12629640 Show fit | 2.90 |
AT2G29470.1
|
glutathione S-transferase tau 3 |
|
| arTal_v1_Chr1_+_2867203_2867271 Show fit | 2.79 |
AT1G08920.1
AT1G08920.2 AT1G08920.3 |
ERD (early response to dehydration) six-like 1 |
|
| arTal_v1_Chr2_-_13549571_13549571 Show fit | 2.72 |
AT2G31865.3
AT2G31865.1 AT2G31865.2 |
poly(ADP-ribose) glycohydrolase 2 |
|
| arTal_v1_Chr4_-_11585391_11585391 Show fit | 2.60 |
AT4G21830.2
|
methionine sulfoxide reductase B7 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G21030
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 7.9 | GO:0006597 | spermine biosynthetic process(GO:0006597) |
| 0.5 | 5.1 | GO:0000304 | response to singlet oxygen(GO:0000304) |
| 0.1 | 5.1 | GO:0006874 | cellular calcium ion homeostasis(GO:0006874) |
| 0.0 | 3.9 | GO:0009615 | response to virus(GO:0009615) |
| 0.1 | 3.8 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.5 | 3.3 | GO:0006000 | fructose metabolic process(GO:0006000) |
| 0.1 | 2.9 | GO:0006914 | autophagy(GO:0006914) |
| 0.2 | 2.8 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 0.2 | 2.8 | GO:0010262 | somatic embryogenesis(GO:0010262) |
| 0.1 | 2.7 | GO:0006282 | regulation of DNA repair(GO:0006282) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.0 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 1.0 | 2.9 | GO:0005775 | vacuolar lumen(GO:0005775) |
| 0.1 | 2.8 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 2.8 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 2.2 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.1 | 1.5 | GO:0000176 | nuclear exosome (RNase complex)(GO:0000176) |
| 0.0 | 1.5 | GO:0005819 | spindle(GO:0005819) |
| 0.0 | 1.3 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
| 0.2 | 1.2 | GO:1990124 | messenger ribonucleoprotein complex(GO:1990124) |
| 0.1 | 1.2 | GO:0031358 | intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 7.9 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.0 | 5.2 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.5 | 5.1 | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity(GO:0008113) |
| 1.3 | 3.8 | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661) |
| 0.0 | 3.8 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.1 | 3.6 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
| 0.0 | 3.5 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.3 | 3.3 | GO:0008865 | fructokinase activity(GO:0008865) |
| 0.0 | 3.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 1.0 | 2.9 | GO:0019779 | Atg8 ligase activity(GO:0019776) Atg8 activating enzyme activity(GO:0019779) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.3 | ST PAC1 RECEPTOR PATHWAY | PAC1 Receptor Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |