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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G18890

Z-value: 1.12

Transcription factors associated with AT4G18890

Gene Symbol Gene ID Gene Info
AT4G18890 BES1/BZR1 homolog 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
BEH3arTal_v1_Chr4_+_10352386_10352386-0.864.0e-09Click!

Activity profile of AT4G18890 motif

Sorted Z-values of AT4G18890 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_16950705 7.13 AT2G40610.1
expansin A8
Chr5_+_7502427 4.05 AT5G22580.1
Stress responsive A/B Barrel Domain-containing protein
Chr1_-_84864 4.01 AT1G01190.1
AT1G01190.2
cytochrome P450, family 78, subfamily A, polypeptide 8
Chr5_-_2185972 3.75 AT5G07030.1
Eukaryotic aspartyl protease family protein
Chr5_+_5078200 3.49 AT5G15600.1
AT5G15600.2
SPIRAL1-like4
Chr1_-_26468703 3.49 AT1G70280.1
AT1G70280.2
NHL domain-containing protein
Chr1_+_23911024 3.27 AT1G64390.1
glycosyl hydrolase 9C2
Chr3_-_6436046 3.20 AT3G18710.1
plant U-box 29
Chr1_+_28428671 3.14 AT1G75710.1
C2H2-like zinc finger protein
Chr4_-_17181261 3.12 AT4G36360.2
beta-galactosidase 3
Chr4_-_17181466 3.10 AT4G36360.1
beta-galactosidase 3
Chr3_-_22972239 2.99 AT3G62020.2
AT3G62020.1
germin-like protein 10
Chr2_+_6399621 2.98 AT2G14890.2
arabinogalactan protein 9
Chr3_+_20780175 2.98 AT3G55990.1
trichome birefringence-like protein (DUF828)
Chr1_+_23144385 2.92 AT1G62520.1
sulfated surface-like glycoprotein
Chr2_-_9130212 2.80 AT2G21330.3
AT2G21330.2
fructose-bisphosphate aldolase 1
Chr2_+_6399405 2.79 AT2G14890.1
arabinogalactan protein 9
Chr2_-_9130619 2.79 AT2G21330.1
fructose-bisphosphate aldolase 1
Chr3_+_8194606 2.75 AT3G23050.1
AT3G23050.3
AT3G23050.2
indole-3-acetic acid 7
Chr4_+_9780224 2.67 AT4G17560.1
Ribosomal protein L19 family protein
Chr4_-_18165740 2.56 AT4G38970.2
fructose-bisphosphate aldolase 2
Chr4_-_18166008 2.56 AT4G38970.1
fructose-bisphosphate aldolase 2
Chr3_+_11252807 2.52 AT3G29320.1
Glycosyl transferase, family 35
Chr4_+_12376122 2.50 AT4G23750.1
AT4G23750.2
cytokinin response factor 2
Chr1_+_568558 2.33 AT1G02650.2
AT1G02650.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_+_8937358 2.32 AT4G15700.1
Thioredoxin superfamily protein
Chr1_+_26400694 2.30 AT1G70090.1
AT1G70090.2
glucosyl transferase family 8
Chr2_+_539898 2.23 AT2G02130.1
low-molecular-weight cysteine-rich 68
Chr1_-_23137254 2.21 AT1G62510.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_+_11880080 2.19 AT4G22560.1
sulfated surface-like glycoprotein
Chr2_-_12355480 2.19 AT2G28790.1
AT2G28790.2
Pathogenesis-related thaumatin superfamily protein
Chr1_-_21418115 2.16 AT1G57820.1
AT1G57820.3
Zinc finger (C3HC4-type RING finger) family protein
Chr5_+_26281642 2.11 AT5G65700.1
AT5G65700.2
Leucine-rich receptor-like protein kinase family protein
Chr1_-_28159317 2.06 AT1G74970.1
ribosomal protein S9
Chr2_-_15725022 2.06 AT2G37450.2
AT2G37450.3
AT2G37450.1
nodulin MtN21 /EamA-like transporter family protein
Chr1_+_4934120 2.03 AT1G14430.1
glyoxal oxidase-related protein
Chr3_-_4782452 2.01 AT3G14330.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_-_15840678 2.01 AT5G39550.1
Zinc finger (C3HC4-type RING finger) family protein
Chr3_-_5153642 1.96 AT3G15310.1

Chr4_+_13120824 1.94 AT4G25780.1
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr2_+_15860627 1.85 AT2G37880.1
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr1_+_4159227 1.79 AT1G12250.1
AT1G12250.3
AT1G12250.2
Pentapeptide repeat-containing protein
Chr1_-_21417937 1.79 AT1G57820.2
Zinc finger (C3HC4-type RING finger) family protein
Chr4_-_12992585 1.77 AT4G25420.2
AT4G25420.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_23812725 1.76 AT1G64150.1
Uncharacterized protein family (UPF0016)
Chr1_-_10326848 1.73 AT1G29530.1
hypothetical protein
Chr1_+_10846513 1.73 AT1G30610.2
AT1G30610.1
pentatricopeptide (PPR) repeat-containing protein
Chr5_+_7168106 1.72 AT5G21100.1
Plant L-ascorbate oxidase
Chr1_+_18542061 1.71 AT1G50040.1
formin-like protein, putative (DUF1005)
Chr4_-_2118617 1.71 AT4G04330.1
Chaperonin-like RbcX protein
Chr2_+_19476326 1.68 AT2G47460.1
myb domain protein 12
Chr3_-_21805335 1.66 AT3G59010.1
pectin methylesterase 61
Chr3_-_23344801 1.65 AT3G63190.1
ribosome recycling factor, chloroplast precursor
Chr1_+_23481907 1.65 AT1G63300.1
Myosin heavy chain-related protein
Chr5_+_26573964 1.65 AT5G66590.1
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr5_-_10455681 1.62 AT5G28490.1
AT5G28491.1
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
hypothetical protein
Chr5_+_3157980 1.58 AT5G10100.2
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_7332100 1.56 AT1G20990.1
Cysteine/Histidine-rich C1 domain family protein
Chr5_-_1078304 1.56 AT5G03995.1
hypothetical protein
Chr5_-_740319 1.56 AT5G03140.1
Concanavalin A-like lectin protein kinase family protein
Chr5_+_22716917 1.52 AT5G56100.1
glycine-rich protein / oleosin
Chr1_-_23634073 1.52 AT1G63710.1
cytochrome P450, family 86, subfamily A, polypeptide 7
Chr3_-_18666691 1.52 AT3G50340.1
hypothetical protein
Chr3_+_18029659 1.49 AT3G48660.1
transmembrane protein, putative (DUF 3339)
Chr2_+_16273897 1.48 AT2G38970.1
Zinc finger (C3HC4-type RING finger) family protein
Chr4_-_18472048 1.45 AT4G39800.1
myo-inositol-1-phosphate synthase 1
Chr3_+_4403355 1.45 AT3G13510.1
carboxyl-terminal peptidase, putative (DUF239)
Chr1_+_6679281 1.41 AT1G19320.1
Pathogenesis-related thaumatin superfamily protein
Chr1_-_10505166 1.41 AT1G29980.2
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
Chr5_+_20993424 1.40 AT5G51670.1
AT5G51670.2
hypothetical protein (DUF668)
Chr5_+_3047011 1.40 AT5G09805.1
inflorescence deficient in abscission (IDA)-like 3
Chr4_+_1889360 1.39 AT4G03965.1
RING/U-box superfamily protein
Chr1_-_16851224 1.38 AT1G44446.3
AT1G44446.2
AT1G44446.1
Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein
Chr5_-_2874849 1.38 AT5G09240.2
AT5G09240.1
AT5G09240.3
ssDNA-binding transcriptional regulator
Chr1_-_16851010 1.36 AT1G44446.4
Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein
Chr3_+_5547492 1.36 AT3G16350.1
Homeodomain-like superfamily protein
Chr1_+_6331398 1.35 AT1G18400.2
AT1G18400.1
BR enhanced expression 1
Chr3_+_10389482 1.34 AT3G27970.1
Exonuclease family protein
Chr1_-_3440359 1.32 AT1G10460.1
germin-like protein 7
Chr5_-_3740146 1.31 AT5G11620.2
AT5G11620.1
SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-like protein
Chr2_+_13193954 1.31 AT2G31010.2
AT2G31010.1
Protein kinase superfamily protein
Chr1_-_10506189 1.30 AT1G29980.1
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
Chr2_+_18524311 1.29 AT2G44920.2
AT2G44920.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_8165214 1.28 AT4G14150.1
phragmoplast-associated kinesin-related protein 1
Chr1_+_25861094 1.27 AT1G68810.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_20861403 1.26 AT5G51330.2
SWITCH1
Chr3_+_23334574 1.25 AT3G63170.1
Chalcone-flavanone isomerase family protein
Chr4_+_15676240 1.25 AT4G32480.1
sugar phosphate exchanger, putative (DUF506)
Chr4_-_13662672 1.25 AT4G27270.4
Quinone reductase family protein
Chr4_-_13663371 1.24 AT4G27270.2
AT4G27270.1
AT4G27270.3
Quinone reductase family protein
Chr5_-_20861711 1.24 AT5G51330.1
SWITCH1
Chr4_+_17691687 1.24 AT4G37650.1
GRAS family transcription factor
Chr3_-_23195917 1.24 AT3G62700.1
multidrug resistance-associated protein 10
Chr5_-_9005941 1.24 AT5G25830.1
GATA transcription factor 12
Chr2_-_8240018 1.23 AT2G18990.1
thioredoxin-like/ATP-binding protein
Chr2_+_18977344 1.22 AT2G46210.1
Fatty acid/sphingolipid desaturase
Chr1_-_19795544 1.21 AT1G53130.1
Stigma-specific Stig1 family protein
Chr1_-_8763410 1.20 AT1G24764.1
AT1G24764.2
AT1G24764.3
microtubule-associated proteins 70-2
Chr1_-_25949340 1.19 AT1G69030.1
BSD domain-containing protein
Chr5_+_19174589 1.19 AT5G47225.1

Chr1_-_7781179 1.17 AT1G22060.2
sporulation-specific protein
Chr1_-_7781539 1.17 AT1G22060.1
sporulation-specific protein
Chr5_-_1558486 1.17 AT5G05250.1
hypothetical protein
Chr1_+_12472868 1.16 AT1G34245.1
Putative membrane lipoprotein
Chr5_+_14959797 1.16 AT5G37660.2
plasmodesmata-located protein 7
Chr2_+_18582697 1.14 AT2G45050.1
GATA transcription factor 2
Chr1_-_24529313 1.14 AT1G65920.2
AT1G65920.1
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
Chr4_-_18464982 1.13 AT4G39790.1
bZIP transcription factor, putative (DUF630 and DUF632)
Chr1_+_1748259 1.13 AT1G05810.2
Rab GTPase-like A5A protein
Chr2_+_18981911 1.12 AT2G46225.3
AT2G46225.2
AT2G46225.1
ABI-1-like 1
Chr2_-_19353114 1.12 AT2G47150.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_1748443 1.11 AT1G05810.1
Rab GTPase-like A5A protein
Chr1_-_17238185 1.11 AT1G46480.1
AT1G46480.2
WUSCHEL related homeobox 4
Chr1_-_17035105 1.10 AT1G45063.1
AT1G45063.2
copper ion binding / electron carrier protein
Chr1_-_1637914 1.09 AT1G05530.1
UDP-glucosyl transferase 75B2
Chr3_-_18566834 1.09 AT3G50070.1
CYCLIN D3;3
Chr3_+_23444203 1.08 AT3G63490.1
AT3G63490.2
Ribosomal protein L1p/L10e family
Chr3_+_22379740 1.08 AT3G60550.1
cyclin p3;2
Chr5_+_14959614 1.08 AT5G37660.1
plasmodesmata-located protein 7
Chr4_-_17530589 1.08 AT4G37250.1
Leucine-rich repeat protein kinase family protein
Chr3_-_4123582 1.08 AT3G12920.1
SBP (S-ribonuclease binding protein) family protein
Chr5_-_23409452 1.08 AT5G57785.2
hypothetical protein
Chr5_-_26104174 1.06 AT5G65310.2
homeobox protein 5
Chr1_-_28009450 1.06 AT1G74520.2
AT1G74520.1
HVA22 homologue A
Chr3_+_9546259 1.06 AT3G26120.1
terminal EAR1-like 1
Chr2_+_18591628 1.06 AT2G45080.1
cyclin p3;1
Chr5_-_26104614 1.05 AT5G65310.1
homeobox protein 5
Chr3_+_21426285 1.05 AT3G57860.1
UV-B-insensitive 4-like protein
Chr4_+_9157471 1.05 AT4G16160.2
AT4G16160.1
Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
Chr5_+_8148544 1.04 AT5G24100.1
Leucine-rich repeat protein kinase family protein
Chr1_+_5226982 1.04 AT1G15190.1
Fasciclin-like arabinogalactan family protein
Chr5_+_8589457 1.03 AT5G24930.1
zinc finger CONSTANS-like protein
Chr5_-_8494679 1.03 AT5G24750.1
UDP-Glycosyltransferase superfamily protein
Chr3_+_8761419 1.03 AT3G24220.1
nine-cis-epoxycarotenoid dioxygenase 6
Chr1_-_20559103 1.03 AT1G55100.1

Chr1_+_28750872 1.03 AT1G76610.1
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr5_+_25850509 1.02 AT5G64667.1
inflorescence deficient in abscission (IDA)-like 2
Chr1_+_27786864 1.02 AT1G73885.1
AT-rich interactive domain protein
Chr4_-_9555865 1.01 AT4G16970.1
Protein kinase superfamily protein
Chr3_-_3620064 1.01 AT3G11490.1
rac GTPase activating protein
Chr1_-_26723978 1.01 AT1G70880.1
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr2_-_14965438 1.00 AT2G35620.1
AT2G35620.3
AT2G35620.2
Leucine-rich repeat protein kinase family protein
Chr4_+_9128900 1.00 AT4G16140.1
proline-rich family protein
Chr3_-_20167293 1.00 AT3G54460.2
AT3G54460.1
SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
Chr5_-_5271860 1.00 AT5G16140.2
AT5G16140.1
Peptidyl-tRNA hydrolase family protein
Chr1_-_25678468 0.99 AT1G68470.1
Exostosin family protein
Chr1_+_28180057 0.99 AT1G75050.1
Pathogenesis-related thaumatin superfamily protein
Chr1_+_2993381 0.99 AT1G09260.1
Chaperone DnaJ-domain superfamily protein
Chr4_-_5401591 0.98 AT4G08490.1

Chr3_-_12666444 0.98 AT3G31023.1

Chr2_-_9906032 0.98 AT2G23290.1
myb domain protein 70
Chr3_-_19731519 0.97 AT3G53232.1
ROTUNDIFOLIA like 1
Chr3_-_19199498 0.97 AT3G51760.2
AT3G51760.1
AT3G51760.3
AT3G51760.4
hypothetical protein (DUF688)
Chr1_+_9270952 0.96 AT1G26780.2
AT1G26780.1
myb domain protein 117
Chr4_-_9302434 0.96 AT4G16500.1
Cystatin/monellin superfamily protein
Chr2_+_8545634 0.96 AT2G19806.1

Chr1_-_4281131 0.96 AT1G12570.1
Glucose-methanol-choline (GMC) oxidoreductase family protein
Chr4_-_9302022 0.96 AT4G16500.2
Cystatin/monellin superfamily protein
Chr3_+_6678630 0.95 AT3G19274.1
hypothetical protein
Chr5_-_827502 0.95 AT5G03370.1
acylphosphatase family
Chr5_-_23409715 0.95 AT5G57785.1
hypothetical protein
Chr3_-_4240116 0.94 AT3G13180.1
NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein
Chr4_+_14333528 0.94 AT4G29090.1
Ribonuclease H-like superfamily protein
Chr2_-_16797585 0.94 AT2G40220.1
Integrase-type DNA-binding superfamily protein
Chr2_+_15856528 0.93 AT2G37860.3
AT2G37860.4
AT2G37860.1
AT2G37860.2
reticulata-like protein, putative (DUF3411)
Chr1_-_30202349 0.93 AT1G80340.1
gibberellin 3-oxidase 2
Chr1_+_9312936 0.93 AT1G26870.1
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr2_+_13107583 0.93 AT2G30766.1
hypothetical protein
Chr4_-_16211426 0.92 AT4G33800.2
AT4G33800.1
hypothetical protein
Chr3_-_9856212 0.92 AT3G26790.1
AP2/B3-like transcriptional factor family protein
Chr1_+_2888427 0.92 AT1G08990.1
plant glycogenin-like starch initiation protein 5
Chr3_+_23142485 0.92 AT3G62570.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_3157694 0.92 AT5G10100.1
AT5G10100.3
AT5G10100.4
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr4_-_12533924 0.91 AT4G24140.1
alpha/beta-Hydrolases superfamily protein
Chr1_+_11249600 0.91 AT1G31420.2
AT1G31420.1
AT1G31420.3
Leucine-rich repeat protein kinase family protein
Chr2_+_13107909 0.91 AT2G30766.2
hypothetical protein
Chr5_-_18301104 0.90 AT5G45220.2
AT5G45220.1
Disease resistance protein (TIR-NBS-LRR class) family
Chr5_-_2498542 0.90 AT5G07810.1
SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
Chr1_-_21063047 0.90 AT1G56250.1
phloem protein 2-B14
Chr1_+_29220349 0.89 AT1G77740.1
phosphatidylinositol-4-phosphate 5-kinase 2
Chr3_-_23218312 0.89 AT3G62760.1
Glutathione S-transferase family protein
Chr3_+_5006526 0.89 AT3G14880.1
AT3G14880.2
transcription factor-like protein
Chr3_+_22492811 0.89 AT3G60870.1
AT-hook motif nuclear-localized protein 18
Chr5_-_1742161 0.89 AT5G05790.2
AT5G05790.1
Duplicated homeodomain-like superfamily protein
Chr4_+_9128732 0.88 AT4G16140.2
proline-rich family protein
Chr2_-_11095542 0.87 AT2G26040.1
PYR1-like 2
Chr1_-_29993724 0.87 AT1G79700.1
AT1G79700.3
AT1G79700.2
Integrase-type DNA-binding superfamily protein
Chr2_+_17209697 0.87 AT2G41280.1
late embryogenesis abundant protein (M10) / LEA protein M10
Chr2_-_8045008 0.86 AT2G18540.1
AT2G18540.2
RmlC-like cupins superfamily protein
Chr1_-_5082423 0.86 AT1G14750.2
AT1G14750.4
AT1G14750.3
AT1G14750.1
Cyclin family protein
Chr1_+_29220538 0.86 AT1G77740.2
phosphatidylinositol-4-phosphate 5-kinase 2
Chr2_-_14965207 0.85 AT2G35620.4
Leucine-rich repeat protein kinase family protein
Chr4_-_13069762 0.84 AT4G25620.1
hydroxyproline-rich glycoprotein family protein
Chr1_-_23830066 0.84 AT1G64200.2
AT1G64200.3
AT1G64200.1
vacuolar H+-ATPase subunit E isoform 3
Chr5_-_1792634 0.83 AT5G05965.1
cell wall RBR3-like protein
Chr1_-_958383 0.82 AT1G03800.1
ERF domain protein 10
Chr5_+_25836514 0.82 AT5G64640.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_-_371090 0.82 AT1G02070.1
zinc ion-binding protein
Chr1_+_25706882 0.82 AT1G68510.1
LOB domain-containing protein 42
Chr4_-_5466670 0.82 AT4G08590.2
AT4G08590.5
AT4G08590.6
AT4G08590.4
AT4G08590.1
AT4G08590.3
ORTHRUS-like protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G18890

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 6.0 GO:0090309 regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
0.6 10.7 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.6 1.7 GO:0050687 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.6 1.7 GO:1900386 positive regulation of flavonol biosynthetic process(GO:1900386)
0.5 2.1 GO:0010480 microsporocyte differentiation(GO:0010480)
0.5 2.5 GO:0005980 glycogen catabolic process(GO:0005980)
0.5 1.5 GO:0006659 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.4 7.1 GO:0006949 syncytium formation(GO:0006949)
0.3 1.0 GO:0031397 negative regulation of protein ubiquitination(GO:0031397) negative regulation of ligase activity(GO:0051352) negative regulation of ubiquitin-protein transferase activity(GO:0051444) negative regulation of ubiquitin protein ligase activity(GO:1904667)
0.3 2.8 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.3 1.4 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.3 0.9 GO:0009747 hexokinase-dependent signaling(GO:0009747)
0.3 1.2 GO:0009660 amyloplast organization(GO:0009660)
0.3 0.9 GO:0017145 stem cell division(GO:0017145)
0.3 0.9 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.3 1.2 GO:0080141 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.3 1.5 GO:0080065 4-alpha-methyl-delta7-sterol oxidation(GO:0080065)
0.3 0.9 GO:0036292 DNA rewinding(GO:0036292) replication fork protection(GO:0048478)
0.3 1.3 GO:0009647 skotomorphogenesis(GO:0009647)
0.3 0.8 GO:0043953 protein transport by the Tat complex(GO:0043953)
0.3 1.3 GO:0000912 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) phragmoplast assembly(GO:0000914) phragmoplast microtubule organization(GO:0080175) assembly of actomyosin apparatus involved in mitotic cytokinesis(GO:1902407)
0.3 1.3 GO:0010424 DNA methylation on cytosine within a CG sequence(GO:0010424)
0.2 0.5 GO:0048533 sporocyte differentiation(GO:0048533)
0.2 1.5 GO:1904276 regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278)
0.2 2.5 GO:0007143 female meiotic division(GO:0007143)
0.2 2.9 GO:0010274 hydrotropism(GO:0010274)
0.2 3.0 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.2 0.6 GO:0010254 nectary development(GO:0010254)
0.2 0.5 GO:0072526 pyridine-containing compound catabolic process(GO:0072526)
0.2 1.1 GO:0010067 procambium histogenesis(GO:0010067)
0.2 1.8 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.2 1.5 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.1 0.7 GO:1901562 response to paraquat(GO:1901562)
0.1 1.3 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 0.7 GO:0019419 sulfate reduction(GO:0019419)
0.1 0.4 GO:0033506 homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506)
0.1 1.7 GO:0032544 plastid translation(GO:0032544)
0.1 1.8 GO:0048572 short-day photoperiodism(GO:0048572) short-day photoperiodism, flowering(GO:0048575)
0.1 0.6 GO:0071323 cellular response to chitin(GO:0071323)
0.1 3.9 GO:0045492 xylan biosynthetic process(GO:0045492)
0.1 3.5 GO:0043622 cortical microtubule organization(GO:0043622)
0.1 0.6 GO:1904961 quiescent center organization(GO:1904961)
0.1 2.4 GO:0010227 floral organ abscission(GO:0010227)
0.1 1.2 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.1 2.1 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.1 1.0 GO:0000727 double-strand break repair via break-induced replication(GO:0000727)
0.1 0.3 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.1 1.0 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.1 1.0 GO:0001709 cell fate determination(GO:0001709)
0.1 0.6 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 0.5 GO:0045003 double-strand break repair via synthesis-dependent strand annealing(GO:0045003)
0.1 0.3 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.1 2.6 GO:0045489 pectin biosynthetic process(GO:0045489)
0.1 0.9 GO:0051026 chiasma assembly(GO:0051026)
0.1 1.2 GO:1905177 tracheary element differentiation(GO:1905177)
0.1 1.9 GO:0030148 sphingolipid biosynthetic process(GO:0030148)
0.1 0.5 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.1 0.7 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.1 0.7 GO:0048766 root hair initiation(GO:0048766)
0.1 1.4 GO:0045927 positive regulation of growth(GO:0045927)
0.0 3.4 GO:0010114 response to red light(GO:0010114)
0.0 0.2 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.0 0.6 GO:0015914 phospholipid transport(GO:0015914)
0.0 0.8 GO:0031540 regulation of anthocyanin biosynthetic process(GO:0031540)
0.0 0.3 GO:0006542 glutamine biosynthetic process(GO:0006542)
0.0 2.7 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.0 2.5 GO:0048825 cotyledon development(GO:0048825)
0.0 0.3 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655)
0.0 0.9 GO:0010187 negative regulation of seed germination(GO:0010187)
0.0 0.5 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.0 1.0 GO:0019915 lipid storage(GO:0019915)
0.0 0.5 GO:0071484 cellular response to light intensity(GO:0071484)
0.0 1.1 GO:0030838 positive regulation of actin filament polymerization(GO:0030838) actin nucleation(GO:0045010)
0.0 0.5 GO:0006094 gluconeogenesis(GO:0006094)
0.0 1.1 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.0 0.2 GO:0080121 AMP transport(GO:0080121)
0.0 1.1 GO:0000470 maturation of LSU-rRNA(GO:0000470)
0.0 2.5 GO:0009630 gravitropism(GO:0009630)
0.0 0.3 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.0 0.8 GO:0010025 wax biosynthetic process(GO:0010025)
0.0 0.3 GO:0048654 anther morphogenesis(GO:0048654) anther wall tapetum morphogenesis(GO:0048655)
0.0 0.8 GO:0052542 defense response by callose deposition(GO:0052542)
0.0 0.9 GO:0022611 seed dormancy process(GO:0010162) dormancy process(GO:0022611)
0.0 0.7 GO:1900150 regulation of defense response to fungus(GO:1900150)
0.0 0.2 GO:0060260 regulation of transcription initiation from RNA polymerase II promoter(GO:0060260) positive regulation of transcription initiation from RNA polymerase II promoter(GO:0060261) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.0 1.0 GO:0006289 nucleotide-excision repair(GO:0006289)
0.0 0.7 GO:0070417 cellular response to cold(GO:0070417)
0.0 0.3 GO:0006349 regulation of gene expression by genetic imprinting(GO:0006349) genetic imprinting(GO:0071514)
0.0 1.1 GO:0042538 hyperosmotic salinity response(GO:0042538)
0.0 0.4 GO:0071230 cellular response to amino acid stimulus(GO:0071230)
0.0 0.9 GO:0009407 toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487)
0.0 0.6 GO:2000028 regulation of photoperiodism, flowering(GO:2000028)
0.0 0.1 GO:0090342 regulation of cell aging(GO:0090342)
0.0 0.9 GO:0061077 chaperone-mediated protein folding(GO:0061077)
0.0 0.5 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.5 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 0.4 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.0 0.1 GO:0009649 entrainment of circadian clock(GO:0009649)
0.0 0.7 GO:0007267 cell-cell signaling(GO:0007267)
0.0 0.6 GO:0000381 regulation of alternative mRNA splicing, via spliceosome(GO:0000381)
0.0 0.1 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 7.2 GO:0005720 nuclear heterochromatin(GO:0005720)
0.3 0.8 GO:0033281 TAT protein transport complex(GO:0033281)
0.3 2.1 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.2 3.5 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.2 1.1 GO:0031209 SCAR complex(GO:0031209)
0.2 11.3 GO:0010287 plastoglobule(GO:0010287)
0.1 0.3 GO:0009317 acetyl-CoA carboxylase complex(GO:0009317)
0.1 3.7 GO:0009706 chloroplast inner membrane(GO:0009706)
0.1 11.4 GO:0009505 plant-type cell wall(GO:0009505)
0.1 1.3 GO:0005871 kinesin complex(GO:0005871)
0.0 1.0 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.0 0.8 GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain(GO:0033178)
0.0 0.9 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.0 0.5 GO:0045273 respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281)
0.0 0.3 GO:0005677 chromatin silencing complex(GO:0005677)
0.0 0.9 GO:0043596 nuclear replication fork(GO:0043596)
0.0 1.3 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 6.5 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.4 GO:0031355 intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359)
0.0 1.3 GO:0016607 nuclear speck(GO:0016607)
0.0 0.7 GO:0010319 stromule(GO:0010319)
0.0 7.2 GO:0009579 thylakoid(GO:0009579)
0.0 0.2 GO:0019773 proteasome core complex, alpha-subunit complex(GO:0019773)
0.0 6.9 GO:0009570 chloroplast stroma(GO:0009570)
0.0 1.2 GO:0005874 microtubule(GO:0005874)
0.0 2.1 GO:0048046 apoplast(GO:0048046)
0.0 1.6 GO:0000325 plant-type vacuole(GO:0000325)
0.0 27.1 GO:0005576 extracellular region(GO:0005576)
0.0 1.5 GO:0005667 transcription factor complex(GO:0005667)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 7.2 GO:0010429 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.8 10.7 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.6 2.5 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.5 2.7 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.4 3.0 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.4 3.2 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.4 1.5 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.4 1.5 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.4 1.8 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.3 1.5 GO:0003680 AT DNA binding(GO:0003680)
0.3 0.9 GO:0036310 annealing helicase activity(GO:0036310)
0.3 2.5 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.3 1.0 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.2 6.2 GO:0004565 beta-galactosidase activity(GO:0004565)
0.2 2.1 GO:0016161 beta-amylase activity(GO:0016161)
0.2 1.7 GO:0043023 ribosomal large subunit binding(GO:0043023)
0.2 1.3 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.2 0.8 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.1 1.5 GO:0000254 C-4 methylsterol oxidase activity(GO:0000254)
0.1 5.4 GO:0045735 nutrient reservoir activity(GO:0045735)
0.1 1.3 GO:0016872 intramolecular lyase activity(GO:0016872)
0.1 1.8 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.1 1.0 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.1 3.3 GO:0008810 cellulase activity(GO:0008810)
0.1 1.3 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.1 0.4 GO:0047215 indole-3-acetate beta-glucosyltransferase activity(GO:0047215)
0.1 0.4 GO:0080042 ADP-glucose pyrophosphohydrolase activity(GO:0080042)
0.1 2.1 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.1 2.6 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 1.9 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.1 1.3 GO:0016844 strictosidine synthase activity(GO:0016844)
0.1 1.0 GO:2001070 starch binding(GO:2001070)
0.1 0.5 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.1 0.5 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.1 1.0 GO:0070628 proteasome binding(GO:0070628)
0.1 0.5 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.1 0.5 GO:0000210 NAD+ diphosphatase activity(GO:0000210)
0.1 1.9 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.1 2.1 GO:0004707 MAP kinase activity(GO:0004707)
0.1 0.6 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.0 2.5 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.6 GO:0008061 chitin binding(GO:0008061)
0.0 0.8 GO:0046961 proton-transporting ATPase activity, rotational mechanism(GO:0046961)
0.0 0.3 GO:0043015 glutamate-ammonia ligase activity(GO:0004356) gamma-tubulin binding(GO:0043015)
0.0 0.9 GO:0043295 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.0 0.8 GO:0010333 terpene synthase activity(GO:0010333)
0.0 1.1 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.0 0.3 GO:0003989 acetyl-CoA carboxylase activity(GO:0003989)
0.0 0.7 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 2.5 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.4 GO:0008028 monocarboxylic acid transmembrane transporter activity(GO:0008028)
0.0 0.2 GO:0080122 AMP transmembrane transporter activity(GO:0080122)
0.0 0.9 GO:0044183 protein binding involved in protein folding(GO:0044183)
0.0 1.3 GO:0008408 3'-5' exonuclease activity(GO:0008408)
0.0 0.1 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.0 0.8 GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity(GO:0015450)
0.0 0.7 GO:0005179 hormone activity(GO:0005179)
0.0 5.5 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.9 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 0.4 GO:0008066 glutamate receptor activity(GO:0008066)
0.0 1.0 GO:0015171 amino acid transmembrane transporter activity(GO:0015171)
0.0 0.8 GO:0019207 kinase regulator activity(GO:0019207)
0.0 5.6 GO:0020037 heme binding(GO:0020037)
0.0 2.2 GO:0032561 GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561)
0.0 0.2 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.3 GO:0030145 manganese ion binding(GO:0030145)
0.0 1.6 GO:0061630 ubiquitin protein ligase activity(GO:0061630)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.1 PID HDAC CLASSII PATHWAY Signaling events mediated by HDAC Class II
0.1 0.4 PID PI3KCI PATHWAY Class I PI3K signaling events
0.1 0.4 PID REG GR PATHWAY Glucocorticoid receptor regulatory network
0.1 0.1 PID ARF 3PATHWAY Arf1 pathway
0.1 0.2 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.1 2.1 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0 0.7 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.0 0.1 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport