Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT4G18890
Z-value: 1.12
Transcription factors associated with AT4G18890
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G18890
|
AT4G18890 | BES1/BZR1 homolog 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BEH3 | arTal_v1_Chr4_+_10352386_10352386 | -0.86 | 4.0e-09 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 7.13 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr5_+_7502427_7502427 Show fit | 4.05 |
AT5G22580.1
|
Stress responsive A/B Barrel Domain-containing protein |
|
| arTal_v1_Chr1_-_84864_84946 Show fit | 4.01 |
AT1G01190.1
AT1G01190.2 |
cytochrome P450, family 78, subfamily A, polypeptide 8 |
|
| arTal_v1_Chr5_-_2185972_2185972 Show fit | 3.75 |
AT5G07030.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr5_+_5078200_5078293 Show fit | 3.49 |
AT5G15600.1
AT5G15600.2 |
SPIRAL1-like4 |
|
| arTal_v1_Chr1_-_26468703_26468804 Show fit | 3.49 |
AT1G70280.1
AT1G70280.2 |
NHL domain-containing protein |
|
| arTal_v1_Chr1_+_23911024_23911024 Show fit | 3.27 |
AT1G64390.1
|
glycosyl hydrolase 9C2 |
|
| arTal_v1_Chr3_-_6436046_6436046 Show fit | 3.20 |
AT3G18710.1
|
plant U-box 29 |
|
| arTal_v1_Chr1_+_28428671_28428671 Show fit | 3.14 |
AT1G75710.1
|
C2H2-like zinc finger protein |
|
| arTal_v1_Chr4_-_17181261_17181261 Show fit | 3.12 |
AT4G36360.2
|
beta-galactosidase 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G18890
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 10.7 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.4 | 7.1 | GO:0006949 | syncytium formation(GO:0006949) |
| 1.5 | 6.0 | GO:0090309 | regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309) |
| 0.1 | 3.9 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.1 | 3.5 | GO:0043622 | cortical microtubule organization(GO:0043622) |
| 0.0 | 3.4 | GO:0010114 | response to red light(GO:0010114) |
| 0.2 | 3.0 | GO:0010497 | plasmodesmata-mediated intercellular transport(GO:0010497) |
| 0.2 | 2.9 | GO:0010274 | hydrotropism(GO:0010274) |
| 0.3 | 2.8 | GO:0010239 | chloroplast mRNA processing(GO:0010239) |
| 0.0 | 2.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 27.1 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 11.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 11.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.5 | 7.2 | GO:0005720 | nuclear heterochromatin(GO:0005720) |
| 0.0 | 7.2 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 6.9 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 6.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 3.7 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.2 | 3.5 | GO:0010005 | cortical microtubule, transverse to long axis(GO:0010005) |
| 0.3 | 2.1 | GO:0000312 | plastid small ribosomal subunit(GO:0000312) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 10.7 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.8 | 7.2 | GO:0010429 | methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429) |
| 0.2 | 6.2 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.0 | 5.6 | GO:0020037 | heme binding(GO:0020037) |
| 0.0 | 5.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 5.4 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.1 | 3.3 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.4 | 3.2 | GO:0070696 | transmembrane receptor protein serine/threonine kinase binding(GO:0070696) |
| 0.4 | 3.0 | GO:1990538 | xylan O-acetyltransferase activity(GO:1990538) |
| 0.5 | 2.7 | GO:0010277 | chlorophyllide a oxygenase [overall] activity(GO:0010277) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.4 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.1 | 0.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.1 | PID ARF 3PATHWAY | Arf1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.1 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.0 | 0.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.5 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.1 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |