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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G18880
Z-value: 1.46
Transcription factors associated with AT4G18880
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G18880
|
AT4G18880 | heat shock transcription factor A4A |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HSF A4A | arTal_v1_Chr4_-_10349902_10349902 | -0.91 | 2.7e-11 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_176870_176870 Show fit | 8.38 |
AT4G00400.1
|
glycerol-3-phosphate acyltransferase 8 |
|
| arTal_v1_Chr3_+_251868_251868 Show fit | 7.34 |
AT3G01680.1
|
sieve element occlusion amino-terminus protein |
|
| arTal_v1_Chr5_+_152446_152446 Show fit | 6.98 |
AT5G01370.1
|
ALC-interacting protein 1 |
|
| arTal_v1_Chr3_+_18049571_18049571 Show fit | 6.78 |
AT3G48730.1
|
glutamate-1-semialdehyde 2,1-aminomutase 2 |
|
| arTal_v1_Chr3_-_17337733_17337733 Show fit | 6.34 |
AT3G47070.1
|
thylakoid soluble phosphoprotein |
|
| arTal_v1_Chr1_+_310169_310169 Show fit | 6.08 |
AT1G01900.1
|
subtilase family protein |
|
| arTal_v1_Chr1_-_28603932_28603932 Show fit | 5.67 |
AT1G76240.1
|
DUF241 domain protein (DUF241) |
|
| arTal_v1_Chr4_+_9803624_9803624 Show fit | 5.46 |
AT4G17600.1
|
Chlorophyll A-B binding family protein |
|
| arTal_v1_Chr5_+_16768935_16768935 Show fit | 5.43 |
AT5G41900.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr5_+_6457026_6457026 Show fit | 5.33 |
AT5G19190.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G18880
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 12.2 | GO:2000012 | regulation of auxin polar transport(GO:2000012) |
| 0.2 | 9.3 | GO:0042752 | regulation of circadian rhythm(GO:0042752) |
| 0.8 | 9.1 | GO:0010047 | fruit dehiscence(GO:0010047) |
| 0.4 | 8.4 | GO:0016024 | CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341) |
| 2.7 | 8.2 | GO:0006428 | isoleucyl-tRNA aminoacylation(GO:0006428) |
| 0.7 | 7.3 | GO:0010088 | phloem development(GO:0010088) |
| 0.4 | 7.3 | GO:0010052 | guard cell differentiation(GO:0010052) |
| 0.4 | 6.8 | GO:0006782 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
| 1.4 | 5.5 | GO:0033306 | phytol metabolic process(GO:0033306) |
| 0.8 | 5.4 | GO:0016120 | carotene biosynthetic process(GO:0016120) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 26.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 12.0 | GO:0055035 | plastid thylakoid membrane(GO:0055035) |
| 0.2 | 7.7 | GO:0010319 | stromule(GO:0010319) |
| 0.3 | 6.4 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 5.8 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.5 | 5.1 | GO:0031209 | SCAR complex(GO:0031209) |
| 0.0 | 3.9 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 3.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.2 | 3.2 | GO:0019897 | extrinsic component of plasma membrane(GO:0019897) |
| 0.1 | 3.1 | GO:0031307 | intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 13.3 | GO:0003924 | GTPase activity(GO:0003924) |
| 0.1 | 9.2 | GO:0043621 | protein self-association(GO:0043621) |
| 0.2 | 8.6 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 1.0 | 8.4 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 2.7 | 8.2 | GO:0004822 | isoleucine-tRNA ligase activity(GO:0004822) |
| 1.9 | 7.7 | GO:0016656 | monodehydroascorbate reductase (NADH) activity(GO:0016656) |
| 0.1 | 7.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.2 | 6.8 | GO:0009975 | cyclase activity(GO:0009975) |
| 0.1 | 6.8 | GO:0008483 | transaminase activity(GO:0008483) |
| 0.0 | 6.2 | GO:0030234 | enzyme regulator activity(GO:0030234) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.3 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.5 | 2.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 3.0 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.3 | 2.3 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.7 | 2.1 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.6 | 1.7 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |