Project

GSE43616: Time-course of wild-type Arabidopsis leaf

Navigation
Downloads

Results for AT4G18880

Z-value: 1.46

Transcription factors associated with AT4G18880

Gene Symbol Gene ID Gene Info
AT4G18880
AT4G18880 heat shock transcription factor A4A

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
HSF A4AarTal_v1_Chr4_-_10349902_10349902-0.912.7e-11Click!

Activity profile of AT4G18880 motif

Sorted Z-values of AT4G18880 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_176870 8.38 AT4G00400.1
GPAT8
glycerol-3-phosphate acyltransferase 8
Chr3_+_251868 7.34 AT3G01680.1
SEOR1
sieve element occlusion amino-terminus protein
Chr5_+_152446 6.98 AT5G01370.1
ACI1
ALC-interacting protein 1
Chr3_+_18049571 6.78 AT3G48730.1
GSA2
glutamate-1-semialdehyde 2,1-aminomutase 2
Chr3_-_17337733 6.34 AT3G47070.1
AT3G47070
thylakoid soluble phosphoprotein
Chr1_+_310169 6.08 AT1G01900.1
SBTI1.1
subtilase family protein
Chr1_-_28603932 5.67 AT1G76240.1
AT1G76240
DUF241 domain protein (DUF241)
Chr4_+_9803624 5.46 AT4G17600.1
LIL3:1
Chlorophyll A-B binding family protein
Chr5_+_16768935 5.43 AT5G41900.1
AT5G41900
alpha/beta-Hydrolases superfamily protein
Chr5_+_6457026 5.33 AT5G19190.1
AT5G19190
hypothetical protein
Chr1_-_11548016 5.29 AT1G32100.1
PRR1
pinoresinol reductase 1
Chr4_-_7587099 5.08 AT4G12970.1
STOMAGEN
stomagen
Chr5_+_23077120 5.04 AT5G57030.1
LUT2
Lycopene beta/epsilon cyclase protein
Chr3_+_5934033 4.89 AT3G17350.1
AT3G17350.2
AT3G17350
wall-associated receptor kinase carboxy-terminal protein
Chr2_+_18691664 4.81 AT2G45340.1
AT2G45340
Leucine-rich repeat protein kinase family protein
Chr2_+_19469571 4.71 AT2G47440.2
AT2G47440.1
AT2G47440
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_18802552 4.57 AT1G50732.1
AT1G50732
transmembrane protein
Chr1_+_2263037 4.52 AT1G07370.1
PCNA1
proliferating cellular nuclear antigen 1
Chr4_+_8883825 4.31 AT4G15560.1
CLA1
Deoxyxylulose-5-phosphate synthase
Chr5_-_19882462 4.24 AT5G49030.2
AT5G49030.1
OVA2
tRNA synthetase class I (I, L, M and V) family protein
Chr3_-_10129937 4.23 AT3G27360.1
AT3G27360
Histone superfamily protein
Chr3_-_2407634 4.18 AT3G07540.1
AT3G07540
Actin-binding FH2 (formin homology 2) family protein
Chr1_-_3443957 4.13 AT1G10470.3
AT1G10470.2
ARR4
response regulator 4
Chr1_-_3444360 4.09 AT1G10470.1
ARR4
response regulator 4
Chr5_-_19883251 3.97 AT5G49040.1
AT5G49030.3
AT5G49040
OVA2
Disease resistance-responsive (dirigent-like protein) family protein
tRNA synthetase class I (I, L, M and V) family protein
Chr3_+_21680027 3.96 AT3G58620.1
AT3G58620.2
TTL4
tetratricopetide-repeat thioredoxin-like 4
Chr1_+_23730106 3.87 AT1G63940.4
AT1G63940.3
MDAR6
monodehydroascorbate reductase 6
Chr4_-_14627631 3.86 AT4G29905.1
AT4G29905
hypothetical protein
Chr3_-_8533834 3.81 AT3G23700.1
AT3G23700
Nucleic acid-binding proteins superfamily
Chr2_+_10842863 3.80 AT2G25480.2
AT2G25480.1
AT2G25480
TPX2 (targeting protein for Xklp2) protein family
Chr1_+_23729875 3.80 AT1G63940.2
AT1G63940.1
MDAR6
monodehydroascorbate reductase 6
Chr4_+_16394600 3.72 AT4G34250.1
KCS16
3-ketoacyl-CoA synthase 16
Chr4_-_12068538 3.69 AT4G23020.2
AT4G23020.1
TRM11
hypothetical protein
Chr3_-_3393536 3.63 AT3G10840.1
AT3G10840.2
AT3G10840.3
AT3G10840
alpha/beta-Hydrolases superfamily protein
Chr2_+_17446744 3.62 AT2G41820.1
AT2G41820
Leucine-rich repeat protein kinase family protein
Chr3_-_22155641 3.45 AT3G59980.1
AT3G59980
Nucleic acid-binding, OB-fold-like protein
Chr2_-_2272452 3.40 AT2G05920.1
AT2G05920
Subtilase family protein
Chr5_-_20110638 3.38 AT5G49555.1
AT5G49555
FAD/NAD(P)-binding oxidoreductase family protein
Chr2_+_18253610 3.34 AT2G44130.1
AT2G44130
Galactose oxidase/kelch repeat superfamily protein
Chr1_-_22382422 3.33 AT1G60790.1
TBL2
trichome birefringence-like protein (DUF828)
Chr5_+_20303334 3.25 AT5G49910.1
cpHsc70-2
chloroplast heat shock protein 70-2
Chr3_+_6313471 3.22 AT3G18390.1
EMB1865
CRS1 / YhbY (CRM) domain-containing protein
Chr3_-_980562 3.21 AT3G03830.1
SAUR28
SAUR-like auxin-responsive protein family
Chr1_-_2955745 3.21 AT1G09160.1
AT1G09160.2
AT1G09160
Protein phosphatase 2C family protein
Chr1_+_4194420 3.16 AT1G12330.1
AT1G12330
cyclin-dependent kinase-like protein
Chr5_+_1427117 3.16 AT5G04890.1
RTM2
HSP20-like chaperones superfamily protein
Chr2_-_8488269 3.13 AT2G19620.2
NDL3
N-MYC downregulated-like 3
Chr1_-_24062804 3.07 AT1G64780.1
AMT1%3B2
ammonium transporter 1;2
Chr1_+_9996713 3.03 AT1G28440.1
HSL1
HAESA-like 1
Chr2_-_8487996 3.00 AT2G19620.3
NDL3
N-MYC downregulated-like 3
Chr3_-_3392878 2.95 AT3G10840.4
AT3G10840
alpha/beta-Hydrolases superfamily protein
Chr5_+_8151907 2.91 AT5G24105.1
AGP41
arabinogalactan protein 41
Chr2_-_8488963 2.86 AT2G19620.1
NDL3
N-MYC downregulated-like 3
Chr1_-_1611815 2.85 AT1G05470.2
AT1G05470.1
CVP2
DNAse I-like superfamily protein
Chr4_-_12254275 2.85 AT4G23490.1
AT4G23490
fringe-like protein (DUF604)
Chr4_+_17691687 2.77 AT4G37650.1
SHR
GRAS family transcription factor
Chr3_-_4769936 2.73 AT3G14300.1
ATPMEPCRC
pectinesterase family protein
Chr1_-_7781179 2.70 AT1G22060.2
AT1G22060
sporulation-specific protein
Chr5_-_6334642 2.70 AT5G18970.1
AT5G18970
AWPM-19-like family protein
Chr1_-_7781539 2.69 AT1G22060.1
AT1G22060
sporulation-specific protein
Chr2_+_8229116 2.62 AT2G18970.1
AT2G18970
hypothetical protein
Chr4_+_9975365 2.46 AT4G17970.1
ALMT12
aluminum-activated, malate transporter 12
Chr5_+_24758361 2.44 AT5G61570.2
AT5G61570
Protein kinase superfamily protein
Chr3_-_17486347 2.44 AT3G47450.1
AT3G47450.2
NOA1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_18053360 2.40 AT4G38620.1
MYB4
myb domain protein 4
Chr2_-_11792646 2.38 AT2G27630.1
AT2G27630
Ubiquitin carboxyl-terminal hydrolase-related protein
Chr5_+_24758189 2.34 AT5G61570.1
AT5G61570
Protein kinase superfamily protein
Chr3_+_19513937 2.34 AT3G52630.2
AT3G52630.1
AT3G52630
Nucleic acid-binding, OB-fold-like protein
Chr1_-_18626441 2.32 AT1G50280.1
AT1G50280.2
AT1G50280
Phototropic-responsive NPH3 family protein
Chr1_+_1748443 2.32 AT1G05810.1
RABA5E
Rab GTPase-like A5A protein
Chr1_-_24324064 2.31 AT1G65470.2
AT1G65470.1
FAS1
chromatin assembly factor-1 (FASCIATA1) (FAS1)
Chr5_-_7072966 2.29 AT5G20850.1
AT5G20850.2
RAD51
RAS associated with diabetes protein 51
Chr1_-_28011392 2.27 AT1G74530.4
AT1G74530
transmembrane protein
Chr1_+_12977668 2.27 AT1G35340.4
AT1G35340.2
AT1G35340.1
AT1G35340.5
AT1G35340.3
AT1G35340.6
AT1G35340.7
AT1G35340
ATP-dependent protease La (LON) domain protein
Chr2_+_6404131 2.23 AT2G14900.1
AT2G14900
Gibberellin-regulated family protein
Chr5_+_5555057 2.23 AT5G16900.1
AT5G16900
Leucine-rich repeat protein kinase family protein
Chr2_+_959645 2.22 AT2G03160.1
SK19
SKP1-like 19
Chr3_-_8074178 2.22 AT3G22820.1
CLL1
allergen-like protein
Chr1_+_1748259 2.21 AT1G05810.2
RABA5E
Rab GTPase-like A5A protein
Chr5_+_5556103 2.21 AT5G16900.4
AT5G16900
Leucine-rich repeat protein kinase family protein
Chr1_-_28012162 2.20 AT1G74530.1
AT1G74530.3
AT1G74530
transmembrane protein
Chr3_+_519211 2.19 AT3G02500.2
AT3G02500.1
AT3G02500.3
AT3G02500
mental retardation GTPase activating protein
Chr5_+_5555222 2.18 AT5G16900.2
AT5G16900.3
AT5G16900
Leucine-rich repeat protein kinase family protein
Chr1_+_29130375 2.16 AT1G77520.1
AT1G77520
O-methyltransferase family protein
Chr4_-_18451293 2.15 AT4G39770.2
AT4G39770.1
TPPH
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr4_-_9643738 2.13 AT4G17160.1
RABB1a
RAB GTPase homolog B1A
Chr2_-_19222916 2.12 AT2G46770.1
NST1
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr3_-_1975754 2.12 AT3G06440.2
AT3G06440.1
AT3G06440
Galactosyltransferase family protein
Chr4_-_6976014 2.12 AT4G11485.1
LCR11
low-molecular-weight cysteine-rich 11
Chr1_-_28012634 2.11 AT1G74530.2
AT1G74530
transmembrane protein
Chr5_-_19580362 2.11 AT5G48310.1
AT5G48310.2
AT5G48310
portal protein
Chr4_-_15646844 2.09 AT4G32410.1
CESA1
cellulose synthase 1
Chr4_-_16573680 2.09 AT4G34730.3
AT4G34730.2
AT4G34730
ribosome-binding factor A family protein
Chr1_-_21178974 2.06 AT1G56520.2
AT1G56520.5
AT1G56520.1
AT1G56520.3
AT1G56520.4
AT1G56520
Disease resistance protein (TIR-NBS-LRR class) family
Chr3_-_6901334 2.06 AT3G19850.1
AT3G19850
Phototropic-responsive NPH3 family protein
Chr1_-_1022108 2.06 AT1G03980.2
AT1G03980.3
AT1G03980.4
PCS2
phytochelatin synthase 2
Chr3_-_18502725 2.05 AT3G49900.2
AT3G49900.1
AT3G49900
Phototropic-responsive NPH3 family protein
Chr5_+_24844248 2.04 AT5G61850.2
AT5G61850.1
LFY
floral meristem identity control protein LEAFY (LFY)
Chr2_-_12902815 2.03 AT2G30240.1
ATCHX13
Cation/hydrogen exchanger family protein
Chr4_-_16573955 2.01 AT4G34730.1
AT4G34730
ribosome-binding factor A family protein
Chr4_-_18464982 2.01 AT4G39790.1
AT4G39790
bZIP transcription factor, putative (DUF630 and DUF632)
Chr1_-_1021276 2.00 AT1G03980.1
PCS2
phytochelatin synthase 2
Chr4_-_6927678 1.99 AT4G11385.1
AT4G11385
hypothetical protein
Chr2_-_18250779 1.99 AT2G44120.2
AT2G44120
Ribosomal protein L30/L7 family protein
Chr3_+_16968423 1.97 AT3G46200.2
AT3G46200.3
AT3G46200.1
AT3G46200.4
NUDT9
nudix hydrolase homolog 9
Chr2_+_14133810 1.97 AT2G33350.2
AT2G33350.3
AT2G33350.1
AT2G33350
CCT motif family protein
Chr2_+_14135050 1.95 AT2G33350.4
AT2G33350.5
AT2G33350
CCT motif family protein
Chr2_-_18251156 1.95 AT2G44120.1
AT2G44120
Ribosomal protein L30/L7 family protein
Chr2_-_14615733 1.92 AT2G34670.1
AT2G34670.2
AT2G34670
benzoyl-CoA reductase subunit C, putative (DUF630 and DUF632)
Chr1_+_6571184 1.90 AT1G19030.1
AT1G19030

Chr3_+_17592558 1.89 AT3G47720.1
SRO4
similar to RCD one 4
Chr1_+_6343330 1.89 AT1G18420.1
AT1G18420
aluminum activated malate transporter family protein
Chr2_-_13977521 1.88 AT2G32940.1
AGO6
Argonaute family protein
Chr5_+_503408 1.88 AT5G02370.1
AT5G02370
ATP binding microtubule motor family protein
Chr1_-_1331163 1.87 AT1G04730.2
AT1G04730.1
AT1G04730.4
CTF18
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_16969245 1.87 AT3G46200.5
AT3G46200.6
NUDT9
nudix hydrolase homolog 9
Chr1_+_6728747 1.86 AT1G19440.1
KCS4
3-ketoacyl-CoA synthase 4
Chr5_+_533058 1.86 AT5G02450.1
AT5G02450
Ribosomal protein L36e family protein
Chr4_+_2128090 1.85 AT4G04350.1
EMB2369
tRNA synthetase class I (I, L, M and V) family protein
Chr2_-_1934298 1.85 AT2G05310.1
AT2G05310.2
AT2G05310
transmembrane protein
Chr5_-_5662466 1.85 AT5G17230.2
AT5G17230.4
PSY
PHYTOENE SYNTHASE
Chr1_+_5807200 1.85 AT1G16980.2
AT1G16980.1
TPS2
trehalose-6-phosphate synthase
Chr5_-_5662865 1.84 AT5G17230.3
AT5G17230.1
PSY
PHYTOENE SYNTHASE
Chr4_-_17197247 1.84 AT4G36390.1
AT4G36390
Methylthiotransferase
Chr3_-_9148525 1.84 AT3G25110.1
FaTA
fatA acyl-ACP thioesterase
Chr2_+_10258107 1.83 AT2G24130.2
AT2G24130.1
AT2G24130
Leucine-rich receptor-like protein kinase family protein
Chr3_+_13061048 1.82 AT3G32047.1
AT3G32047
Cytochrome P450 superfamily protein
Chr1_-_25271904 1.82 AT1G67460.2
AT1G67460.1
AT1G67460
Minichromosome maintenance (MCM2/3/5) family protein
Chr4_-_7723989 1.81 AT4G13260.3
AT4G13260.2
AT4G13260.1
YUC2
Flavin-binding monooxygenase family protein
Chr4_-_17047315 1.81 AT4G36030.1
ARO3
armadillo repeat only 3
Chr3_+_8048802 1.80 AT3G22780.1
TSO1
Tesmin/TSO1-like CXC domain-containing protein
Chr1_-_12642418 1.79 AT1G34545.1
AT1G34545

Chr5_+_22799507 1.77 AT5G56300.1
GAMT2
gibberellic acid methyltransferase 2
Chr1_+_6343733 1.77 AT1G18420.2
AT1G18420
aluminum activated malate transporter family protein
Chr3_-_5087496 1.77 AT3G15115.1
AT3G15115
serine/arginine repetitive matrix protein
Chr5_+_3761188 1.73 AT5G11690.1
TIM17-3
translocase inner membrane subunit 17-3
Chr3_+_10192294 1.73 AT3G27520.1
AT3G27520
cryptic loci regulator
Chr5_-_3435182 1.72 AT5G10890.1
AT5G10890.2
AT5G10890
myosin heavy chain-like protein
Chr3_-_20400346 1.72 AT3G55040.1
GSTL2
glutathione transferase lambda 2
Chr5_-_18910838 1.71 AT5G46600.1
AT5G46600
aluminum activated malate transporter family protein
Chr4_-_13383641 1.70 AT4G26500.1
CPSUFE
chloroplast sulfur E
Chr5_-_21323780 1.70 AT5G52540.1
AT5G52540
keratin-associated protein, putative (DUF819)
Chr4_-_17666736 1.67 AT4G37590.1
NPY5
Phototropic-responsive NPH3 family protein
Chr5_-_19179849 1.67 AT5G47229.1
AT5G47229
transmembrane protein
Chr2_-_8907282 1.67 AT2G20650.2
AT2G20650.1
AT2G20650
RING/U-box superfamily protein
Chr4_+_18063166 1.67 AT4G38650.1
AT4G38650
Glycosyl hydrolase family 10 protein
Chr5_+_24484498 1.67 AT5G60860.1
RABA1f
RAB GTPase homolog A1F
Chr2_+_1493009 1.66 AT2G04300.2
AT2G04300.1
AT2G04300
Leucine-rich repeat protein kinase family protein
Chr5_+_13881222 1.65 AT5G35715.1
CYP71B8
cytochrome P450, family 71, subfamily B, polypeptide 8
Chr5_+_918689 1.64 AT5G03620.2
AT5G03620.1
AT5G03620
Subtilisin-like serine endopeptidase family protein
Chr3_-_18786686 1.63 AT3G50620.3
AT3G50620.2
AT3G50620
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_8242256 1.62 AT3G23130.1
SUP
C2H2 and C2HC zinc fingers superfamily protein
Chr3_-_15665480 1.61 AT3G43810.4
CAM7
calmodulin 7
Chr4_-_14683484 1.61 AT4G30030.1
AT4G30030
Eukaryotic aspartyl protease family protein
Chr4_+_16368087 1.61 AT4G34170.1
AT4G34170
Galactose oxidase/kelch repeat superfamily protein
Chr1_+_10918267 1.60 AT1G30760.2
AT1G30760.1
AT1G30760
FAD-binding Berberine family protein
Chr5_-_21123133 1.60 AT5G52010.1
AT5G52010
C2H2-like zinc finger protein
Chr3_-_8285081 1.59 AT3G23210.1
AT3G23210.2
bHLH34
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_5502856 1.59 AT5G16740.1
AT5G16740
Transmembrane amino acid transporter family protein
Chr1_+_2137871 1.58 AT1G06970.1
CHX14
cation/hydrogen exchanger 14
Chr1_-_19747287 1.58 AT1G53000.1
CKS
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_+_6577724 1.58 AT3G19050.1
POK2
phragmoplast orienting kinesin 2
Chr2_-_14740146 1.57 AT2G34930.1
AT2G34930
disease resistance family protein / LRR family protein
Chr3_+_17923678 1.57 AT3G48400.1
AT3G48400
Cysteine/Histidine-rich C1 domain family protein
Chr2_+_8587244 1.55 AT2G19890.2
AT2G19890
hypothetical protein
Chr1_+_25018077 1.54 AT1G67035.2
AT1G67035.1
AT1G67035
homeobox Hox-B3-like protein
Chr5_-_22221968 1.54 AT5G54690.1
GAUT12
galacturonosyltransferase 12
Chr1_-_19747804 1.54 AT1G53000.2
CKS
Nucleotide-diphospho-sugar transferases superfamily protein
Chr4_+_15116148 1.53 AT4G31060.1
AT4G31060
Integrase-type DNA-binding superfamily protein
Chr2_+_8586050 1.53 AT2G19890.1
AT2G19890
hypothetical protein
Chr5_-_25071111 1.53 AT5G62430.1
CDF1
cycling DOF factor 1
Chr3_+_18131808 1.53 AT3G48900.2
AT3G48900.1
AT3G48900.3
AT3G48900
single-stranded DNA endonuclease family protein
Chr1_-_9406369 1.51 AT1G27090.1
AT1G27090
glycine-rich protein
Chr3_+_22630331 1.51 AT3G61150.1
HDG1
homeodomain GLABROUS 1
Chr5_+_179822 1.51 AT5G01440.1
AT5G01440
hypothetical protein
Chr5_+_1624563 1.49 AT5G05490.2
SYN1
Rad21/Rec8-like family protein
Chr5_+_1624206 1.48 AT5G05490.1
SYN1
Rad21/Rec8-like family protein
Chr3_-_18786952 1.47 AT3G50620.1
AT3G50620
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_6352325 1.47 AT1G18460.1
AT1G18460
alpha/beta-Hydrolases superfamily protein
Chr2_-_7810811 1.47 AT2G17950.1
WUS
Homeodomain-like superfamily protein
Chr3_-_17959124 1.46 AT3G48480.1
AT3G48480
Cysteine proteinases superfamily protein
Chr3_-_16898013 1.46 AT3G45980.1
HTB9
Histone superfamily protein
Chr4_+_5712328 1.46 AT4G08910.1
AT4G08910
homeobox protein
Chr2_+_12523276 1.44 AT2G29125.1
RTFL2
ROTUNDIFOLIA like 2
Chr1_+_25502864 1.43 AT1G68040.1
AT1G68040
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_-_6097988 1.42 AT4G09647.1
AT4G09647
S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family
Chr2_-_14469876 1.40 AT2G34270.1
AT2G34270
hypothetical protein
Chr3_-_15666468 1.40 AT3G43810.1
AT3G43810.2
AT3G43810.3
CAM7
calmodulin 7
Chr4_+_15842443 1.40 AT4G32830.1
AUR1
ataurora1
Chr2_+_12418017 1.39 AT2G28920.1
AT2G28920
RING/U-box superfamily protein
Chr1_+_3484399 1.39 AT1G10560.1
PUB18
plant U-box 18
Chr2_+_19679730 1.39 AT2G48120.2
AT2G48120.1
PAC
pale cress protein (PAC)
Chr1_+_8417495 1.38 AT1G23810.1
AT1G23810
Paired amphipathic helix (PAH2) superfamily protein
Chr1_+_3957284 1.38 AT1G11730.1
AT1G11730
Galactosyltransferase family protein
Chr5_+_6249727 1.37 AT5G18740.1
AT5G18740
hypothetical protein (DUF3444)
Chr3_-_19199498 1.36 AT3G51760.2
AT3G51760.1
AT3G51760.3
AT3G51760.4
AT3G51760
hypothetical protein (DUF688)
Chr5_-_21391561 1.35 AT5G52780.1
AT5G52780
transmembrane protein, putative (DUF3464)
Chr1_+_2426705 1.35 AT1G07850.1
AT1G07850
transferring glycosyl group transferase (DUF604)
Chr1_-_11239363 1.32 AT1G31370.1
AT1G31370
Ubiquitin-specific protease family C19-related protein
Chr5_-_10578143 1.32 AT5G28580.2
AT5G28580

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G18880

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
2.7 8.2 GO:0006428 isoleucyl-tRNA aminoacylation(GO:0006428)
1.4 5.5 GO:0033306 phytol metabolic process(GO:0033306)
1.3 3.8 GO:0071242 cellular response to ammonium ion(GO:0071242)
1.1 5.3 GO:0009807 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.9 1.8 GO:0010235 guard mother cell cytokinesis(GO:0010235)
0.8 9.1 GO:0010047 fruit dehiscence(GO:0010047)
0.8 2.4 GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0010322)
0.8 4.1 GO:0071276 phytochelatin metabolic process(GO:0046937) phytochelatin biosynthetic process(GO:0046938) cellular response to cadmium ion(GO:0071276) cellular detoxification of cadmium ion(GO:0098849)
0.8 3.2 GO:0046741 transport of virus in host, tissue to tissue(GO:0046741)
0.8 5.4 GO:0016120 carotene biosynthetic process(GO:0016120)
0.8 2.3 GO:0000730 DNA recombinase assembly(GO:0000730) strand invasion(GO:0042148)
0.7 3.0 GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation(GO:0051316) attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation(GO:0051455) microtubule cytoskeleton organization involved in homologous chromosome segregation(GO:0090172)
0.7 4.4 GO:0006272 leading strand elongation(GO:0006272)
0.7 7.3 GO:0010088 phloem development(GO:0010088)
0.7 5.1 GO:2000601 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.5 4.3 GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0019288)
0.5 1.5 GO:1904215 regulation of protein import into chloroplast stroma(GO:1904215)
0.5 2.3 GO:0031507 heterochromatin assembly(GO:0031507)
0.5 12.2 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.4 8.4 GO:0016024 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.4 7.3 GO:0010052 guard cell differentiation(GO:0010052)
0.4 2.9 GO:0010067 procambium histogenesis(GO:0010067) inositol trisphosphate metabolic process(GO:0032957)
0.4 6.8 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.4 2.2 GO:0016572 histone phosphorylation(GO:0016572)
0.4 1.1 GO:0031114 regulation of microtubule depolymerization(GO:0031114)
0.3 3.0 GO:0005513 detection of calcium ion(GO:0005513)
0.3 3.9 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.3 1.3 GO:0001113 DNA-templated transcriptional open complex formation(GO:0001112) transcriptional open complex formation at RNA polymerase II promoter(GO:0001113) protein-DNA complex remodeling(GO:0001120) macromolecular complex remodeling(GO:0034367)
0.3 1.6 GO:0080175 phragmoplast microtubule organization(GO:0080175)
0.3 1.7 GO:0010731 protein glutathionylation(GO:0010731)
0.3 1.1 GO:0048657 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.3 0.5 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.3 1.9 GO:0000244 spliceosomal tri-snRNP complex assembly(GO:0000244)
0.2 1.0 GO:0046949 fatty-acyl-CoA biosynthetic process(GO:0046949)
0.2 3.7 GO:0030497 fatty acid elongation(GO:0030497)
0.2 0.7 GO:0019184 glutathione biosynthetic process(GO:0006750) nonribosomal peptide biosynthetic process(GO:0019184)
0.2 5.0 GO:0010030 positive regulation of seed germination(GO:0010030)
0.2 4.2 GO:0015743 malate transport(GO:0015743)
0.2 1.5 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.2 5.1 GO:0016117 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.2 1.8 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.2 4.5 GO:0008356 asymmetric cell division(GO:0008356)
0.2 2.0 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.2 1.0 GO:0010623 programmed cell death involved in cell development(GO:0010623)
0.2 9.3 GO:0042752 regulation of circadian rhythm(GO:0042752)
0.1 0.7 GO:0071490 far-red light signaling pathway(GO:0010018) cellular response to far red light(GO:0071490)
0.1 3.8 GO:1901068 guanosine-containing compound metabolic process(GO:1901068)
0.1 0.4 GO:0031848 protection from non-homologous end joining at telomere(GO:0031848)
0.1 4.0 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.1 2.4 GO:2000762 regulation of phenylpropanoid metabolic process(GO:2000762)
0.1 0.8 GO:0007188 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger(GO:0007187) adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188)
0.1 1.5 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1 1.1 GO:0006880 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.1 1.0 GO:0030308 negative regulation of cell growth(GO:0030308)
0.1 1.3 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.1 1.5 GO:0048496 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.1 1.6 GO:0010093 specification of floral organ identity(GO:0010093)
0.1 0.7 GO:0042138 meiotic DNA double-strand break formation(GO:0042138)
0.1 0.3 GO:0080168 abscisic acid transport(GO:0080168)
0.1 0.4 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 1.3 GO:0097031 mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031)
0.1 4.7 GO:0006885 regulation of pH(GO:0006885)
0.1 3.2 GO:0045036 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.1 1.7 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.1 2.2 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.1 0.4 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.1 0.4 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.1 0.7 GO:0010098 suspensor development(GO:0010098)
0.1 0.2 GO:0070898 RNA polymerase III transcriptional preinitiation complex assembly(GO:0070898)
0.1 0.8 GO:0070475 rRNA base methylation(GO:0070475)
0.1 3.1 GO:0009226 nucleotide-sugar biosynthetic process(GO:0009226)
0.1 0.4 GO:0010380 regulation of chlorophyll biosynthetic process(GO:0010380)
0.0 1.1 GO:0009612 response to mechanical stimulus(GO:0009612)
0.0 1.7 GO:0009958 positive gravitropism(GO:0009958)
0.0 0.8 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.0 3.2 GO:0007018 microtubule-based movement(GO:0007018)
0.0 0.3 GO:0051418 interphase microtubule nucleation by interphase microtubule organizing center(GO:0051415) microtubule nucleation by microtubule organizing center(GO:0051418)
0.0 1.2 GO:0010143 cutin biosynthetic process(GO:0010143)
0.0 1.5 GO:0006334 nucleosome assembly(GO:0006334)
0.0 1.1 GO:0031163 iron-sulfur cluster assembly(GO:0016226) metallo-sulfur cluster assembly(GO:0031163)
0.0 0.7 GO:0019432 triglyceride biosynthetic process(GO:0019432)
0.0 1.6 GO:0009851 auxin biosynthetic process(GO:0009851)
0.0 0.7 GO:0046219 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.0 0.4 GO:0051026 chiasma assembly(GO:0051026)
0.0 0.2 GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA(GO:0000290)
0.0 3.7 GO:0006633 fatty acid biosynthetic process(GO:0006633)
0.0 1.9 GO:0002181 cytoplasmic translation(GO:0002181)
0.0 0.6 GO:2000008 regulation of protein localization to cell surface(GO:2000008)
0.0 0.3 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 2.3 GO:0045490 pectin catabolic process(GO:0045490)
0.0 0.8 GO:0006505 GPI anchor metabolic process(GO:0006505) GPI anchor biosynthetic process(GO:0006506)
0.0 0.4 GO:0042026 protein refolding(GO:0042026)
0.0 0.1 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.0 0.4 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.0 0.7 GO:0010582 floral meristem determinacy(GO:0010582)
0.0 0.5 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.0 0.5 GO:0045492 xylan biosynthetic process(GO:0045492)
0.0 0.6 GO:0009686 gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686)
0.0 0.4 GO:0000470 maturation of LSU-rRNA(GO:0000470)
0.0 3.1 GO:0009738 abscisic acid-activated signaling pathway(GO:0009738)
0.0 5.0 GO:0046686 response to cadmium ion(GO:0046686)
0.0 0.6 GO:0007062 sister chromatid cohesion(GO:0007062)
0.0 0.2 GO:0051123 RNA polymerase II transcriptional preinitiation complex assembly(GO:0051123)
0.0 0.3 GO:0016575 histone deacetylation(GO:0016575)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.2 GO:0009501 amyloplast(GO:0009501)
0.5 5.1 GO:0031209 SCAR complex(GO:0031209)
0.4 3.0 GO:0030893 nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.3 1.4 GO:0032133 chromosome passenger complex(GO:0032133)
0.3 6.4 GO:0031012 extracellular matrix(GO:0031012)
0.2 1.9 GO:0032153 cell division site(GO:0032153)
0.2 3.2 GO:0019897 extrinsic component of plasma membrane(GO:0019897)
0.2 1.3 GO:0005673 transcription factor TFIIE complex(GO:0005673)
0.2 7.7 GO:0010319 stromule(GO:0010319)
0.1 3.1 GO:0031307 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.1 1.7 GO:0031305 integral component of mitochondrial inner membrane(GO:0031305)
0.1 2.7 GO:0000794 condensed nuclear chromosome(GO:0000794)
0.1 1.1 GO:0005876 spindle microtubule(GO:0005876)
0.1 1.9 GO:0005871 kinesin complex(GO:0005871)
0.1 0.2 GO:0000126 transcription factor TFIIIB complex(GO:0000126)
0.1 3.0 GO:0005657 replication fork(GO:0005657)
0.1 3.3 GO:0010287 plastoglobule(GO:0010287)
0.0 26.5 GO:0009570 chloroplast stroma(GO:0009570)
0.0 5.8 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 0.7 GO:0031965 nuclear membrane(GO:0031965)
0.0 12.0 GO:0055035 plastid thylakoid membrane(GO:0055035)
0.0 0.4 GO:0000784 nuclear chromosome, telomeric region(GO:0000784)
0.0 0.2 GO:1990726 Lsm1-7-Pat1 complex(GO:1990726)
0.0 0.4 GO:0030686 90S preribosome(GO:0030686)
0.0 1.5 GO:0009705 plant-type vacuole membrane(GO:0009705)
0.0 0.3 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 0.2 GO:0005669 transcription factor TFIID complex(GO:0005669)
0.0 3.9 GO:0005730 nucleolus(GO:0005730)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.7 8.2 GO:0004822 isoleucine-tRNA ligase activity(GO:0004822)
1.9 7.7 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
1.8 5.3 GO:0010283 pinoresinol reductase activity(GO:0010283)
1.4 4.3 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
1.2 3.7 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
1.0 8.4 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.7 5.1 GO:0051018 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.6 5.5 GO:0043495 protein anchor(GO:0043495)
0.5 2.3 GO:0000150 recombinase activity(GO:0000150)
0.4 2.2 GO:0035173 histone kinase activity(GO:0035173)
0.4 3.8 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.4 2.9 GO:0046030 inositol trisphosphate phosphatase activity(GO:0046030)
0.4 4.1 GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity(GO:0016756)
0.4 1.5 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.4 1.1 GO:0051010 microtubule plus-end binding(GO:0051010)
0.3 0.8 GO:0000009 alpha-1,6-mannosyltransferase activity(GO:0000009)
0.2 5.6 GO:0102338 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.2 1.7 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.2 3.1 GO:0070567 cytidylyltransferase activity(GO:0070567)
0.2 1.1 GO:0016724 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.2 6.8 GO:0009975 cyclase activity(GO:0009975)
0.2 8.6 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.2 1.0 GO:0031956 medium-chain fatty acid-CoA ligase activity(GO:0031956)
0.2 1.9 GO:0002161 aminoacyl-tRNA editing activity(GO:0002161)
0.2 1.8 GO:0004312 fatty acid synthase activity(GO:0004312)
0.2 0.7 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.2 1.8 GO:0010340 carboxyl-O-methyltransferase activity(GO:0010340)
0.2 1.9 GO:0003950 NAD+ ADP-ribosyltransferase activity(GO:0003950)
0.2 3.1 GO:0008146 sulfotransferase activity(GO:0008146)
0.2 1.8 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 2.1 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.1 9.2 GO:0043621 protein self-association(GO:0043621)
0.1 1.1 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 0.8 GO:0008169 C-methyltransferase activity(GO:0008169)
0.1 0.5 GO:0052740 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.1 0.6 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.1 1.8 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.1 1.8 GO:0016782 transferase activity, transferring sulfur-containing groups(GO:0016782)
0.1 6.8 GO:0008483 transaminase activity(GO:0008483)
0.1 2.2 GO:0097602 cullin family protein binding(GO:0097602)
0.1 1.1 GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485)
0.1 3.6 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.1 3.1 GO:0008171 O-methyltransferase activity(GO:0008171)
0.1 4.9 GO:0030247 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.1 1.3 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.1 0.2 GO:0000992 polymerase III regulatory region sequence-specific DNA binding(GO:0000992) RNA polymerase III type 3 promoter sequence-specific DNA binding(GO:0001006) RNA polymerase III regulatory region DNA binding(GO:0001016) RNA polymerase III type 3 promoter DNA binding(GO:0001032)
0.1 0.6 GO:0010333 terpene synthase activity(GO:0010333)
0.1 0.8 GO:0004930 G-protein coupled receptor activity(GO:0004930)
0.1 7.7 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.1 13.3 GO:0003924 GTPase activity(GO:0003924)
0.1 2.2 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.1 4.7 GO:0003777 microtubule motor activity(GO:0003777)
0.1 0.4 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.1 3.8 GO:0019901 protein kinase binding(GO:0019901)
0.1 1.5 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 0.7 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.1 0.3 GO:0043015 gamma-tubulin binding(GO:0043015)
0.0 4.8 GO:0051082 unfolded protein binding(GO:0051082)
0.0 0.4 GO:0035312 5'-3' exodeoxyribonuclease activity(GO:0035312)
0.0 0.1 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.0 5.0 GO:0030246 carbohydrate binding(GO:0030246)
0.0 1.5 GO:0004407 histone deacetylase activity(GO:0004407) protein deacetylase activity(GO:0033558)
0.0 1.7 GO:0004364 glutathione transferase activity(GO:0004364)
0.0 0.5 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.0 0.7 GO:0043295 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.0 1.7 GO:0022884 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)
0.0 2.3 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 1.1 GO:0019199 transmembrane receptor protein kinase activity(GO:0019199)
0.0 1.1 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.0 0.3 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.0 0.2 GO:0000339 RNA cap binding(GO:0000339)
0.0 0.2 GO:0033613 activating transcription factor binding(GO:0033613)
0.0 3.8 GO:0005507 copper ion binding(GO:0005507)
0.0 6.2 GO:0030234 enzyme regulator activity(GO:0030234)
0.0 2.1 GO:0004722 protein serine/threonine phosphatase activity(GO:0004722)
0.0 1.1 GO:0042393 histone binding(GO:0042393)
0.0 0.2 GO:0016251 obsolete general RNA polymerase II transcription factor activity(GO:0016251)
0.0 1.2 GO:0004601 peroxidase activity(GO:0004601)
0.0 0.3 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 0.3 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)
0.0 0.4 GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.1 PID HIF1A PATHWAY Hypoxic and oxygen homeostasis regulation of HIF-1-alpha
0.4 2.3 PID BARD1 PATHWAY BARD1 signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.1 REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha
0.6 3.0 REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Dopamine Neurotransmitter Release Cycle
0.6 1.7 REACTOME GLYCOSPHINGOLIPID METABOLISM Genes involved in Glycosphingolipid metabolism
0.3 2.3 REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS Genes involved in Homologous recombination repair of replication-independent double-strand breaks