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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G18450
Z-value: 0.53
Transcription factors associated with AT4G18450
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G18450
|
AT4G18450 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT4G18450 | arTal_v1_Chr4_-_10191252_10191252 | 0.40 | 3.4e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28177670_28177670 Show fit | 2.12 |
AT1G75040.1
|
pathogenesis-related protein 5 |
|
| arTal_v1_Chr1_-_5645443_5645443 Show fit | 1.98 |
AT1G16510.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr4_+_17440177_17440177 Show fit | 1.83 |
AT4G36990.1
|
heat shock factor 4 |
|
| arTal_v1_Chr1_-_5338326_5338326 Show fit | 1.79 |
AT1G15520.1
AT1G15520.2 |
pleiotropic drug resistance 12 |
|
| arTal_v1_Chr3_-_1776840_1776840 Show fit | 1.78 |
AT3G05937.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_20876440_20876440 Show fit | 1.74 |
AT1G55850.1
|
cellulose synthase like E1 |
|
| arTal_v1_Chr4_+_7239200_7239200 Show fit | 1.52 |
AT4G12080.1
|
AT-hook motif nuclear-localized protein 1 |
|
| arTal_v1_Chr4_-_12890261_12890262 Show fit | 1.51 |
AT4G25110.2
AT4G25110.1 |
metacaspase 2 |
|
| arTal_v1_Chr1_-_19690589_19690589 Show fit | 1.47 |
AT1G52880.1
|
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
|
| arTal_v1_Chr5_-_25764420_25764420 Show fit | 1.39 |
AT5G64430.1
|
Octicosapeptide/Phox/Bem1p family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G18450
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 2.3 | GO:0031540 | regulation of anthocyanin biosynthetic process(GO:0031540) |
| 0.0 | 2.2 | GO:0050832 | defense response to fungus(GO:0050832) |
| 0.4 | 1.8 | GO:0015692 | lead ion transport(GO:0015692) abscisic acid transport(GO:0080168) |
| 0.0 | 1.8 | GO:0009408 | response to heat(GO:0009408) |
| 0.1 | 1.7 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.1 | 1.5 | GO:0048317 | seed morphogenesis(GO:0048317) |
| 0.1 | 1.5 | GO:0043069 | negative regulation of programmed cell death(GO:0043069) |
| 0.1 | 1.4 | GO:0015914 | phospholipid transport(GO:0015914) |
| 0.1 | 1.4 | GO:0015996 | chlorophyll catabolic process(GO:0015996) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.1 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 1.5 | GO:0098687 | chromosomal region(GO:0098687) |
| 0.0 | 1.4 | GO:0042025 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 1.3 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.1 | 1.2 | GO:0045281 | respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281) |
| 0.4 | 1.1 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.2 | 0.9 | GO:0038201 | TORC1 complex(GO:0031931) TOR complex(GO:0038201) |
| 0.1 | 0.9 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.0 | 0.9 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 0.9 | GO:0035097 | histone methyltransferase complex(GO:0035097) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.7 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.0 | 1.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 1.6 | GO:0019901 | protein kinase binding(GO:0019901) |
| 0.0 | 1.6 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.3 | 1.5 | GO:0003680 | AT DNA binding(GO:0003680) |
| 0.0 | 1.5 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.3 | 1.3 | GO:0010277 | chlorophyllide a oxygenase [overall] activity(GO:0010277) |
| 0.1 | 1.3 | GO:0047617 | acyl-CoA hydrolase activity(GO:0047617) |
| 0.2 | 1.2 | GO:0008177 | succinate dehydrogenase (ubiquinone) activity(GO:0008177) |
| 0.1 | 1.2 | GO:0102391 | decanoate--CoA ligase activity(GO:0102391) |